Experiment set5H43 for Pseudomonas stutzeri RCH2

Compare to:

Glucose defined 30C timecourse1 timepoint 3

200 most important genes:

  gene name fitness t score description  
Psest_0325 -7.3 -16.3 Putative threonine efflux protein compare
Psest_1473 -7.1 -4.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3647 -7.1 -4.9 Indole-3-glycerol phosphate synthase compare
Psest_2329 -6.8 -13.9 Transcriptional regulator compare
Psest_2591 -6.6 -4.6 3-isopropylmalate dehydratase, large subunit compare
Psest_0442 -6.6 -4.5 ATPases of the AAA+ class compare
Psest_2578 -6.4 -8.7 O-succinylhomoserine sulfhydrylase compare
Psest_1037 -6.3 -4.4 acetolactate synthase, small subunit compare
Psest_0508 -6.3 -4.4 gamma-glutamyl phosphate reductase compare
Psest_0279 -6.3 -4.4 methionine biosynthesis protein MetW compare
Psest_2584 -6.3 -4.3 Phosphoribosylanthranilate isomerase compare
Psest_3648 -6.2 -4.3 anthranilate phosphoribosyltransferase compare
Psest_3818 -6.1 -4.2 endoribonuclease L-PSP, putative compare
Psest_1896 -6.0 -4.1 ABC-type sugar transport system, periplasmic component compare
Psest_2590 -6.0 -2.9 3-isopropylmalate dehydratase, small subunit compare
Psest_3650 -6.0 -7.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3384 -5.9 -4.1 glutamate 5-kinase compare
Psest_1805 -5.9 -4.0 integration host factor, beta subunit compare
Psest_1295 -5.8 -4.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3864 -5.8 -9.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1895 -5.7 -3.9 Signal transduction histidine kinase compare
Psest_0153 -5.6 -3.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0326 -5.6 -13.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1772 -5.6 -5.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3866 -5.5 -9.2 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2589 -5.5 -15.0 3-isopropylmalate dehydrogenase compare
Psest_3649 -5.5 -9.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_4086 -5.4 -10.4 Transcriptional regulator compare
Psest_1897 -5.4 -5.3 ABC-type sugar transport systems, permease components compare
Psest_0687 -5.4 -10.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0155 -5.4 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_4085 -5.3 -16.3 Biotin carboxylase compare
Psest_4084 -5.3 -12.7 oxaloacetate decarboxylase alpha subunit compare
Psest_3299 -5.3 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3322 -5.2 -11.2 TIGR02099 family protein compare
Psest_1898 -5.2 -3.6 ABC-type sugar transport system, permease component compare
Psest_3298 -5.1 -9.8 histidinol dehydrogenase compare
Psest_1974 -5.1 -7.0 integration host factor, alpha subunit compare
Psest_0152 -5.1 -4.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_3297 -5.1 -8.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3190 -5.0 -3.5 pyruvate kinase compare
Psest_0280 -5.0 -16.8 homoserine O-acetyltransferase compare
Psest_0958 -5.0 -14.0 Oligoketide cyclase/lipid transport protein compare
Psest_1686 -4.9 -8.2 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1474 -4.9 -3.4 phosphoribosylaminoimidazole synthetase compare
Psest_2333 -4.9 -2.3 Protein of unknown function (DUF3359). compare
Psest_0999 -4.8 -3.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0489 -4.8 -3.3 phosphoserine phosphatase SerB compare
Psest_3810 -4.8 -3.3 orotate phosphoribosyltransferase compare
Psest_2719 -4.8 -7.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2579 -4.7 -4.6 amidophosphoribosyltransferase compare
Psest_0062 -4.7 -7.9 tryptophan synthase, alpha subunit compare
Psest_3178 -4.7 -6.4 formyltetrahydrofolate deformylase compare
Psest_0411 -4.6 -7.7 biotin synthetase compare
Psest_1994 -4.5 -6.9 Amidases related to nicotinamidase compare
Psest_3159 -4.4 -14.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1947 -4.2 -2.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1452 -4.1 -4.9 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1013 -4.0 -3.9 phosphoribosylamine--glycine ligase compare
Psest_0852 -4.0 -2.7 glucose-6-phosphate 1-dehydrogenase compare
Psest_0849 -3.9 -2.7 6-phosphogluconate dehydratase compare
Psest_0850 -3.9 -3.8 glucokinase, proteobacterial type compare
Psest_2988 -3.9 -12.9 aspartate kinase, monofunctional class compare
Psest_4088 -3.9 -3.7 Transcriptional regulators compare
Psest_3944 -3.8 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1899 -3.6 -7.4 ABC-type sugar transport systems, ATPase components compare
Psest_0313 -3.6 -4.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2712 -3.6 -8.7 Surface lipoprotein compare
Psest_0063 -3.6 -3.5 tryptophan synthase, beta subunit compare
Psest_2104 -3.6 -4.8 IscR-regulated protein YhgI compare
Psest_0855 -3.6 -2.4 NAD-dependent aldehyde dehydrogenases compare
Psest_1704 -3.5 -4.7 Dehydrogenases (flavoproteins) compare
Psest_0466 -3.4 -6.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3123 -3.4 -7.0 dihydroorotase, homodimeric type compare
Psest_0853 -3.2 -2.2 6-phosphogluconolactonase compare
Psest_3226 -3.1 -1.5 Predicted membrane protein compare
Psest_3664 -3.1 -4.5 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0413 -3.0 -10.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2975 -3.0 -6.3 tRNA_Arg_CCT compare
Psest_2944 -3.0 -9.1 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_3943 -2.9 -3.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0498 -2.9 -2.7 ribosome small subunit-dependent GTPase A compare
Psest_3998 -2.8 -3.7 glutamate--cysteine ligase compare
Psest_2325 -2.7 -14.5 alpha-L-glutamate ligase-related protein compare
Psest_1012 -2.7 -8.1 Signal transduction histidine kinase compare
Psest_3637 -2.7 -7.6 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_0414 -2.7 -7.0 biotin biosynthesis protein BioC compare
Psest_1000 -2.6 -10.6 PAS domain S-box compare
Psest_1144 -2.6 -6.2 AmpG-related permease compare
Psest_0306 -2.6 -17.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3862 -2.5 -14.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2324 -2.5 -18.5 hypothetical protein compare
Psest_2643 -2.5 -4.7 Beta-glucosidase-related glycosidases compare
Psest_2714 -2.5 -4.3 7-cyano-7-deazaguanine reductase compare
Psest_3307 -2.4 -10.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0412 -2.4 -11.1 8-amino-7-oxononanoate synthase compare
Psest_1505 -2.4 -4.9 Organic radical activating enzymes compare
Psest_0170 -2.4 -7.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_3351 -2.4 -9.2 peptide chain release factor 3 compare
Psest_0327 -2.4 -4.3 Transcriptional regulator compare
Psest_3304 -2.4 -7.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1277 -2.3 -13.7 2-isopropylmalate synthase, yeast type compare
Psest_2967 -2.3 -1.9 flagellar basal-body rod protein FlgC compare
Psest_0415 -2.3 -6.1 dethiobiotin synthase compare
Psest_1031 -2.2 -10.1 Uncharacterized protein conserved in bacteria compare
Psest_3303 -2.2 -8.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1660 -2.2 -4.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3305 -2.2 -9.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2531 -2.2 -15.6 cytochrome c oxidase accessory protein FixG compare
Psest_2323 -2.1 -13.5 Uncharacterized protein conserved in archaea compare
Psest_0207 -2.1 -2.4 hypothetical protein compare
Psest_2532 -2.1 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_3565 -2.1 -2.3 hypothetical protein compare
Psest_3306 -2.0 -5.2 conserved hypothetical integral membrane protein compare
Psest_0193 -2.0 -1.7 conserved hypothetical protein compare
Psest_1661 -2.0 -4.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2232 -2.0 -14.3 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2809 -2.0 -4.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0359 -1.9 -3.3 Transcriptional regulators compare
Psest_1506 -1.9 -6.8 queuosine biosynthesis protein QueC compare
Psest_3129 -1.9 -2.7 tyrosine recombinase XerD compare
Psest_3710 -1.8 -13.0 glutamate synthase small subunit family protein, proteobacterial compare
Psest_1814 -1.8 -12.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1472 -1.8 -10.2 Protein of unknown function (DUF3108). compare
Psest_1496 -1.8 -2.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_4191 -1.8 -3.2 Transcriptional regulator compare
Psest_0208 -1.8 -7.0 Uncharacterized protein conserved in bacteria compare
Psest_1765 -1.8 -6.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3790 -1.8 -9.0 Cytochrome c5 compare
Psest_2946 -1.8 -6.8 septum site-determining protein MinD compare
Psest_0417 -1.7 -3.6 Acyl-CoA dehydrogenases compare
Psest_0870 -1.7 -7.0 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_1001 -1.7 -3.9 hypothetical protein compare
Psest_1663 -1.7 -5.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_1242 -1.7 -3.8 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2527 -1.7 -8.3 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3317 -1.7 -4.4 Phosphotransferase System HPr (HPr) Family compare
Psest_2810 -1.6 -4.7 5'/3'-nucleotidase SurE compare
Psest_3766 -1.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_1111 -1.6 -2.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1241 -1.6 -7.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0718 -1.5 -4.4 nicotinate-nucleotide pyrophosphorylase compare
Psest_3419 -1.5 -7.9 Predicted transcriptional regulators compare
Psest_3573 -1.5 -4.9 dTDP-4-dehydrorhamnose reductase compare
Psest_2067 -1.5 -2.1 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0374 -1.5 -6.0 5-dehydro-4-deoxyglucarate dehydratase compare
Psest_1103 -1.5 -4.7 GTP-binding protein YchF compare
Psest_2001 -1.5 -3.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2872 -1.5 -3.3 protein RecA compare
Psest_2651 -1.5 -4.7 DNA topoisomerase I, bacterial compare
Psest_2507 -1.5 -10.1 Flagellin and related hook-associated proteins compare
Psest_1292 -1.4 -8.8 monothiol glutaredoxin, Grx4 family compare
Psest_2504 -1.4 -6.5 flagellar biosynthetic protein FliS compare
Psest_1655 -1.4 -6.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3711 -1.4 -11.2 Glutamate synthase domain 2 compare
Psest_1905 -1.4 -2.2 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_0259 -1.4 -2.6 cell division ATP-binding protein FtsE compare
Psest_3626 -1.4 -7.0 hypothetical protein compare
Psest_3146 -1.4 -3.7 hypothetical protein compare
Psest_2083 -1.4 -7.5 Putative sterol carrier protein compare
Psest_0445 -1.3 -10.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0722 -1.3 -8.6 Predicted ATPase compare
Psest_0969 -1.3 -4.1 transcription elongation factor GreA compare
Psest_4363 -1.3 -7.4 ATPases involved in chromosome partitioning compare
Psest_1824 -1.3 -4.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1809 -1.3 -9.1 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1510 -1.3 -5.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3767 -1.3 -2.8 tyrosine recombinase XerC compare
Psest_0697 -1.3 -5.8 ribosomal protein L9 compare
Psest_1999 -1.3 -2.7 pseudouridine synthase compare
Psest_0284 -1.2 -8.5 pyridoxal phosphate enzyme, YggS family compare
Psest_1822 -1.2 -7.7 Glycosyltransferases involved in cell wall biogenesis compare
Psest_2968 -1.2 -4.6 flagellar basal-body rod protein FlgB compare
Psest_1601 -1.2 -1.3 Signal transduction histidine kinase compare
Psest_1167 -1.2 -1.7 hypothetical protein compare
Psest_1819 -1.2 -10.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_4393 -1.2 -5.2 Capsule polysaccharide export protein compare
Psest_0281 -1.2 -6.9 Dynamin family. compare
Psest_1744 -1.2 -6.4 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_2566 -1.2 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0709 -1.2 -8.2 pseudouridine synthase, RluA family compare
Psest_3960 -1.2 -2.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0292 -1.2 -1.5 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0691 -1.2 -9.0 ribonuclease R compare
Psest_1656 -1.2 -3.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2945 -1.2 -2.2 septum site-determining protein MinC compare
Psest_4405 -1.1 -1.6 hypothetical protein compare
Psest_0297 -1.1 -3.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3872 -1.1 -5.9 FAD/FMN-containing dehydrogenases compare
Psest_3927 -1.1 -4.7 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2023 -1.1 -5.0 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_4201 -1.1 -1.6 general secretion pathway protein F compare
Psest_1080 -1.1 -4.3 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_4310 -1.1 -2.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0533 -1.1 -4.5 Sel1 repeat. compare
Psest_0845 -1.1 -0.8 hypothetical protein compare
Psest_3213 -1.0 -4.7 acetate kinase compare
Psest_1804 -1.0 -3.4 Superfamily II DNA and RNA helicases compare
Psest_3044 -1.0 -5.9 deoxycytidine triphosphate deaminase compare
Psest_2641 -1.0 -7.1 Conserved secreted protein compare


Specific Phenotypes

For 3 genes in this experiment