Experiment set5H7 for Shewanella oneidensis MR-1

Compare to:

LB with 5-Hydroxymethylfurfural 15 mM

200 most detrimental genes:

  gene name fitness t score description  
SO0624 crp +1.3 10.4 catabolite gene activator (NCBI ptt file) compare
SO0879 +1.1 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO3847 +1.1 4.2 conserved hypothetical protein (NCBI ptt file) compare
SO2232.1 +1.0 3.1 hypothetical ABC transporter (NCBI ptt file) compare
SO3819.1 +1.0 3.1 hypothetical ammonia permease (NCBI ptt file) compare
SO2668 +1.0 5.1 prophage MuSo2, positive regulator of late transcription, putative (NCBI ptt file) compare
SO2838 +1.0 2.3 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) compare
SO2639 +1.0 2.1 hypothetical protein (NCBI ptt file) compare
SO2753.2 +0.9 3.9 hypothetical sodium-type flagellar protein MotY (NCBI ptt file) compare
SO1476 smpA +0.9 1.1 small protein A (NCBI ptt file) compare
SO3988 arcA +0.9 2.0 aerobic respiration control protein ArcA (NCBI ptt file) compare
SO_A0111 +0.9 1.2 no description compare
SO1587 +0.8 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO3271 +0.8 2.7 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO1329 +0.8 4.7 adenylate cyclase-related protein (NCBI ptt file) compare
SO2914 +0.8 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO2672 +0.8 3.5 conserved hypothetical protein (NCBI ptt file) compare
SO1889 +0.7 2.4 hypothetical protein (NCBI ptt file) compare
SO3203 +0.7 2.1 CheW domain protein (NCBI ptt file) compare
SO4452 moaA +0.7 4.3 molybdenum cofactor biosynthesis protein A (NCBI ptt file) compare
SO4510 fdhB-1 +0.7 4.9 formate dehydrogenase, iron-sulfur subunit (NCBI ptt file) compare
SO2851 +0.7 2.6 histidinol phosphatase domain protein (NCBI ptt file) compare
SO3470 +0.7 1.5 conserved hypothetical protein TIGR00244 (NCBI ptt file) compare
SO1247 +0.7 2.7 hypothetical protein (NCBI ptt file) compare
SO0637 +0.7 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO1182 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
SO3699 +0.7 1.5 hypothetical protein (NCBI ptt file) compare
SO4504 +0.7 5.2 conserved hypothetical protein (NCBI ptt file) compare
SO0752 +0.7 2.2 hypothetical protein (NCBI ptt file) compare
SO2125 cheD-1 +0.7 1.9 chemotaxis protein CheD (NCBI ptt file) compare
SO3704 +0.7 2.3 hypothetical protein (NCBI ptt file) compare
SO2661 +0.7 1.9 hypothetical protein (NCBI ptt file) compare
SO3831 +0.7 1.3 acetyltransferase, GNAT family (NCBI ptt file) compare
SO1533 +0.7 3.3 glycine cleavage system transcriptional activator, putative (NCBI ptt file) compare
SO2203 dgkA +0.7 2.2 diacylglycerol kinase (NCBI ptt file) compare
SO3656 +0.7 1.7 hypothetical protein (NCBI ptt file) compare
SO1256 +0.6 1.7 hypothetical 4-hydroxybenzoyl-CoA thioesterase (NCBI ptt file) compare
SO2858 +0.6 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO3147 +0.6 2.3 hypothetical protein (NCBI ptt file) compare
SO2793 +0.6 2.2 glyoxalase family protein (NCBI ptt file) compare
SO1617 +0.6 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO_A0021 +0.6 1.4 no description compare
SO3517 ndh +0.6 4.7 NADH dehydrogenase (NCBI ptt file) compare
SO2841 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
SO1664 galE +0.6 3.8 UDP-glucose 4-epimerase (NCBI ptt file) compare
SO3677 +0.6 2.3 hypothetical protein (NCBI ptt file) compare
SO4679 +0.6 3.8 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO0567 plsC +0.6 2.4 1-acyl-sn-glycerol-3-phosphate acyltransferase (NCBI ptt file) compare
SO3380 +0.6 2.8 conserved hypothetical protein (NCBI ptt file) compare
SO0849 napD +0.6 2.6 napD protein (NCBI ptt file) compare
SO3066 +0.6 3.5 conserved hypothetical protein (NCBI ptt file) compare
SO2181 +0.6 0.9 hypothetical protein (NCBI ptt file) compare
SO1683 +0.6 1.8 3-hydroxy-2-methylbutyryl-CoA dehydrogenase IvdG (EC:1.1.1.178) (from data) compare
SO2591 +0.6 3.5 conserved hypothetical protein (NCBI ptt file) compare
SO3220 fliN +0.6 2.2 flagellar motor switch protein FliN (NCBI ptt file) compare
SO1703 +0.6 1.1 transcriptional regulator, TetR family (NCBI ptt file) compare
SO2441 thiG +0.6 2.3 thiG protein (NCBI ptt file) compare
SO4509 +0.6 5.1 formate dehydrogenase, alpha subunit (NCBI ptt file) compare
SO0466 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
SO2407 +0.6 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO_t037 tRNA-Pro-4 +0.6 1.9 tRNA-Pro (RefSeq) compare
SO4490 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
SO3256 +0.6 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO2239 +0.6 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO1858 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
SO1532 +0.6 1.7 hypothetical protein (NCBI ptt file) compare
SO1590 +0.6 2.5 hypothetical protein (NCBI ptt file) compare
SO4492 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO2617 udk +0.6 1.3 uridine kinase (NCBI ptt file) compare
SO0334 +0.5 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO4507 +0.5 3.2 TorA specific chaperone, putative (NCBI ptt file) compare
SO1723 +0.5 2.7 phosphate ABC transporter, permease protein, putative (NCBI ptt file) compare
SO3705 +0.5 2.8 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase, putative (NCBI ptt file) compare
SO4506 +0.5 3.7 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO2473 +0.5 2.3 hydrolase, alpha/beta fold family (NCBI ptt file) compare
SO1805 sapA +0.5 1.2 peptide ABC transporter, periplasmic peptide-binding protein (NCBI ptt file) compare
SO0359 spoT +0.5 1.7 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (NCBI ptt file) compare
SO1860 +0.5 3.2 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SO1152 +0.5 0.6 hypothetical protein (NCBI ptt file) compare
SO3557 +0.5 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO4505 +0.5 2.9 conserved hypothetical protein (NCBI ptt file) compare
SO0600 amiB +0.5 2.4 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
SO4681 +0.5 4.4 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO4720 +0.5 3.7 ABC transporter, permease protein (NCBI ptt file) compare
SO2983 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
SO3288 +0.5 3.0 transglycosylase, Slt family (NCBI ptt file) compare
SO2671 +0.5 3.0 conserved hypothetical protein (NCBI ptt file) compare
SO4584 ftsX +0.5 3.7 cell division ABC transporter, permease protein FtsX (NCBI ptt file) compare
SO3826 +0.5 1.6 conserved domain protein (NCBI ptt file) compare
SO4508 +0.5 2.4 hypothetical protein (NCBI ptt file) compare
SO3112 yajC +0.5 1.2 preprotein translocase, YajC subunit (NCBI ptt file) compare
SO3025 +0.5 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO2396 +0.5 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO3787 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
SO3708 +0.5 0.9 membrane protein, putative (NCBI ptt file) compare
SO4410 glnA +0.5 2.4 glutamine synthetase, type I (NCBI ptt file) compare
SO0462 +0.5 2.1 hypothetical protein (NCBI ptt file) compare
SO4566 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
SO3085 +0.5 1.7 conserved domain protein (NCBI ptt file) compare
SO1941 corA +0.5 2.6 magnesium and cobalt transport protein CorA (NCBI ptt file) compare
SO0048 +0.5 3.4 peptidase, M23/M37 family (NCBI ptt file) compare
SO2915 ackA +0.5 2.3 acetate kinase (NCBI ptt file) compare
SO4089 +0.5 2.7 HlyD family secretion protein (NCBI ptt file) compare
SO0137 moeB +0.5 3.3 molybdopterin biosynthesis MoeB protein (NCBI ptt file) compare
SO_3457 +0.5 4.0 hybrid sensory histidine kinase BarA (RefSeq) compare
SO3961 rpoN +0.5 2.4 RNA polymerase sigma-54 factor (NCBI ptt file) compare
SO3830 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO1998 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3888 +0.5 2.9 conserved hypothetical protein (NCBI ptt file) compare
SO_2812 +0.5 0.9 no description compare
SO3550 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
SO4090 +0.4 2.9 outer membrane efflux protein (NCBI ptt file) compare
SO1320 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
SO2020 gsk +0.4 2.6 inosine-guanosine kinase (NCBI ptt file) compare
SO1675 +0.4 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO4212 +0.4 2.0 peptidase, M23/M37 family (NCBI ptt file) compare
SO1671 +0.4 2.2 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
SO2387 +0.4 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO3117 +0.4 1.5 thioredoxin, putative (NCBI ptt file) compare
SO4717 +0.4 3.7 sensor histidine kinase (NCBI ptt file) compare
SO3016 +0.4 2.2 Sua5/YciO/YrdC/YwlC family protein (NCBI ptt file) compare
SO1953 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO4330 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO4228 +0.4 0.8 conserved hypothetical protein TIGR00242 (NCBI ptt file) compare
SO_3450 +0.4 1.5 no description compare
SO2540 +0.4 1.8 response regulator (NCBI ptt file) compare
SO3209 cheY-3 +0.4 1.0 chemotaxis protein CheY (NCBI ptt file) compare
SO1947 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO1922 +0.4 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO2435 +0.4 1.4 methyltransferase, putative (NCBI ptt file) compare
SO2634 +0.4 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO1908 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
SO2237 ptsI +0.4 1.2 phosphoenolpyruvate-protein phosphotransferase (NCBI ptt file) compare
SO0566 +0.4 1.8 ABC 3 transport family protein (NCBI ptt file) compare
SO1537 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
SO3010 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
SO0480 +0.4 1.7 conserved domain protein (NCBI ptt file) compare
SO4682 +0.4 2.7 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO2788 rrmA +0.4 1.3 ribosomal RNA large subunit methyltransferase A (NCBI ptt file) compare
SO3057 +0.4 2.6 Pal/histidase family protein (NCBI ptt file) compare
SO0513 +0.4 1.3 prokaryotic and mitochondrial release factors family protein (NCBI ptt file) compare
SO1087 +0.4 3.0 Na+/H+ antiporter family protein (NCBI ptt file) compare
SO2008 +0.4 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO0208.1 +0.4 0.9 putative transposase (NCBI ptt file) compare
SO4727 +0.4 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO1059 +0.4 3.1 aminopeptidase N (NCBI ptt file) compare
SOA0110 +0.4 1.5 lipoprotein, putative (NCBI ptt file) compare
SO2585 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
SO1298.3 +0.4 0.9 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO0065 mog +0.4 2.7 molybdenum cofactor biosynthesis protein Mog (NCBI ptt file) compare
SO2190 creA +0.4 0.8 creA protein (NCBI ptt file) compare
SO4723 +0.4 3.3 molybdopterin biosynthesis MoeA protein, putative (NCBI ptt file) compare
SO3345 +0.4 1.7 translation initiation factor, putative (NCBI ptt file) compare
SO3056 +0.4 1.9 tetraheme cytochrome c (NCBI ptt file) compare
SO2318 cheY-2 +0.4 1.6 chemotaxis protein CheY (NCBI ptt file) compare
SO2675 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO0760 amt +0.4 2.1 ammonium transporter (NCBI ptt file) compare
SO4599 +0.4 2.5 ribonuclease, T2 family (NCBI ptt file) compare
SO2677 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO2693 +0.4 2.4 prophage MuSo2, tail sheath protein, putative (NCBI ptt file) compare
SO_t078 tRNA-Arg-9 +0.4 1.2 tRNA-Arg (RefSeq) compare
SO3077 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO1294 +0.4 2.2 ribosomal RNA large subunit methyltransferase A, putative (NCBI ptt file) compare
SO2985 O +0.4 1.5 prophage LambdaSo, replication protein O (NCBI ptt file) compare
SO_3038 +0.4 1.1 no description compare
SO1715 +0.4 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO3545 +0.4 2.2 OmpA family protein (NCBI ptt file) compare
SO1619 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO2281 +0.4 1.8 alkaline phosphatase (NCBI ptt file) compare
SO0881 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO1115 pepD +0.4 2.6 dipeptidase (EC 3.4.13.-) (from data) compare
SO2658 +0.4 0.9 hypothetical protein (NCBI ptt file) compare
SO0360 rpoZ +0.4 0.8 DNA-directed RNA polymerase, omega subunit (NCBI ptt file) compare
SO3803 hpt-2 +0.4 1.9 hypoxanthine phosphoribosyltransferase (NCBI ptt file) compare
SO2089 hypA +0.4 0.6 hydrogenase expression/formation protein HypA (NCBI ptt file) compare
SO0430 +0.4 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO4601 mtr +0.4 2.0 tryptophan-specific transport protein (NCBI ptt file) compare
SO3169 +0.4 0.7 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO4449 moaE +0.4 2.7 molybdenum cofactor biosynthesis protein E (NCBI ptt file) compare
SO1486 +0.4 1.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein (NCBI ptt file) compare
SO3864 modB +0.4 1.5 molybdenum ABC transporter, permease protein (NCBI ptt file) compare
SO3242 flgI +0.4 2.1 flagellar P-ring protein FlgI (NCBI ptt file) compare
SO1166 +0.4 1.4 membrane-bound lytic transglycosylase, putative (NCBI ptt file) compare
SO3104 +0.4 0.7 conserved hypothetical protein (NCBI ptt file) compare
SO2012 apt +0.4 1.0 adenine phosphoribosyltransferase (NCBI ptt file) compare
SO2238 ptsH +0.4 0.7 phosphocarrier protein HPr (NCBI ptt file) compare
SO1921 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO2774 fabF-1 +0.4 0.9 3-oxoacyl-(acyl-carrier-protein) synthase II (NCBI ptt file) compare
SO2128 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
SO2894 +0.4 0.8 YaiI/YqxD family protein (NCBI ptt file) compare
SO2185 ppx +0.4 2.1 exopolyphosphatase (NCBI ptt file) compare
SO2688 +0.4 2.2 hypothetical protein (NCBI ptt file) compare
SO3805 mpl +0.4 1.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) compare
SO1677 atoB +0.4 1.5 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) (from data) compare
SO2254 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2245 dnaQ-1 +0.4 0.7 DNA polymerase III, epsilon subunit (NCBI ptt file) compare
SO1691 blc +0.4 0.9 lipoprotein Blc (NCBI ptt file) compare
SO1835 +0.4 0.6 conserved hypothetical protein (NCBI ptt file) compare
SO2146 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO2581 fadD-1 +0.4 2.0 long-chain-fatty-acid--CoA ligase (NCBI ptt file) compare


Specific Phenotypes

For 6 genes in this experiment

For stress 5-Hydroxymethylfurfural in Shewanella oneidensis MR-1

For stress 5-Hydroxymethylfurfural across organisms