Experiment set5H41 for Pseudomonas stutzeri RCH2

Compare to:

Glucose defined 30C timecourse1 timepoint 1

200 most important genes:

  gene name fitness t score description  
Psest_2591 -6.6 -4.5 3-isopropylmalate dehydratase, large subunit compare
Psest_0325 -5.8 -20.9 Putative threonine efflux protein compare
Psest_2584 -5.5 -8.4 Phosphoribosylanthranilate isomerase compare
Psest_1895 -5.4 -5.2 Signal transduction histidine kinase compare
Psest_0153 -5.3 -8.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3648 -5.2 -9.4 anthranilate phosphoribosyltransferase compare
Psest_0508 -5.1 -9.2 gamma-glutamyl phosphate reductase compare
Psest_0155 -5.0 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1897 -5.0 -10.1 ABC-type sugar transport systems, permease components compare
Psest_1473 -4.9 -12.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1474 -4.8 -3.3 phosphoribosylaminoimidazole synthetase compare
Psest_2578 -4.8 -16.4 O-succinylhomoserine sulfhydrylase compare
Psest_3299 -4.8 -13.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0152 -4.7 -5.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_3384 -4.7 -10.5 glutamate 5-kinase compare
Psest_3647 -4.7 -10.0 Indole-3-glycerol phosphate synthase compare
Psest_0062 -4.7 -7.8 tryptophan synthase, alpha subunit compare
Psest_3810 -4.7 -3.2 orotate phosphoribosyltransferase compare
Psest_1898 -4.7 -8.9 ABC-type sugar transport system, permease component compare
Psest_0326 -4.7 -16.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2590 -4.7 -3.3 3-isopropylmalate dehydratase, small subunit compare
Psest_0687 -4.6 -12.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3864 -4.6 -15.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3650 -4.6 -14.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0489 -4.5 -4.4 phosphoserine phosphatase SerB compare
Psest_3866 -4.4 -15.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3298 -4.4 -12.5 histidinol dehydrogenase compare
Psest_0999 -4.4 -4.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2589 -4.4 -15.1 3-isopropylmalate dehydrogenase compare
Psest_2579 -4.3 -6.6 amidophosphoribosyltransferase compare
Psest_0279 -4.3 -7.7 methionine biosynthesis protein MetW compare
Psest_0280 -4.3 -16.9 homoserine O-acetyltransferase compare
Psest_1896 -4.2 -5.7 ABC-type sugar transport system, periplasmic component compare
Psest_3159 -4.1 -14.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1947 -3.9 -3.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1772 -3.8 -8.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3944 -3.8 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0313 -3.7 -4.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4088 -3.6 -4.2 Transcriptional regulators compare
Psest_1295 -3.6 -11.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1013 -3.5 -5.3 phosphoribosylamine--glycine ligase compare
Psest_0849 -3.5 -8.3 6-phosphogluconate dehydratase compare
Psest_0852 -3.4 -4.0 glucose-6-phosphate 1-dehydrogenase compare
Psest_1037 -3.4 -3.8 acetolactate synthase, small subunit compare
Psest_1704 -3.3 -4.4 Dehydrogenases (flavoproteins) compare
Psest_3190 -3.3 -7.8 pyruvate kinase compare
Psest_0855 -3.2 -3.1 NAD-dependent aldehyde dehydrogenases compare
Psest_0853 -3.2 -2.2 6-phosphogluconolactonase compare
Psest_3226 -3.1 -1.5 Predicted membrane protein compare
Psest_0063 -3.1 -7.1 tryptophan synthase, beta subunit compare
Psest_1452 -3.0 -10.3 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0850 -3.0 -6.1 glucokinase, proteobacterial type compare
Psest_3123 -3.0 -5.5 dihydroorotase, homodimeric type compare
Psest_3649 -2.9 -12.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1899 -2.8 -5.5 ABC-type sugar transport systems, ATPase components compare
Psest_3943 -2.7 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_4085 -2.7 -15.8 Biotin carboxylase compare
Psest_1686 -2.6 -8.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3818 -2.6 -9.6 endoribonuclease L-PSP, putative compare
Psest_4084 -2.6 -16.0 oxaloacetate decarboxylase alpha subunit compare
Psest_3297 -2.5 -11.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1994 -2.5 -7.1 Amidases related to nicotinamidase compare
Psest_2719 -2.4 -7.2 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0411 -2.4 -9.8 biotin synthetase compare
Psest_4086 -2.3 -12.6 Transcriptional regulator compare
Psest_2329 -2.3 -17.6 Transcriptional regulator compare
Psest_2988 -2.3 -11.8 aspartate kinase, monofunctional class compare
Psest_0327 -2.3 -4.7 Transcriptional regulator compare
Psest_3700 -2.2 -1.0 hypothetical protein compare
Psest_2067 -2.1 -2.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3862 -2.1 -13.4 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3178 -2.0 -4.7 formyltetrahydrofolate deformylase compare
Psest_0958 -1.9 -11.5 Oligoketide cyclase/lipid transport protein compare
Psest_0442 -1.9 -9.1 ATPases of the AAA+ class compare
Psest_4405 -1.7 -2.2 hypothetical protein compare
Psest_2333 -1.7 -2.0 Protein of unknown function (DUF3359). compare
Psest_0417 -1.7 -3.4 Acyl-CoA dehydrogenases compare
Psest_1505 -1.7 -4.1 Organic radical activating enzymes compare
Psest_1805 -1.7 -4.0 integration host factor, beta subunit compare
Psest_1974 -1.6 -6.2 integration host factor, alpha subunit compare
Psest_3998 -1.6 -5.0 glutamate--cysteine ligase compare
Psest_4191 -1.6 -2.7 Transcriptional regulator compare
Psest_2104 -1.5 -4.0 IscR-regulated protein YhgI compare
Psest_1012 -1.5 -5.3 Signal transduction histidine kinase compare
Psest_1111 -1.5 -3.3 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2775 -1.4 -4.7 Glycerol-3-phosphate dehydrogenase compare
Psest_3317 -1.4 -5.4 Phosphotransferase System HPr (HPr) Family compare
Psest_2944 -1.3 -6.0 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2088 -1.3 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_3937 -1.3 -2.0 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1000 -1.3 -6.8 PAS domain S-box compare
Psest_0259 -1.3 -2.7 cell division ATP-binding protein FtsE compare
Psest_0170 -1.3 -5.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_3002 -1.2 -1.7 Putative translation initiation inhibitor, yjgF family compare
Psest_2872 -1.2 -2.8 protein RecA compare
Psest_2712 -1.2 -6.0 Surface lipoprotein compare
Psest_2643 -1.2 -3.2 Beta-glucosidase-related glycosidases compare
Psest_2122 -1.2 -1.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3626 -1.2 -5.6 hypothetical protein compare
Psest_1506 -1.2 -5.8 queuosine biosynthesis protein QueC compare
Psest_0466 -1.1 -3.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1144 -1.1 -4.0 AmpG-related permease compare
Psest_3092 -1.1 -2.2 ribonuclease III, bacterial compare
Psest_0281 -1.1 -6.0 Dynamin family. compare
Psest_0511 -1.1 -1.9 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0708 -1.1 -2.6 outer membrane assembly lipoprotein YfiO compare
Psest_1486 -1.1 -4.3 hypothetical protein compare
Psest_3047 -1.1 -1.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3637 -1.0 -4.5 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_0515 -1.0 -3.6 rare lipoprotein A compare
Psest_2946 -1.0 -4.6 septum site-determining protein MinD compare
Psest_3904 -1.0 -0.9 hypothetical protein compare
Psest_1103 -1.0 -3.4 GTP-binding protein YchF compare
Psest_1814 -1.0 -6.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2809 -1.0 -3.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0691 -1.0 -7.5 ribonuclease R compare
Psest_3322 -1.0 -7.9 TIGR02099 family protein compare
Psest_1824 -0.9 -3.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1242 -0.9 -2.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3664 -0.9 -2.0 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_4098 -0.9 -2.6 Superfamily I DNA and RNA helicases compare
Psest_4197 -0.9 -2.1 general secretion pathway protein J compare
Psest_3306 -0.9 -3.9 conserved hypothetical integral membrane protein compare
Psest_1879 -0.9 -2.7 Trk-type K+ transport systems, membrane components compare
Psest_1277 -0.9 -7.2 2-isopropylmalate synthase, yeast type compare
Psest_2532 -0.9 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_2490 -0.9 -6.4 succinyl-CoA synthetase, alpha subunit compare
Psest_3447 -0.9 -0.7 Uncharacterized MobA-related protein compare
Psest_0277 -0.9 -1.8 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2491 -0.9 -4.6 succinyl-CoA synthetase, beta subunit compare
Psest_2975 -0.9 -3.0 tRNA_Arg_CCT compare
Psest_2945 -0.8 -2.1 septum site-determining protein MinC compare
Psest_3449 -0.8 -0.8 DJ-1 family protein compare
Psest_3458 -0.8 -1.3 hypothetical protein compare
Psest_3662 -0.8 -2.0 DnaJ-domain-containing proteins 1 compare
Psest_1496 -0.8 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_1241 -0.8 -4.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0993 -0.8 -5.1 Glucose-6-phosphate isomerase compare
Psest_0227 -0.8 -1.2 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_2714 -0.8 -2.2 7-cyano-7-deazaguanine reductase compare
Psest_2507 -0.8 -6.1 Flagellin and related hook-associated proteins compare
Psest_3893 -0.8 -2.3 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1765 -0.8 -4.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0243 -0.8 -0.8 hypothetical protein compare
Psest_0212 -0.8 -0.9 exodeoxyribonuclease V, gamma subunit compare
Psest_2083 -0.8 -5.2 Putative sterol carrier protein compare
Psest_4163 -0.7 -1.8 hypothetical protein compare
Psest_0445 -0.7 -6.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0722 -0.7 -5.0 Predicted ATPase compare
Psest_3927 -0.7 -3.0 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_4054 -0.7 -1.6 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_1661 -0.7 -1.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2531 -0.7 -5.9 cytochrome c oxidase accessory protein FixG compare
Psest_0208 -0.7 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_1459 -0.7 -2.4 hypothetical protein compare
Psest_0718 -0.7 -3.0 nicotinate-nucleotide pyrophosphorylase compare
Psest_1819 -0.7 -6.3 Nucleoside-diphosphate-sugar epimerases compare
Psest_2504 -0.7 -3.0 flagellar biosynthetic protein FliS compare
Psest_3435 -0.7 -3.7 hypothetical protein compare
Psest_1249 -0.7 -4.4 serine O-acetyltransferase compare
Psest_1660 -0.7 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1292 -0.7 -4.6 monothiol glutaredoxin, Grx4 family compare
Psest_1663 -0.7 -2.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3044 -0.7 -3.6 deoxycytidine triphosphate deaminase compare
Psest_0857 -0.7 -0.9 Membrane transporters of cations and cationic drugs compare
Psest_2530 -0.7 -4.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1695 -0.7 -2.4 Tfp pilus assembly protein PilZ compare
Psest_0292 -0.7 -1.5 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2651 -0.7 -2.4 DNA topoisomerase I, bacterial compare
Psest_0226 -0.7 -1.8 Domain of unknown function (DUF3482)./GTPase of unknown function. compare
Psest_3180 -0.6 -4.5 Exonuclease I compare
Psest_2845 -0.6 -4.0 [Protein-PII] uridylyltransferase compare
Psest_3351 -0.6 -3.7 peptide chain release factor 3 compare
Psest_2527 -0.6 -4.6 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4051 -0.6 -2.0 molybdenum-pterin binding domain compare
Psest_1282 -0.6 -1.5 Amidases related to nicotinamidase compare
Psest_4363 -0.6 -4.1 ATPases involved in chromosome partitioning compare
Psest_0297 -0.6 -2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0207 -0.6 -1.1 hypothetical protein compare
Psest_2525 -0.6 -3.0 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_3710 -0.6 -5.2 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3174 -0.6 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1182 -0.6 -2.5 Transcriptional regulator compare
Psest_3185 -0.6 -1.4 MoxR-like ATPases compare
Psest_3303 -0.6 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0709 -0.6 -4.7 pseudouridine synthase, RluA family compare
Psest_0632 -0.6 -1.9 hypothetical protein compare
Psest_4221 -0.6 -2.0 homoserine kinase, Neisseria type compare
Psest_3305 -0.6 -3.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1999 -0.6 -1.5 pseudouridine synthase compare
Psest_1809 -0.6 -4.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1736 -0.6 -2.8 Cu/Zn superoxide dismutase compare
Psest_3711 -0.6 -5.0 Glutamate synthase domain 2 compare
Psest_4315 -0.6 -1.2 ABC-type metal ion transport system, permease component compare
Psest_0161 -0.6 -1.4 Membrane-bound metallopeptidase compare
Psest_1498 -0.6 -2.3 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3419 -0.6 -4.3 Predicted transcriptional regulators compare
Psest_0520 -0.6 -0.9 hypothetical protein compare
Psest_0870 -0.6 -3.7 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_1001 -0.6 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in temperature experiments