Experiment set5IT003 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Isoleucine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_25680 -4.3 -4.1 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data) compare
AO353_10670 -4.3 -5.1 shikimate dehydrogenase compare
AO353_26650 -4.2 -4.9 dihydrolipoamide dehydrogenase compare
AO353_02075 -4.1 -5.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_15410 -4.0 -2.8 hypothetical protein compare
AO353_20625 -4.0 -2.8 3-isopropylmalate dehydratase compare
AO353_08885 -4.0 -13.2 polyphosphate kinase compare
AO353_26640 -3.9 -4.6 2-oxoisovalerate dehydrogenase compare
AO353_14505 -3.9 -7.5 ketol-acid reductoisomerase compare
AO353_20665 -3.9 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_00890 -3.7 -3.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_07515 -3.7 -2.6 transporter compare
AO353_12070 -3.7 -6.7 imidazoleglycerol-phosphate dehydratase compare
AO353_12085 -3.7 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_25685 -3.7 -6.6 acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) conserved
AO353_20635 -3.7 -9.5 3-isopropylmalate dehydrogenase compare
AO353_10025 -3.7 -9.8 pyruvate carboxylase subunit B compare
AO353_10030 -3.7 -6.6 pyruvate carboxylase subunit A compare
AO353_07215 -3.7 -4.4 anthranilate phosphoribosyltransferase compare
AO353_05115 -3.7 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_08185 -3.7 -6.6 methionine biosynthesis protein MetW compare
AO353_09720 -3.7 -2.5 hypothetical protein compare
AO353_20695 -3.6 -5.5 O-succinylhomoserine sulfhydrylase compare
AO353_07525 -3.6 -10.7 biotin synthase compare
AO353_10035 -3.6 -7.7 LysR family transcriptional regulator compare
AO353_15925 -3.6 -10.7 2-isopropylmalate synthase compare
AO353_07230 -3.5 -12.8 anthranilate synthase compare
AO353_13070 -3.5 -7.1 phosphoserine phosphatase compare
AO353_07560 -3.5 -11.3 malate synthase G compare
AO353_13165 -3.4 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
AO353_05110 -3.4 -8.6 histidinol dehydrogenase compare
AO353_00430 -3.4 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_00895 -3.4 -5.7 2-methylcitrate synthase conserved
AO353_08345 -3.4 -6.8 dihydroxy-acid dehydratase compare
AO353_02710 -3.4 -7.5 (p)ppGpp synthetase compare
AO353_20620 -3.4 -6.8 isopropylmalate isomerase compare
AO353_12365 -3.3 -3.9 phosphoribosyl-AMP cyclohydrolase compare
AO353_07520 -3.3 -10.0 8-amino-7-oxononanoate synthase compare
AO353_03100 -3.3 -3.2 XRE family transcriptional regulator compare
AO353_14220 -3.2 -2.2 ribosomal large subunit pseudouridine synthase D compare
AO353_20660 -3.2 -4.4 pseudouridine synthase compare
AO353_00900 -3.2 -6.5 2-methylisocitrate lyase compare
AO353_17105 -3.2 -7.2 ABC transporter ATP-binding protein conserved
AO353_02070 -3.2 -5.7 prephenate dehydratase compare
AO353_17110 -3.2 -4.3 ABC transporter ATP-binding protein compare
AO353_00885 -3.2 -3.7 3-methylitaconate isomerase compare
AO353_12360 -3.1 -7.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08180 -3.1 -10.0 homoserine O-acetyltransferase compare
AO353_08045 -3.1 -12.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_12090 -3.1 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07510 -3.1 -9.1 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_11850 -3.1 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_08685 -3.1 -5.2 N-acetylglutamate synthase compare
AO353_26655 -3.1 -4.7 branched-chain amino acid aminotransferase compare
AO353_26645 -3.1 -3.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_26635 -3.1 -6.5 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) conserved
AO353_26630 -3.1 -5.1 ArsR family transcriptional regulator conserved
AO353_12075 -3.0 -7.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07505 -3.0 -7.8 dethiobiotin synthetase compare
AO353_06320 -3.0 -3.5 AsnC family transcriptional regulator compare
AO353_07210 -3.0 -4.5 indole-3-glycerol-phosphate synthase compare
AO353_08165 -3.0 -2.0 pyrroline-5-carboxylate reductase compare
AO353_14495 -3.0 -8.1 acetolactate synthase 3 catalytic subunit compare
AO353_06495 -2.9 -4.9 gamma-glutamyl phosphate reductase compare
AO353_08475 -2.9 -7.8 phosphoserine phosphatase compare
AO353_04155 -2.9 -9.6 ornithine carbamoyltransferase compare
AO353_12500 -2.9 -2.0 shikimate kinase compare
AO353_07645 -2.9 -2.0 sarcosine oxidase subunit gamma compare
AO353_10710 -2.8 -3.9 tryptophan synthase subunit beta compare
AO353_09040 -2.8 -2.4 diaminopimelate epimerase compare
AO353_03580 -2.8 -2.7 ATP-dependent DNA helicase RuvB compare
AO353_14500 -2.8 -5.7 acetolactate synthase 3 regulatory subunit compare
AO353_14400 -2.8 -3.8 Fis family transcriptional regulator compare
AO353_02685 -2.8 -3.3 phosphoribosylglycinamide formyltransferase compare
AO353_25705 -2.8 -9.2 AraC family transcriptional regulator conserved
AO353_09000 -2.8 -4.2 argininosuccinate lyase compare
AO353_08510 -2.7 -4.9 3-phosphoglycerate dehydrogenase compare
AO353_14115 -2.7 -5.8 gamma-glutamyl kinase compare
AO353_14370 -2.7 -6.0 glucose-6-phosphate isomerase compare
AO353_04105 -2.7 -6.2 argininosuccinate synthase compare
AO353_14595 -2.7 -8.1 carbonate dehydratase compare
AO353_25695 -2.6 -9.1 AMP-binding protein conserved
AO353_23405 -2.6 -3.0 hypothetical protein compare
AO353_00905 -2.5 -4.2 GntR family transcriptional regulator compare
AO353_07220 -2.5 -6.7 anthranilate synthase compare
AO353_00310 -2.5 -7.7 transaldolase compare
AO353_20540 -2.5 -6.5 aromatic amino acid aminotransferase compare
AO353_07155 -2.5 -5.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_22800 -2.5 -3.4 sulfite reductase compare
AO353_26045 -2.5 -2.4 hypothetical protein compare
AO353_12460 -2.5 -7.1 malate dehydrogenase compare
AO353_16940 -2.5 -4.4 deoxycytidine triphosphate deaminase compare
AO353_02720 -2.5 -5.7 cysteine synthase compare
AO353_00865 -2.4 -8.4 phosphoenolpyruvate synthase compare
AO353_08015 -2.4 -5.5 5,10-methylenetetrahydrofolate reductase compare
AO353_19060 -2.3 -4.4 CysB family transcriptional regulator compare
AO353_17085 -2.3 -2.7 hypothetical protein compare
AO353_19310 -2.3 -2.1 enoyl-CoA hydratase compare
AO353_20175 -2.3 -3.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_24130 -2.3 -2.3 hypothetical protein compare
AO353_06045 -2.3 -5.7 exodeoxyribonuclease V subunit beta compare
AO353_09265 -2.2 -2.6 hypothetical protein compare
AO353_08470 -2.2 -4.0 RNA pyrophosphohydrolase compare
AO353_12240 -2.2 -5.0 histidine utilization repressor compare
AO353_12105 -2.1 -5.3 peptidase S41 compare
AO353_26090 -2.1 -2.5 hypothetical protein compare
AO353_14420 -2.1 -3.8 molecular chaperone DnaK compare
AO353_05420 -2.1 -2.0 peptide chain release factor 3 compare
AO353_12115 -2.1 -2.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13640 -2.1 -3.7 histidine kinase compare
AO353_07315 -2.1 -2.0 rRNA methyltransferase compare
AO353_10510 -2.1 -2.0 benzoate transporter compare
AO353_27735 -2.1 -6.0 isocitrate lyase compare
AO353_15250 -2.0 -3.4 cytochrome B compare
AO353_03830 -2.0 -1.8 antibiotic biosynthesis monooxygenase compare
AO353_27675 -2.0 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_00495 -2.0 -2.3 DNA topoisomerase I compare
AO353_11775 -2.0 -6.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_03820 -2.0 -3.2 Asp/Glu/hydantoin racemase compare
AO353_03590 -2.0 -3.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_06040 -1.9 -3.2 exodeoxyribonuclease V subunit alpha compare
AO353_21640 -1.9 -1.6 cobalt transporter compare
AO353_05690 -1.9 -3.2 SsrA-binding protein compare
AO353_00825 -1.9 -3.3 porin compare
AO353_00750 -1.9 -3.8 GntR family transcriptional regulator compare
AO353_17640 -1.9 -2.5 serine peptidase compare
AO353_10430 -1.8 -3.5 chromosome partitioning protein ParB compare
AO353_04565 -1.8 -4.5 nucleoid-associated protein compare
AO353_14775 -1.8 -5.0 hypothetical protein compare
AO353_06050 -1.8 -5.3 exodeoxyribonuclease V subunit gamma compare
AO353_14405 -1.8 -9.6 ATPase compare
AO353_11125 -1.8 -3.9 5S ribosomal RNA compare
AO353_16495 -1.8 -4.9 zinc metallopeptidase RseP compare
AO353_00650 -1.8 -2.6 cytochrome biogenesis protein compare
AO353_09240 -1.7 -2.4 acetylglutamate kinase compare
AO353_18540 -1.7 -2.3 pseudouridine synthase compare
AO353_15385 -1.7 -2.5 hypothetical protein compare
AO353_02250 -1.7 -3.2 chorismate synthase compare
AO353_01375 -1.7 -4.6 phosphate acyltransferase compare
AO353_12080 -1.7 -3.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_19505 -1.7 -2.1 FAD-dependent oxidoreductase compare
AO353_09260 -1.6 -5.2 ribonuclease PH compare
AO353_17125 -1.6 -7.0 leucine ABC transporter substrate-binding protein conserved
AO353_08130 -1.6 -2.5 uracil phosphoribosyltransferase compare
AO353_19090 -1.6 -2.0 MarR family transcriptional regulator compare
AO353_13245 -1.6 -6.3 hypothetical protein compare
AO353_03715 -1.6 -2.0 H-NS histone compare
AO353_15170 -1.6 -2.2 cytochrome D ubiquinol oxidase subunit III compare
AO353_13350 -1.6 -9.0 branched-chain amino acid ABC transporter permease conserved
AO353_03605 -1.6 -1.4 FmdB family transcriptional regulator compare
AO353_29340 -1.6 -2.3 transporter compare
AO353_10705 -1.5 -3.4 tryptophan synthase subunit alpha compare
AO353_20510 -1.5 -2.2 amidase compare
AO353_07290 -1.5 -5.6 mannose-1-phosphate guanylyltransferase compare
AO353_06100 -1.5 -1.6 thymidylate synthase compare
AO353_04355 -1.5 -1.8 homoserine dehydrogenase compare
AO353_21290 -1.5 -2.1 hypothetical protein compare
AO353_13355 -1.5 -5.2 ABC transporter ATP-binding protein conserved
AO353_04220 -1.5 -4.1 chemotaxis protein CheY compare
AO353_17115 -1.5 -8.2 leucine/isoleucine/valine transporter permease subunit conserved
AO353_13140 -1.5 -4.1 tRNA dimethylallyltransferase compare
AO353_17120 -1.5 -7.8 branched-chain amino acid transporter permease subunit LivH conserved
AO353_26520 -1.5 -2.8 TetR family transcriptional regulator compare
AO353_08620 -1.5 -2.0 hypothetical protein compare
AO353_18705 -1.5 -3.5 anti-anti-sigma factor compare
AO353_21330 -1.5 -5.8 RpiR family transcriptional regulator compare
AO353_09400 -1.5 -3.3 hypothetical protein compare
AO353_10435 -1.5 -6.6 chromosome partitioning protein compare
AO353_03615 -1.5 -2.7 cold-shock protein compare
AO353_13340 -1.4 -8.8 amino acid ABC transporter substrate-binding protein conserved
AO353_13345 -1.4 -8.3 branched-chain amino acid transporter permease subunit LivH conserved
AO353_05985 -1.4 -5.4 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) conserved
AO353_23785 -1.4 -1.9 hypothetical protein compare
AO353_27950 -1.4 -1.9 hypothetical protein compare
AO353_09050 -1.4 -2.7 recombinase XerC compare
AO353_09915 -1.4 -4.3 long-chain acyl-CoA thioester hydrolase compare
AO353_14150 -1.4 -1.6 peptidylprolyl isomerase compare
AO353_02640 -1.4 -0.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_11750 -1.4 -2.0 ATPase compare
AO353_17130 -1.4 -4.4 hypothetical protein compare
AO353_25050 -1.3 -3.5 AraC family transcriptional regulator compare
AO353_25165 -1.3 -3.2 ATP-NAD kinase compare
AO353_23410 -1.3 -1.8 hypothetical protein compare
AO353_17785 -1.3 -1.5 hypothetical protein compare
AO353_19750 -1.3 -1.7 diaminopimelate epimerase compare
AO353_22345 -1.3 -5.5 ATPase compare
AO353_24745 -1.3 -1.9 hypothetical protein compare
AO353_04410 -1.3 -2.0 phosphoribosylglycinamide formyltransferase compare
AO353_08245 -1.3 -2.3 cell division ATP-binding protein FtsE compare
AO353_07325 -1.3 -1.5 diadenosine tetraphosphatase compare
AO353_02975 -1.3 -2.3 aspartate kinase compare
AO353_08265 -1.3 -3.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_15185 -1.3 -3.4 ATPase compare
AO353_06455 -1.3 -1.9 D-alanyl-D-alanine carboxypeptidase compare
AO353_12015 -1.3 -1.8 antitoxin compare
AO353_02630 -1.3 -2.2 5,6-dimethylbenzimidazole synthase compare
AO353_12535 -1.3 -2.5 hypothetical protein compare
AO353_27550 -1.3 -1.2 hypothetical protein compare
AO353_18505 -1.3 -0.9 translation initiation factor 2 compare
AO353_08505 -1.2 -6.4 FAD-linked oxidase compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source L-Isoleucine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Isoleucine across organisms