Experiment set5H42 for Pseudomonas stutzeri RCH2

Compare to:

Glucose defined 30C timecourse1 timepoint 2

200 most important genes:

  gene name fitness t score description  
Psest_0325 -7.1 -17.3 Putative threonine efflux protein compare
Psest_3647 -7.0 -4.9 Indole-3-glycerol phosphate synthase compare
Psest_2591 -6.5 -4.5 3-isopropylmalate dehydratase, large subunit compare
Psest_0279 -6.3 -4.3 methionine biosynthesis protein MetW compare
Psest_1473 -6.2 -9.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2578 -6.2 -8.5 O-succinylhomoserine sulfhydrylase compare
Psest_3648 -6.2 -4.3 anthranilate phosphoribosyltransferase compare
Psest_2584 -6.2 -4.3 Phosphoribosylanthranilate isomerase compare
Psest_0508 -6.0 -5.8 gamma-glutamyl phosphate reductase compare
Psest_3384 -5.9 -4.1 glutamate 5-kinase compare
Psest_3650 -5.7 -9.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0326 -5.7 -11.5 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3864 -5.6 -10.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0153 -5.6 -3.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1895 -5.6 -3.9 Signal transduction histidine kinase compare
Psest_1896 -5.5 -5.3 ABC-type sugar transport system, periplasmic component compare
Psest_1772 -5.5 -5.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3649 -5.5 -9.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3866 -5.4 -11.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0155 -5.4 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1897 -5.3 -5.2 ABC-type sugar transport systems, permease components compare
Psest_1295 -5.3 -7.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1037 -5.3 -5.1 acetolactate synthase, small subunit compare
Psest_3298 -5.3 -8.8 histidinol dehydrogenase compare
Psest_2589 -5.2 -15.4 3-isopropylmalate dehydrogenase compare
Psest_0687 -5.2 -11.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3299 -5.1 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1898 -5.0 -4.9 ABC-type sugar transport system, permease component compare
Psest_0152 -4.8 -5.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_1474 -4.8 -3.3 phosphoribosylaminoimidazole synthetase compare
Psest_0999 -4.8 -3.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0489 -4.7 -3.3 phosphoserine phosphatase SerB compare
Psest_3810 -4.7 -3.2 orotate phosphoribosyltransferase compare
Psest_1805 -4.6 -4.5 integration host factor, beta subunit compare
Psest_2590 -4.6 -3.2 3-isopropylmalate dehydratase, small subunit compare
Psest_2579 -4.6 -4.5 amidophosphoribosyltransferase compare
Psest_0280 -4.6 -15.2 homoserine O-acetyltransferase compare
Psest_3818 -4.5 -8.6 endoribonuclease L-PSP, putative compare
Psest_2329 -4.5 -20.1 Transcriptional regulator compare
Psest_3159 -4.3 -13.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0062 -4.3 -9.1 tryptophan synthase, alpha subunit compare
Psest_3297 -4.2 -11.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3190 -4.2 -6.4 pyruvate kinase compare
Psest_4088 -4.2 -2.9 Transcriptional regulators compare
Psest_4085 -4.2 -19.2 Biotin carboxylase compare
Psest_0442 -4.1 -12.3 ATPases of the AAA+ class compare
Psest_1947 -4.1 -2.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1452 -4.0 -3.9 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1994 -4.0 -8.0 Amidases related to nicotinamidase compare
Psest_1013 -4.0 -3.9 phosphoribosylamine--glycine ligase compare
Psest_1704 -3.9 -3.8 Dehydrogenases (flavoproteins) compare
Psest_4084 -3.8 -18.7 oxaloacetate decarboxylase alpha subunit compare
Psest_3944 -3.8 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0849 -3.8 -3.7 6-phosphogluconate dehydratase compare
Psest_3123 -3.7 -6.6 dihydroorotase, homodimeric type compare
Psest_0313 -3.7 -4.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4086 -3.7 -13.2 Transcriptional regulator compare
Psest_0850 -3.6 -5.5 glucokinase, proteobacterial type compare
Psest_3960 -3.6 -2.3 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0855 -3.5 -2.4 NAD-dependent aldehyde dehydrogenases compare
Psest_0063 -3.5 -4.2 tryptophan synthase, beta subunit compare
Psest_3178 -3.4 -6.3 formyltetrahydrofolate deformylase compare
Psest_0852 -3.4 -4.0 glucose-6-phosphate 1-dehydrogenase compare
Psest_1686 -3.4 -9.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1899 -3.3 -6.0 ABC-type sugar transport systems, ATPase components compare
Psest_0411 -3.3 -10.2 biotin synthetase compare
Psest_0853 -3.2 -2.2 6-phosphogluconolactonase compare
Psest_3226 -3.1 -1.5 Predicted membrane protein compare
Psest_1974 -3.1 -4.6 integration host factor, alpha subunit compare
Psest_0958 -3.0 -14.2 Oligoketide cyclase/lipid transport protein compare
Psest_2988 -3.0 -12.4 aspartate kinase, monofunctional class compare
Psest_3322 -3.0 -18.5 TIGR02099 family protein compare
Psest_2719 -3.0 -6.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1505 -2.8 -4.9 Organic radical activating enzymes compare
Psest_1242 -2.7 -4.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3862 -2.4 -14.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3943 -2.3 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2975 -2.3 -5.2 tRNA_Arg_CCT compare
Psest_0466 -2.2 -5.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3998 -2.2 -4.6 glutamate--cysteine ligase compare
Psest_2104 -2.1 -4.7 IscR-regulated protein YhgI compare
Psest_0327 -2.1 -3.9 Transcriptional regulator compare
Psest_1000 -2.1 -9.5 PAS domain S-box compare
Psest_1660 -2.0 -4.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_4191 -2.0 -2.7 Transcriptional regulator compare
Psest_3306 -2.0 -6.6 conserved hypothetical integral membrane protein compare
Psest_2944 -2.0 -8.6 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_1082 -2.0 -2.0 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3637 -2.0 -7.0 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_0209 -1.9 -1.2 membrane protein AbrB duplication compare
Psest_2333 -1.9 -2.0 Protein of unknown function (DUF3359). compare
Psest_0292 -1.9 -3.0 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1012 -1.9 -6.9 Signal transduction histidine kinase compare
Psest_0170 -1.8 -6.9 5,10-methenyltetrahydrofolate synthetase compare
Psest_1657 -1.8 -3.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0575 -1.7 -1.6 HrpA-like helicases compare
Psest_0845 -1.7 -1.1 hypothetical protein compare
Psest_3458 -1.7 -1.9 hypothetical protein compare
Psest_2712 -1.6 -6.6 Surface lipoprotein compare
Psest_3664 -1.6 -3.1 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2967 -1.5 -2.2 flagellar basal-body rod protein FlgC compare
Psest_1111 -1.5 -3.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3766 -1.5 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1277 -1.5 -10.2 2-isopropylmalate synthase, yeast type compare
Psest_3092 -1.5 -2.6 ribonuclease III, bacterial compare
Psest_0259 -1.5 -1.9 cell division ATP-binding protein FtsE compare
Psest_0193 -1.4 -1.2 conserved hypothetical protein compare
Psest_2405 -1.4 -2.9 NAD-dependent protein deacetylases, SIR2 family compare
Psest_2775 -1.4 -4.9 Glycerol-3-phosphate dehydrogenase compare
Psest_0208 -1.4 -5.9 Uncharacterized protein conserved in bacteria compare
Psest_1496 -1.4 -2.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_0848 -1.4 -2.9 hypothetical protein compare
Psest_1814 -1.4 -10.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3317 -1.4 -5.8 Phosphotransferase System HPr (HPr) Family compare
Psest_1655 -1.4 -6.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2651 -1.4 -4.5 DNA topoisomerase I, bacterial compare
Psest_1031 -1.4 -7.1 Uncharacterized protein conserved in bacteria compare
Psest_2643 -1.4 -3.7 Beta-glucosidase-related glycosidases compare
Psest_1486 -1.3 -2.6 hypothetical protein compare
Psest_2809 -1.3 -4.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2532 -1.3 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_2504 -1.3 -5.4 flagellar biosynthetic protein FliS compare
Psest_2872 -1.3 -2.8 protein RecA compare
Psest_3626 -1.3 -6.0 hypothetical protein compare
Psest_1103 -1.3 -3.7 GTP-binding protein YchF compare
Psest_1506 -1.3 -5.8 queuosine biosynthesis protein QueC compare
Psest_1144 -1.3 -4.4 AmpG-related permease compare
Psest_0870 -1.3 -6.8 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_2531 -1.2 -9.9 cytochrome c oxidase accessory protein FixG compare
Psest_3351 -1.2 -6.3 peptide chain release factor 3 compare
Psest_2585 -1.2 -2.0 pseudouridylate synthase I compare
Psest_3710 -1.2 -8.9 glutamate synthase small subunit family protein, proteobacterial compare
Psest_2946 -1.2 -4.6 septum site-determining protein MinD compare
Psest_2714 -1.2 -2.0 7-cyano-7-deazaguanine reductase compare
Psest_0413 -1.2 -6.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0243 -1.2 -1.1 hypothetical protein compare
Psest_3008 -1.2 -2.2 cobyric acid synthase CobQ compare
Psest_0277 -1.2 -1.6 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3496 -1.2 -1.6 Predicted metal-binding protein compare
Psest_1659 -1.1 -3.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3307 -1.1 -5.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3790 -1.1 -6.4 Cytochrome c5 compare
Psest_2507 -1.1 -8.6 Flagellin and related hook-associated proteins compare
Psest_2945 -1.1 -2.6 septum site-determining protein MinC compare
Psest_4197 -1.1 -2.3 general secretion pathway protein J compare
Psest_1663 -1.1 -3.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3711 -1.1 -8.6 Glutamate synthase domain 2 compare
Psest_0498 -1.1 -1.7 ribosome small subunit-dependent GTPase A compare
Psest_0306 -1.0 -8.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3303 -1.0 -4.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0359 -1.0 -1.7 Transcriptional regulators compare
Psest_3904 -1.0 -0.9 hypothetical protein compare
Psest_0207 -1.0 -1.7 hypothetical protein compare
Psest_1824 -1.0 -4.0 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1292 -1.0 -5.9 monothiol glutaredoxin, Grx4 family compare
Psest_0558 -1.0 -0.8 urease, beta subunit compare
Psest_3662 -1.0 -2.3 DnaJ-domain-containing proteins 1 compare
Psest_0417 -1.0 -2.4 Acyl-CoA dehydrogenases compare
Psest_3419 -1.0 -6.3 Predicted transcriptional regulators compare
Psest_0281 -1.0 -5.1 Dynamin family. compare
Psest_0722 -1.0 -6.4 Predicted ATPase compare
Psest_1001 -1.0 -1.8 hypothetical protein compare
Psest_2437 -1.0 -2.5 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_0691 -1.0 -7.4 ribonuclease R compare
Psest_1498 -1.0 -3.4 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3893 -1.0 -2.6 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_2527 -0.9 -5.7 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1472 -0.9 -5.6 Protein of unknown function (DUF3108). compare
Psest_1241 -0.9 -5.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3305 -0.9 -5.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2358 -0.9 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2887 -0.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1809 -0.9 -6.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3047 -0.9 -1.4 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_4221 -0.9 -2.7 homoserine kinase, Neisseria type compare
Psest_2083 -0.9 -5.0 Putative sterol carrier protein compare
Psest_4363 -0.9 -5.0 ATPases involved in chromosome partitioning compare
Psest_2324 -0.9 -7.1 hypothetical protein compare
Psest_0415 -0.9 -3.2 dethiobiotin synthase compare
Psest_1661 -0.9 -2.2 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0969 -0.9 -2.3 transcription elongation factor GreA compare
Psest_2325 -0.9 -6.4 alpha-L-glutamate ligase-related protein compare
Psest_3995 -0.9 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1744 -0.9 -5.8 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_1466 -0.9 -2.6 transcriptional regulator, Spx/MgsR family compare
Psest_2308 -0.9 -1.8 Predicted Fe-S protein compare
Psest_0708 -0.9 -2.4 outer membrane assembly lipoprotein YfiO compare
Psest_0108 -0.9 -3.7 malonate decarboxylase, epsilon subunit compare
Psest_1819 -0.9 -7.6 Nucleoside-diphosphate-sugar epimerases compare
Psest_2001 -0.8 -2.5 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0227 -0.8 -1.4 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_0091 -0.8 -2.4 phosphonate C-P lyase system protein PhnL compare
Psest_2323 -0.8 -6.6 Uncharacterized protein conserved in archaea compare
Psest_3304 -0.8 -3.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2088 -0.8 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1249 -0.8 -5.7 serine O-acetyltransferase compare
Psest_2968 -0.8 -3.7 flagellar basal-body rod protein FlgB compare
Psest_3531 -0.8 -1.0 Peptidase propeptide and YPEB domain. compare
Psest_0115 -0.8 -1.1 Predicted integral membrane protein compare
Psest_0103 -0.8 -1.3 triphosphoribosyl-dephospho-CoA synthase MdcB compare


Specific Phenotypes

For 2 genes in this experiment