Experiment set5H5 for Pseudomonas stutzeri RCH2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Psest_2944 -4.4 -9.8 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0062 -4.0 -6.7 tryptophan synthase, alpha subunit compare
Psest_0498 -3.5 -2.4 ribosome small subunit-dependent GTPase A compare
Psest_2232 -3.5 -20.8 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1496 -3.4 -3.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_1724 -3.1 -5.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3647 -2.9 -9.9 Indole-3-glycerol phosphate synthase compare
Psest_0063 -2.9 -3.9 tryptophan synthase, beta subunit compare
Psest_0958 -2.7 -13.1 Oligoketide cyclase/lipid transport protein compare
Psest_2872 -2.6 -1.7 protein RecA compare
Psest_2945 -2.4 -3.9 septum site-determining protein MinC compare
Psest_0359 -2.4 -2.7 Transcriptional regulators compare
Psest_0542 -2.3 -6.5 AMP nucleosidase compare
Psest_0097 -2.3 -1.5 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1601 -2.2 -1.4 Signal transduction histidine kinase compare
Psest_0094 -2.2 -1.4 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1031 -2.1 -9.2 Uncharacterized protein conserved in bacteria compare
Psest_3648 -2.1 -10.9 anthranilate phosphoribosyltransferase compare
Psest_3123 -2.1 -6.6 dihydroorotase, homodimeric type compare
Psest_0161 -2.1 -1.9 Membrane-bound metallopeptidase compare
Psest_2584 -2.0 -7.8 Phosphoribosylanthranilate isomerase compare
Psest_3129 -2.0 -3.1 tyrosine recombinase XerD compare
Psest_1143 -2.0 -8.7 Small-conductance mechanosensitive channel compare
Psest_3092 -1.9 -2.2 ribonuclease III, bacterial compare
Psest_1814 -1.9 -14.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0279 -1.9 -5.9 methionine biosynthesis protein MetW compare
Psest_2946 -1.9 -6.9 septum site-determining protein MinD compare
Psest_3649 -1.8 -9.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0260 -1.8 -3.1 Cell division protein compare
Psest_4274 -1.8 -5.4 hypothetical protein compare
Psest_3650 -1.7 -11.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3766 -1.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0515 -1.7 -4.5 rare lipoprotein A compare
Psest_2719 -1.7 -5.6 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3810 -1.6 -3.7 orotate phosphoribosyltransferase compare
Psest_1765 -1.6 -8.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0568 -1.6 -2.5 pseudouridine synthase compare
Psest_3702 -1.6 -2.8 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
Psest_4044 -1.6 -9.0 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3767 -1.6 -1.5 tyrosine recombinase XerC compare
Psest_2579 -1.6 -9.1 amidophosphoribosyltransferase compare
Psest_4078 -1.6 -2.4 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1474 -1.5 -9.5 phosphoribosylaminoimidazole synthetase compare
Psest_2316 -1.5 -11.0 phosphoenolpyruvate synthase compare
Psest_0259 -1.5 -2.5 cell division ATP-binding protein FtsE compare
Psest_2001 -1.5 -3.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1505 -1.4 -3.3 Organic radical activating enzymes compare
Psest_0280 -1.4 -9.5 homoserine O-acetyltransferase compare
Psest_1804 -1.4 -4.2 Superfamily II DNA and RNA helicases compare
Psest_1012 -1.4 -4.5 Signal transduction histidine kinase compare
Psest_1452 -1.4 -6.5 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0558 -1.3 -0.9 urease, beta subunit compare
Psest_4201 -1.3 -1.7 general secretion pathway protein F compare
Psest_1510 -1.3 -5.3 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0028 -1.3 -3.5 Coproporphyrinogen III oxidase compare
Psest_0969 -1.3 -3.4 transcription elongation factor GreA compare
Psest_3145 -1.3 -3.3 hypothetical protein compare
Psest_1082 -1.3 -1.2 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3338 -1.3 -1.9 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_4191 -1.2 -1.8 Transcriptional regulator compare
Psest_2229 -1.2 -4.5 Uncharacterized protein conserved in bacteria compare
Psest_1657 -1.2 -3.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0193 -1.2 -1.2 conserved hypothetical protein compare
Psest_0845 -1.2 -0.8 hypothetical protein compare
Psest_0175 -1.2 -5.2 Xaa-Pro aminopeptidase compare
Psest_0719 -1.2 -5.5 Uncharacterized protein conserved in bacteria compare
Psest_4335 -1.2 -2.7 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2578 -1.2 -9.3 O-succinylhomoserine sulfhydrylase compare
Psest_2714 -1.2 -2.3 7-cyano-7-deazaguanine reductase compare
Psest_1472 -1.2 -7.5 Protein of unknown function (DUF3108). compare
Psest_1506 -1.2 -5.6 queuosine biosynthesis protein QueC compare
Psest_0489 -1.2 -3.8 phosphoserine phosphatase SerB compare
Psest_0417 -1.2 -2.9 Acyl-CoA dehydrogenases compare
Psest_1947 -1.2 -4.1 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1704 -1.2 -2.4 Dehydrogenases (flavoproteins) compare
Psest_2325 -1.2 -8.2 alpha-L-glutamate ligase-related protein compare
Psest_3883 -1.1 -4.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2810 -1.1 -5.3 5'/3'-nucleotidase SurE compare
Psest_2358 -1.1 -1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1167 -1.1 -1.5 hypothetical protein compare
Psest_1516 -1.1 -2.1 Uncharacterized lipoprotein compare
Psest_0844 -1.1 -2.9 High-affinity Fe2+/Pb2+ permease compare
Psest_0389 -1.1 -1.9 hypothetical protein compare
Psest_1144 -1.1 -3.6 AmpG-related permease compare
Psest_3159 -1.1 -7.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2025 -1.1 -2.2 cold shock domain protein CspD compare
Psest_2285 -1.1 -3.3 ATP-dependent protease La compare
Psest_3908 -1.1 -1.0 Cytochrome c553 compare
Psest_2037 -1.1 -4.7 uroporphyrin-III C-methyltransferase compare
Psest_2712 -1.1 -5.0 Surface lipoprotein compare
Psest_0744 -1.1 -0.7 Uncharacterized conserved protein compare
Psest_0393 -1.1 -4.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3307 -1.1 -5.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2324 -1.1 -8.3 hypothetical protein compare
Psest_0993 -1.0 -6.9 Glucose-6-phosphate isomerase compare
Psest_3228 -1.0 -6.5 Zn-dependent protease with chaperone function compare
Psest_1447 -1.0 -2.9 Putative threonine efflux protein compare
Psest_3303 -1.0 -4.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0402 -1.0 -1.5 glycosyltransferase, MGT family compare
Psest_0186 -1.0 -2.9 Protein-disulfide isomerase compare
Psest_3664 -1.0 -2.0 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_4307 -1.0 -2.5 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_0401 -1.0 -0.9 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_2323 -1.0 -7.4 Uncharacterized protein conserved in archaea compare
Psest_0691 -1.0 -7.6 ribonuclease R compare
Psest_4222 -1.0 -6.2 Predicted Rossmann fold nucleotide-binding protein compare
Psest_1013 -1.0 -4.8 phosphoribosylamine--glycine ligase compare
Psest_2104 -1.0 -3.0 IscR-regulated protein YhgI compare
Psest_2766 -1.0 -1.5 hypothetical protein compare
Psest_1809 -1.0 -7.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0313 -1.0 -3.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4004 -1.0 -1.7 Uncharacterized conserved protein compare
Psest_3306 -1.0 -4.1 conserved hypothetical integral membrane protein compare
Psest_1103 -1.0 -3.2 GTP-binding protein YchF compare
Psest_3626 -0.9 -4.3 hypothetical protein compare
Psest_1428 -0.9 -1.8 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1111 -0.9 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3571 -0.9 -6.1 Outer membrane protein W compare
Psest_3692 -0.9 -1.5 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_0133 -0.9 -1.8 type VI secretion protein, VC_A0107 family compare
Psest_3637 -0.9 -3.8 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_1643 -0.9 -1.6 hypothetical protein compare
Psest_2011 -0.9 -6.6 Predicted permease compare
Psest_2581 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3524 -0.9 -2.4 ribose-phosphate pyrophosphokinase compare
Psest_0508 -0.9 -4.6 gamma-glutamyl phosphate reductase compare
Psest_1813 -0.9 -6.7 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0442 -0.9 -5.4 ATPases of the AAA+ class compare
Psest_0277 -0.9 -1.4 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3305 -0.9 -4.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0644 -0.9 -1.4 siderophore ferric iron reductase, AHA_1954 family compare
Psest_2809 -0.9 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1602 -0.9 -0.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0516 -0.9 -5.7 D-alanyl-D-alanine carboxypeptidase compare
Psest_2088 -0.9 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3860 -0.8 -2.7 Predicted permeases compare
Psest_1663 -0.8 -2.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3317 -0.8 -3.5 Phosphotransferase System HPr (HPr) Family compare
Psest_4345 -0.8 -4.8 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_3435 -0.8 -4.9 hypothetical protein compare
Psest_2585 -0.8 -1.7 pseudouridylate synthase I compare
Psest_4219 -0.8 -0.7 DNA polymerase I compare
Psest_0533 -0.8 -3.0 Sel1 repeat. compare
Psest_2122 -0.8 -0.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2018 -0.8 -3.8 Uncharacterized conserved protein compare
Psest_1873 -0.8 -2.2 Predicted permease, DMT superfamily compare
Psest_0678 -0.8 -1.3 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_0843 -0.8 -5.0 hypothetical protein compare
Psest_1491 -0.8 -1.9 Cold shock proteins compare
Psest_1349 -0.8 -1.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_4108 -0.8 -1.7 seryl-tRNA(sec) selenium transferase compare
Psest_3910 -0.8 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0450 -0.8 -4.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
Psest_0708 -0.8 -1.5 outer membrane assembly lipoprotein YfiO compare
Psest_2532 -0.8 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_3998 -0.8 -2.2 glutamate--cysteine ligase compare
Psest_4393 -0.8 -4.5 Capsule polysaccharide export protein compare
Psest_4220 -0.8 -1.1 Protein of unknown function (DUF2782). compare
Psest_1913 -0.8 -1.8 Transcriptional regulator compare
Psest_1999 -0.8 -1.6 pseudouridine synthase compare
Psest_2538 -0.8 -2.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3861 -0.8 -2.5 Uncharacterized conserved protein compare
Psest_3118 -0.7 -4.7 endonuclease III compare
Psest_1242 -0.7 -2.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3862 -0.7 -5.0 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0697 -0.7 -3.9 ribosomal protein L9 compare
Psest_1295 -0.7 -4.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1509 -0.7 -4.7 quinolinate synthetase complex, A subunit compare
Psest_2565 -0.7 -1.4 Transcriptional regulator compare
Psest_1598 -0.7 -2.0 heavy metal response regulator compare
Psest_2414 -0.7 -1.2 TolR protein compare
Psest_3304 -0.7 -3.5 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1600 -0.7 -1.2 hypothetical protein compare
Psest_3070 -0.7 -1.9 3-oxoadipyl-CoA thiolase compare
Psest_0673 -0.7 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0181 -0.7 -3.2 glycine cleavage system T protein compare
Psest_0846 -0.7 -1.4 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_0722 -0.7 -4.5 Predicted ATPase compare
Psest_2757 -0.7 -1.3 hypothetical protein compare
Psest_2360 -0.7 -1.3 Uncharacterized protein, putative amidase compare
Psest_4256 -0.7 -1.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1145 -0.7 -2.3 Predicted methylated DNA-protein cysteine methyltransferase compare
Psest_3384 -0.7 -4.2 glutamate 5-kinase compare
Psest_1473 -0.7 -4.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1079 -0.7 -1.8 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_3556 -0.7 -1.8 2'-5' RNA ligase compare
Psest_2411 -0.7 -3.0 PAS domain S-box compare
Psest_2589 -0.7 -5.1 3-isopropylmalate dehydrogenase compare
Psest_0413 -0.7 -3.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1656 -0.7 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_4298 -0.7 -0.5 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2293 -0.7 -1.8 hypothetical protein compare
Psest_3790 -0.7 -3.9 Cytochrome c5 compare
Psest_2566 -0.7 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_3477 -0.7 -1.2 Signal transduction histidine kinase compare
Psest_0325 -0.7 -5.6 Putative threonine efflux protein compare
Psest_3732 -0.7 -3.5 polyphosphate kinase 1 compare
Psest_3361 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0412 -0.7 -3.9 8-amino-7-oxononanoate synthase compare
Psest_0114 -0.7 -0.8 RNA polymerase sigma factor, sigma-70 family compare


Specific Phenotypes

For 1 genes in this experiment