Experiment set5H5 for Shewanella amazonensis SB2B

Compare to:

LB with Carbenicillin disodium salt 0.00195312 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Sama_1177 +10.6 23.8 proton-dependent oligopeptide transporter (POT) family protein (RefSeq) compare
Sama_1234 +6.0 15.6 peptide ABC transporter, permease protein (RefSeq) compare
Sama_2435 +5.0 17.2 geranyltranstransferase (RefSeq) compare
Sama_1232 +5.0 13.1 peptide ABC transporter, ATP-binding protein (RefSeq) compare
Sama_3090 +4.6 16.1 nitrogen regulatory IIA protein (RefSeq) compare
Sama_1394 +4.5 29.2 TonB-dependent receptor, plug (RefSeq) compare
Sama_1231 +4.2 9.8 peptide ABC transporter, ATP-binding protein (RefSeq) compare
Sama_3088 +4.0 28.3 RNA polymerase factor sigma-54 (RefSeq) compare
Sama_2673 +3.8 6.1 hypothetical protein (RefSeq) compare
Sama_1235 +3.4 10.2 peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) compare
Sama_1422 gltA +3.3 22.7 type II citrate synthase (RefSeq) compare
Sama_1233 +3.2 5.7 peptide ABC transporter, permease protein (RefSeq) compare
Sama_1259 +3.2 14.9 TPR domain-containing protein (RefSeq) compare
Sama_1909 +3.2 10.6 glycine cleavage system transcriptional repressor, putative (RefSeq) compare
Sama_3203 +2.9 4.4 hypothetical protein (RefSeq) compare
Sama_1258 +2.8 7.5 TonB-like protein (RefSeq) compare
Sama_3427 +2.7 19.1 response regulator receiver protein (RefSeq) compare
Sama_1255 +2.6 7.6 MotA/TolQ/ExbB proton channel family protein (RefSeq) compare
Sama_3426 +2.5 11.7 nitrogen regulation protein (RefSeq) compare
Sama_0871 +2.4 6.9 hypothetical protein (RefSeq) compare
Sama_3297 +2.3 2.7 hypothetical protein (RefSeq) compare
Sama_3019 +2.2 9.1 ubiquinol-cytochrome c reductase cytochrome c1 subunit (RefSeq) compare
Sama_1796 +2.2 15.1 cation transporter E1-E2 family ATPase (RefSeq) compare
Sama_0887 +2.1 3.4 hypothetical protein (RefSeq) compare
Sama_1254 +2.0 5.9 hypothetical protein (RefSeq) compare
Sama_1798 +1.9 9.0 hypothetical protein (RefSeq) compare
Sama_1795 +1.9 8.2 hypothetical protein (RefSeq) compare
Sama_2798 +1.9 9.7 putative outer membrane protein (RefSeq) compare
Sama_0672 +1.8 9.2 malate dehydrogenase (RefSeq) compare
Sama_0264 +1.8 4.9 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Sama_3020 +1.8 13.5 ubiquinol-cytochrome c reductase, cytochrome b (RefSeq) compare
Sama_1325 +1.7 9.6 L-serine ammonia-lyase (RefSeq) compare
Sama_3363 +1.7 1.7 hypothetical protein (RefSeq) compare
Sama_0091 +1.7 10.6 cytochrome c, class I (RefSeq) compare
Sama_1794 +1.6 9.0 cytochrome c oxidase, cbb3-type, subunit III (RefSeq) compare
Sama_3021 +1.5 8.4 ubiquinol--cytochrome-c reductase (RefSeq) compare
Sama_1777 +1.5 1.4 hypothetical protein (RefSeq) compare
Sama_1720 +1.5 3.0 hypothetical protein (RefSeq) compare
Sama_1137 +1.5 7.3 PII uridylyl-transferase (RefSeq) compare
Sama_1790 +1.5 7.9 hypothetical protein (RefSeq) compare
Sama_2410 +1.5 5.6 hypothetical protein (RefSeq) compare
Sama_R0118 +1.4 4.3 tRNA-Gly (RefSeq) compare
Sama_3633 +1.4 12.5 iron-sulfur cluster-binding protein (RefSeq) compare
Sama_0534 +1.4 6.0 hypothetical protein (RefSeq) compare
Sama_0876 +1.4 5.5 putative sigma E regulatory protein, MucB/RseB (RefSeq) compare
Sama_1352 +1.3 2.9 hypothetical protein (RefSeq) compare
Sama_2013 +1.3 2.7 hypothetical protein (RefSeq) compare
Sama_1601 +1.3 3.0 hypothetical protein (RefSeq) compare
Sama_1791 +1.3 9.1 cytochrome c oxidase, cbb3-type, subunit I (RefSeq) compare
Sama_3225 +1.1 4.3 tRNA-dihydrouridine synthase B (RefSeq) compare
Sama_3216 +1.1 2.6 thioredoxin (RefSeq) compare
Sama_1792 +1.1 5.4 cytochrome c oxidase, cbb3-type, subunit II (RefSeq) compare
Sama_0249 +1.1 6.0 thiol:disulfide interchange protein DsbE (RefSeq) compare
Sama_0050 +1.1 7.0 coproporphyrinogen III oxidase (RefSeq) compare
Sama_1348 +1.0 2.3 hypothetical protein (RefSeq) compare
Sama_2162 +1.0 4.0 putative phosphohistidine phosphatase, SixA (RefSeq) compare
Sama_0246 +1.0 6.4 cytochrome c (RefSeq) compare
Sama_3089 +1.0 3.5 ribosomal subunit interface protein (RefSeq) compare
Sama_3158 +1.0 1.5 histone-like DNA-binding protein (RefSeq) compare
Sama_2121 +0.9 2.9 short chain dehydrogenase (RefSeq) compare
Sama_2041 +0.9 3.0 type IV pilus biogenesis protein pilZ (RefSeq) compare
Sama_3018 sspA +0.9 3.0 stringent starvation protein A (RefSeq) compare
Sama_R0028 +0.9 1.8 tRNA-Thr (RefSeq) compare
Sama_0248 +0.8 5.3 cytochrome c-type biogenesis protein CcmF (RefSeq) compare
Sama_1503 +0.8 5.8 outer membrane receptor protein (RefSeq) compare
Sama_3207 +0.8 3.3 Sec-independent periplasmic protein translocation protein TatC (RefSeq) compare
Sama_3194 +0.8 3.1 3-dehydroquinate dehydratase (RefSeq) compare
Sama_1100 +0.8 1.7 acetyltransferase (RefSeq) compare
Sama_0241 +0.8 3.0 cytochrome c-type biogenesis protein CcmE (RefSeq) compare
Sama_1594 +0.7 1.6 hypothetical protein (RefSeq) compare
Sama_2995 +0.7 3.3 hypothetical protein (RefSeq) compare
Sama_1746 +0.7 1.5 hypothetical protein (RefSeq) compare
Sama_1238 pspB +0.7 1.4 phage shock protein B (RefSeq) compare
Sama_3323 +0.7 2.2 hypothetical protein (RefSeq) compare
Sama_1826 +0.7 1.3 ExsB protein (RefSeq) compare
Sama_2260 +0.7 3.2 UDP-glucose/GDP-mannose dehydrogenase (RefSeq) compare
Sama_1493 +0.7 2.2 hypothetical protein (RefSeq) compare
Sama_1634 +0.7 2.1 hypothetical protein (RefSeq) compare
Sama_2587 +0.7 1.3 rRNA large subunit methyltransferase (RefSeq) compare
Sama_2322 +0.7 2.0 putative anti-sigma-28 factor, FlgM (RefSeq) compare
Sama_1558 +0.6 2.6 hypothetical protein (RefSeq) compare
Sama_1580 +0.6 2.2 paraquat-inducible protein A (RefSeq) compare
Sama_0833 +0.6 1.3 major outer membrane lipoprotein, putative (RefSeq) compare
Sama_1017 +0.6 3.5 riboflavin synthase subunit alpha (RefSeq) compare
Sama_2138 +0.6 1.5 YciI-like protein (RefSeq) compare
Sama_2297 fliF +0.6 3.4 flagellar MS-ring protein (RefSeq) compare
Sama_1799 +0.6 2.2 fumarate/nitrate reduction transcriptional regulator (RefSeq) compare
Sama_1237 +0.6 1.6 phage shock protein A (RefSeq) compare
Sama_1354 +0.6 2.3 hypothetical protein (RefSeq) compare
Sama_3631 +0.6 3.9 amino acid transporter LysE (RefSeq) compare
Sama_1226 +0.6 3.3 endopeptidase La (RefSeq) compare
Sama_1350 +0.6 1.6 hypothetical protein (RefSeq) compare
Sama_1492 +0.6 2.0 hypothetical protein (RefSeq) compare
Sama_1711 +0.6 2.3 dihydrolipoamide acetyltransferase (RefSeq) compare
Sama_1986 +0.6 2.7 septum formation protein Maf (RefSeq) compare
Sama_2250 +0.6 1.3 acetoacetyl-CoA reductase (RefSeq) compare
Sama_0869 +0.6 1.6 hypothetical protein (RefSeq) compare
Sama_2872 +0.6 2.9 hypothetical protein (RefSeq) compare
Sama_1879 +0.6 2.7 hypothetical protein (RefSeq) compare
Sama_2037 +0.5 1.8 anti-ECFsigma factor, ChrR (RefSeq) compare
Sama_0553 +0.5 2.6 no description compare
Sama_2293 +0.5 2.7 flagellar protein FliJ (RefSeq) compare
Sama_0932 +0.5 2.6 type IV pilus biogenesis protein PilE (RefSeq) compare
Sama_1484 +0.5 2.4 hypothetical protein (RefSeq) compare
Sama_1243 +0.5 1.2 DNA uptake protein-related DNA-binding protein (RefSeq) compare
Sama_1793 +0.5 1.9 cytochrome c oxidase, cbb3-type, CcoQ subunit (RefSeq) compare
Sama_1807 +0.5 2.5 hypothetical protein (RefSeq) compare
Sama_3528 +0.5 2.5 molybdenum cofactor biosynthesis protein E (RefSeq) compare
Sama_3353 +0.5 2.5 hypothetical protein (RefSeq) compare
Sama_1270 +0.5 1.4 hypothetical protein (RefSeq) compare
Sama_0376 aceF +0.5 1.8 dihydrolipoamide acetyltransferase (RefSeq) compare
Sama_3280 ilvM +0.5 2.7 acetolactate synthase 2 regulatory subunit (RefSeq) compare
Sama_3306 +0.5 3.9 hypothetical protein (RefSeq) compare
Sama_2065 +0.5 2.4 cupin 4 (RefSeq) compare
Sama_0001 +0.5 2.0 flavodoxin (RefSeq) compare
Sama_2188 +0.5 1.6 rhodanese-like protein (RefSeq) compare
Sama_0902 +0.5 2.0 putative Trp operon repressor (RefSeq) compare
Sama_0243 +0.5 1.6 heme exporter protein CcmC (RefSeq) compare
Sama_1637 +0.5 1.3 acetyltransferase (RefSeq) compare
Sama_2280 fliA +0.5 2.5 flagellar biosynthesis sigma factor (RefSeq) compare
Sama_1907 +0.5 1.9 lipoprotein-34 NlpB (RefSeq) compare
Sama_0367 +0.5 0.9 prepilin peptidase (RefSeq) compare
Sama_2581 +0.5 1.3 hypothetical protein (RefSeq) compare
Sama_1444 +0.5 0.9 cytochrome c3 (RefSeq) compare
Sama_2461 +0.5 0.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein (RefSeq) compare
Sama_1910 bcp +0.5 1.4 thioredoxin-dependent thiol peroxidase (RefSeq) compare
Sama_2826 +0.5 2.1 hypothetical protein (RefSeq) compare
Sama_0390 +0.5 0.9 hypothetical protein (RefSeq) compare
Sama_2385 +0.5 0.7 small protein A (RefSeq) compare
Sama_3068 +0.5 3.5 sodium-type flagellar protein MotX (RefSeq) compare
Sama_2312 flgH +0.5 2.1 flagellar basal body L-ring protein (RefSeq) compare
Sama_0242 +0.5 1.5 heme exporter protein CcmD (RefSeq) compare
Sama_0244 +0.5 2.2 heme exporter protein CcmB (RefSeq) compare
Sama_3077 +0.5 1.4 SpoIIAA family protein (RefSeq) compare
Sama_0623 +0.5 1.2 hypothetical protein (RefSeq) compare
Sama_1816 +0.5 2.3 TetR family transcriptional regulator (RefSeq) compare
Sama_1997 +0.5 2.4 LysR family transcriptional regulator (RefSeq) compare
Sama_1373 +0.5 1.1 hypothetical protein (RefSeq) compare
Sama_3330 +0.5 1.9 hypothetical protein (RefSeq) compare
Sama_1725 +0.5 1.6 hypothetical protein (RefSeq) compare
Sama_2279 +0.5 1.8 response regulator receiver protein (RefSeq) compare
Sama_1721 +0.5 1.0 hypothetical protein (RefSeq) compare
Sama_2020 +0.5 1.8 16 kDa heat shock protein A (RefSeq) compare
Sama_3195 +0.5 0.8 acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq) compare
Sama_2103 +0.5 1.4 putative 5-carboxymethyl-2-hydroxymuconate D-isomerase (RefSeq) compare
Sama_0179 +0.5 2.5 general secretion pathway protein N (RefSeq) compare
Sama_2612 +0.5 1.7 hypothetical protein (RefSeq) compare
Sama_1013 +0.5 2.3 putative ABC transporter ATP-binding protein (RefSeq) compare
Sama_0052 +0.4 3.2 shikimate dehydrogenase (RefSeq) compare
Sama_0173 +0.4 0.7 general secretion pathway protein H (RefSeq) compare
Sama_1341 +0.4 1.2 alkylhydroperoxidase (RefSeq) compare
Sama_2686 +0.4 1.4 putative lipoprotein (RefSeq) compare
Sama_2791 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_3584 +0.4 2.2 hypothetical protein (RefSeq) compare
Sama_2434 +0.4 1.0 exodeoxyribonuclease VII, small subunit (RefSeq) compare
Sama_0059 +0.4 3.0 M24/M37 family peptidase (RefSeq) compare
Sama_2218 +0.4 1.3 maleylacetoacetate isomerase (RefSeq) compare
Sama_1702 +0.4 1.6 LexA regulated protein (RefSeq) compare
Sama_2433 +0.4 2.4 flagellar motor protein PomA (RefSeq) compare
Sama_1819 +0.4 1.6 hypothetical protein (RefSeq) compare
Sama_1265 +0.4 1.3 hypothetical protein (RefSeq) compare
Sama_0145 +0.4 1.9 endonuclease (RefSeq) compare
Sama_0645 +0.4 2.0 hypothetical protein (RefSeq) compare
Sama_2000 +0.4 2.2 hypothetical protein (RefSeq) compare
Sama_0247 +0.4 3.4 cytochrome c-type biogenesis protein CcmH (RefSeq) compare
Sama_0279 +0.4 3.4 hypothetical protein (RefSeq) compare
Sama_2127 +0.4 1.6 Sua5/YciO/YrdC/YwlC family protein (RefSeq) compare
Sama_1247 +0.4 1.6 primosomal replication protein N'', putative (RefSeq) compare
Sama_3305 +0.4 2.1 hypothetical protein (RefSeq) compare
Sama_1290 +0.4 2.7 RNA methyltransferase (RefSeq) compare
Sama_2318 flgB +0.4 1.5 flagellar basal body rod protein FlgB (RefSeq) compare
Sama_2948 +0.4 2.1 response regulator receiver protein (RefSeq) compare
Sama_0250 +0.4 2.7 cytochrome c-type biogenesis protein CcmH (RefSeq) compare
Sama_2494 +0.4 1.9 cytochrome b561 (RefSeq) compare
Sama_2219 +0.4 1.8 fumarylacetoacetate hydrolase family protein (RefSeq) compare
Sama_0493 +0.4 2.0 transcriptional regulator (RefSeq) compare
Sama_1336 +0.4 3.1 DNA internalization-related competence protein ComEC/Rec2 (RefSeq) compare
Sama_0307 +0.4 2.1 hypothetical protein (RefSeq) compare
Sama_1085 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_R0029 +0.4 1.3 5S ribosomal RNA (RefSeq) compare
Sama_3467 +0.4 2.0 cell division ABC transporter, ATP-binding protein FtsE (RefSeq) compare
Sama_0275 +0.4 2.4 glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq) compare
Sama_2216 +0.4 1.3 hypothetical protein (RefSeq) compare
Sama_2051 +0.4 1.1 hypothetical protein (RefSeq) compare
Sama_R0069 +0.4 0.7 tRNA-Gly (RefSeq) compare
Sama_2092 +0.4 2.8 OmpA/MotB (RefSeq) compare
Sama_3574 +0.4 2.2 GntR family transcriptional regulator (RefSeq) compare
Sama_1960 +0.4 1.5 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Sama_1286 +0.4 1.2 hypothetical protein (RefSeq) compare
Sama_1306 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_2780 +0.4 2.2 hypothetical protein (RefSeq) compare
Sama_0930 +0.4 1.5 type IV pilus assembly protein PilX (RefSeq) compare
Sama_2259 +0.4 1.5 MviM protein (RefSeq) compare
Sama_1729 +0.4 1.6 phosphoglycolate phosphatase (RefSeq) compare
Sama_3402 +0.4 1.4 D-tyrosyl-tRNA(Tyr) deacylase (RefSeq) compare
Sama_0705 +0.4 1.0 hypothetical protein (RefSeq) compare
Sama_2491 +0.4 1.1 hypothetical protein (RefSeq) compare
Sama_0364 +0.4 0.7 hypothetical protein (RefSeq) compare
Sama_0404 +0.4 2.6 acetyltransferase (RefSeq) compare
Sama_2901 +0.4 2.1 hypothetical protein (RefSeq) compare


Specific Phenotypes

For 2 genes in this experiment

For stress Carbenicillin disodium salt in Shewanella amazonensis SB2B

For stress Carbenicillin disodium salt across organisms