Experiment set5IT001 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -4.0 -4.7 O-succinylhomoserine sulfhydrylase compare
AO353_08475 -3.9 -2.7 phosphoserine phosphatase compare
AO353_08185 -3.8 -3.7 methionine biosynthesis protein MetW compare
AO353_05115 -3.8 -5.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20625 -3.7 -2.6 3-isopropylmalate dehydratase compare
AO353_07525 -3.7 -6.7 biotin synthase compare
AO353_20665 -3.7 -7.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07220 -3.7 -4.4 anthranilate synthase compare
AO353_20635 -3.7 -7.8 3-isopropylmalate dehydrogenase compare
AO353_08885 -3.6 -11.2 polyphosphate kinase compare
AO353_14590 -3.6 -2.5 serine kinase/phosphatase compare
AO353_14505 -3.6 -6.0 ketol-acid reductoisomerase compare
AO353_12085 -3.6 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12070 -3.6 -4.2 imidazoleglycerol-phosphate dehydratase compare
AO353_12520 -3.5 -6.3 glutamate synthase compare
AO353_20540 -3.5 -5.4 aromatic amino acid aminotransferase compare
AO353_22800 -3.5 -2.4 sulfite reductase compare
AO353_05110 -3.4 -6.2 histidinol dehydrogenase compare
AO353_07510 -3.4 -6.2 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_07230 -3.4 -10.1 anthranilate synthase compare
AO353_11775 -3.4 -4.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_02070 -3.4 -4.0 prephenate dehydratase compare
AO353_12515 -3.4 -13.0 glutamate synthase compare
AO353_10025 -3.4 -6.9 pyruvate carboxylase subunit B compare
AO353_10670 -3.4 -5.1 shikimate dehydrogenase compare
AO353_09160 -3.4 -7.8 AsnC family transcriptional regulator conserved
AO353_06495 -3.4 -2.3 gamma-glutamyl phosphate reductase compare
AO353_20620 -3.4 -6.0 isopropylmalate isomerase compare
AO353_02075 -3.3 -7.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_00430 -3.3 -3.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07520 -3.3 -8.0 8-amino-7-oxononanoate synthase compare
AO353_08345 -3.3 -5.0 dihydroxy-acid dehydratase compare
AO353_09155 -3.2 -5.4 amino acid dehydrogenase compare
AO353_08510 -3.2 -2.2 3-phosphoglycerate dehydrogenase compare
AO353_07505 -3.2 -5.8 dethiobiotin synthetase compare
AO353_13165 -3.2 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_21935 -3.2 -2.2 nitrite reductase compare
AO353_07215 -3.2 -4.3 anthranilate phosphoribosyltransferase compare
AO353_08180 -3.1 -7.6 homoserine O-acetyltransferase compare
AO353_13070 -3.1 -5.6 phosphoserine phosphatase compare
AO353_14115 -3.1 -3.0 gamma-glutamyl kinase compare
AO353_02710 -3.1 -5.6 (p)ppGpp synthetase compare
AO353_12365 -3.1 -3.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_08045 -3.0 -10.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_15925 -3.0 -9.3 2-isopropylmalate synthase compare
AO353_20810 -2.9 -2.3 hypothetical protein compare
AO353_09150 -2.9 -2.9 cytochrome C2 compare
AO353_12075 -2.9 -4.9 imidazole glycerol phosphate synthase subunit HisH compare
AO353_10030 -2.9 -6.6 pyruvate carboxylase subunit A compare
AO353_08465 -2.9 -13.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_19360 -2.9 -2.8 peroxiredoxin compare
AO353_04155 -2.9 -7.6 ornithine carbamoyltransferase compare
AO353_14495 -2.8 -6.6 acetolactate synthase 3 catalytic subunit compare
AO353_06320 -2.8 -2.7 AsnC family transcriptional regulator compare
AO353_14220 -2.8 -1.9 ribosomal large subunit pseudouridine synthase D compare
AO353_05105 -2.8 -7.8 histidinol-phosphate aminotransferase compare
AO353_16195 -2.8 -2.1 DNA mismatch repair protein MutT compare
AO353_00490 -2.8 -3.3 PasA protein compare
AO353_02975 -2.8 -2.7 aspartate kinase compare
AO353_10710 -2.7 -1.9 tryptophan synthase subunit beta compare
AO353_10035 -2.7 -7.0 LysR family transcriptional regulator compare
AO353_12360 -2.7 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_14595 -2.7 -7.0 carbonate dehydratase compare
AO353_00865 -2.7 -7.9 phosphoenolpyruvate synthase compare
AO353_03015 -2.7 -3.7 arginine N-succinyltransferase compare
AO353_18560 -2.7 -2.4 class I peptide chain release factor compare
AO353_07210 -2.7 -3.7 indole-3-glycerol-phosphate synthase compare
AO353_07155 -2.7 -3.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_03590 -2.7 -2.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_08470 -2.6 -3.6 RNA pyrophosphohydrolase compare
AO353_14500 -2.6 -4.4 acetolactate synthase 3 regulatory subunit compare
AO353_14400 -2.6 -2.5 Fis family transcriptional regulator compare
AO353_11920 -2.6 -2.5 hypothetical protein compare
AO353_12090 -2.6 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_04105 -2.6 -5.2 argininosuccinate synthase compare
AO353_02005 -2.6 -1.7 hypothetical protein compare
AO353_05130 -2.6 -2.2 anti-anti-sigma factor compare
AO353_14370 -2.5 -4.8 glucose-6-phosphate isomerase compare
AO353_12115 -2.5 -1.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08015 -2.5 -3.8 5,10-methylenetetrahydrofolate reductase compare
AO353_22520 -2.5 -2.4 hypothetical protein compare
AO353_09885 -2.4 -2.4 transcriptional regulator PhoU compare
AO353_12500 -2.4 -1.7 shikimate kinase compare
AO353_09000 -2.4 -2.9 argininosuccinate lyase compare
AO353_00495 -2.4 -2.3 DNA topoisomerase I compare
AO353_20510 -2.4 -2.8 amidase compare
AO353_13610 -2.4 -3.7 precorrin isomerase compare
AO353_02250 -2.4 -2.8 chorismate synthase compare
AO353_21455 -2.4 -2.2 cation:proton antiporter compare
AO353_08685 -2.4 -5.0 N-acetylglutamate synthase compare
AO353_22475 -2.4 -3.0 alkaline phosphatase compare
AO353_13100 -2.3 -1.6 GTPase RsgA compare
AO353_19060 -2.3 -3.8 CysB family transcriptional regulator compare
AO353_06540 -2.3 -2.2 hypothetical protein compare
AO353_09045 -2.3 -2.1 hypothetical protein compare
AO353_10320 -2.3 -1.6 hypothetical protein compare
AO353_01375 -2.2 -5.9 phosphate acyltransferase compare
AO353_21630 -2.2 -2.8 precorrin-4 C11-methyltransferase compare
AO353_03020 -2.2 -6.3 arginine N-succinyltransferase compare
AO353_01780 -2.2 -7.9 heat-shock protein Hsp90 compare
AO353_20660 -2.2 -4.0 pseudouridine synthase compare
AO353_02720 -2.2 -4.9 cysteine synthase compare
AO353_00825 -2.2 -2.6 porin compare
AO353_16940 -2.2 -3.9 deoxycytidine triphosphate deaminase compare
AO353_17855 -2.1 -2.6 ribonuclease D compare
AO353_04365 -2.1 -4.7 recombinase XerD compare
AO353_14420 -2.1 -2.9 molecular chaperone DnaK compare
AO353_23785 -2.1 -2.3 hypothetical protein compare
AO353_21625 -2.1 -2.5 Fe/S biogenesis protein NfuA compare
AO353_09240 -2.1 -1.4 acetylglutamate kinase compare
AO353_09285 -2.0 -7.5 reactive intermediate/imine deaminase compare
AO353_24260 -2.0 -1.9 hypothetical protein compare
AO353_03580 -2.0 -2.7 ATP-dependent DNA helicase RuvB compare
AO353_00870 -1.9 -3.7 hypothetical protein compare
AO353_16845 -1.9 -7.0 LysR family transcriptional regulator compare
AO353_12145 -1.9 -3.4 nitrogen regulation protein NR(I) compare
AO353_07900 -1.9 -2.4 hypothetical protein compare
AO353_27650 -1.8 -3.7 cell division protein FtsK compare
AO353_02885 -1.8 -2.2 flagellar biosynthesis protein FlgN compare
AO353_23910 -1.8 -2.7 response regulator compare
AO353_06040 -1.8 -2.7 exodeoxyribonuclease V subunit alpha compare
AO353_19515 -1.8 -3.0 haloacid dehalogenase compare
AO353_13095 -1.8 -2.9 flagellar motor protein MotB compare
AO353_08265 -1.8 -3.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_25640 -1.7 -2.3 AsnC family transcriptional regulator compare
AO353_27710 -1.7 -1.6 DNA repair protein compare
AO353_22305 -1.7 -1.7 LysR family transcriptional regulator compare
AO353_29280 -1.7 -2.5 hypothetical protein compare
AO353_28495 -1.7 -2.3 hypothetical protein compare
AO353_09040 -1.7 -1.7 diaminopimelate epimerase compare
AO353_04355 -1.7 -1.6 homoserine dehydrogenase compare
AO353_14775 -1.7 -4.2 hypothetical protein compare
AO353_13140 -1.7 -3.4 tRNA dimethylallyltransferase compare
AO353_04565 -1.7 -3.8 nucleoid-associated protein compare
AO353_03525 -1.6 -6.3 quinolinate synthase A compare
AO353_00750 -1.6 -3.1 GntR family transcriptional regulator compare
AO353_24120 -1.6 -2.1 hypothetical protein compare
AO353_10430 -1.6 -2.7 chromosome partitioning protein ParB compare
AO353_14945 -1.6 -2.2 hypothetical protein compare
AO353_28425 -1.6 -3.0 TetR family transcriptional regulator compare
AO353_08165 -1.6 -2.1 pyrroline-5-carboxylate reductase compare
AO353_19290 -1.6 -2.6 molybdenum cofactor sulfurase compare
AO353_20340 -1.6 -3.1 gamma-carboxygeranoyl-CoA hydratase compare
AO353_11165 -1.6 -5.7 hypothetical protein compare
AO353_26115 -1.6 -1.8 hypothetical protein compare
AO353_23570 -1.6 -2.5 LysR family transcriptional regulator compare
AO353_21400 -1.6 -2.1 conjugal transfer protein TraR compare
AO353_17750 -1.6 -2.1 transcriptional regulator compare
AO353_03130 -1.5 -2.5 hypothetical protein compare
AO353_06045 -1.5 -4.5 exodeoxyribonuclease V subunit beta compare
AO353_10505 -1.5 -2.6 hypothetical protein compare
AO353_11850 -1.5 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_13245 -1.5 -5.5 hypothetical protein compare
AO353_11340 -1.5 -1.3 MarR family transcriptional regulator compare
AO353_06050 -1.5 -4.1 exodeoxyribonuclease V subunit gamma compare
AO353_25925 -1.5 -1.5 hypothetical protein compare
AO353_24440 -1.5 -1.7 reactive intermediate/imine deaminase compare
AO353_13080 -1.5 -4.8 thiosulfate sulfurtransferase compare
AO353_15250 -1.5 -2.5 cytochrome B compare
AO353_13590 -1.5 -4.0 cobalt-precorrin-6X reductase compare
AO353_05080 -1.5 -6.4 sulfate adenylyltransferase compare
AO353_07355 -1.5 -3.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_09320 -1.5 -5.5 ATP-dependent DNA helicase RecG compare
AO353_16120 -1.5 -8.4 D-alanine and L-alanine transporter (from data) conserved
AO353_02940 -1.5 -2.2 DNA-binding protein compare
AO353_20370 -1.5 -2.2 MerR family transcriptional regulator compare
AO353_17820 -1.5 -2.9 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO353_14935 -1.5 -2.6 aminopeptidase compare
AO353_13640 -1.4 -3.0 histidine kinase compare
AO353_14865 -1.4 -3.7 cupin compare
AO353_02465 -1.4 -1.3 hypothetical protein compare
AO353_07515 -1.4 -1.4 transporter compare
AO353_03005 -1.4 -3.5 succinylarginine dihydrolase compare
AO353_12105 -1.4 -3.7 peptidase S41 compare
AO353_03275 -1.4 -1.3 LysR family transcriptional regulator compare
AO353_04500 -1.4 -1.9 DNA repair protein RecO compare
AO353_29215 -1.4 -1.2 alpha/beta hydrolase compare
AO353_10440 -1.4 -3.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_08910 -1.4 -1.9 hypothetical protein compare
AO353_09050 -1.4 -2.5 recombinase XerC compare
AO353_04230 -1.4 -2.4 chemotaxis protein CheW compare
AO353_17680 -1.4 -3.6 MBL fold metallo-hydrolase compare
AO353_23845 -1.4 -4.5 LysR family transcriptional regulator compare
AO353_02685 -1.4 -2.3 phosphoribosylglycinamide formyltransferase compare
AO353_09275 -1.4 -2.3 DNA-directed RNA polymerase subunit omega compare
AO353_05690 -1.3 -2.4 SsrA-binding protein compare
AO353_22685 -1.3 -2.5 peroxidase compare
AO353_02040 -1.3 -1.9 integration host factor subunit beta compare
AO353_13685 -1.3 -3.2 3-dehydroquinate dehydratase compare
AO353_16805 -1.3 -3.7 recombinase RecA compare
AO353_20170 -1.3 -3.4 trigger factor compare
AO353_19280 -1.3 -1.3 hypothetical protein compare
AO353_02060 -1.3 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_13575 -1.3 -2.1 hypothetical protein compare
AO353_20185 -1.3 -3.8 DNA-binding protein compare
AO353_05520 -1.3 -3.4 nicotinate-nucleotide pyrophosphorylase compare
AO353_08115 -1.3 -3.8 energy transducer TonB compare
AO353_15185 -1.3 -2.8 ATPase compare
AO353_20245 -1.3 -3.0 LysR family transcriptional regulator compare
AO353_22150 -1.3 -1.8 iron transporter compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Alanine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Alanine across organisms