Experiment set5H41 for Shewanella amazonensis SB2B

Compare to:

Motility assay, center cut sample 2

Group: motility
Media: LB + Agar (3 g/L)
Culturing: SB2B_ML5, Agar plate, Aerobic, at 37 (C), shaken=0 rpm, (Solid)
By: Kelly on 8/28/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 29 genes in this experiment

For motility Agar in Shewanella amazonensis SB2B

For motility Agar across organisms

SEED Subsystems

Subsystem #Specific
Bacterial hemoglobins 3
Bacterial Chemotaxis 2
Bacterial Cytoskeleton 1
Chitin and N-acetylglucosamine utilization 1
Nudix proteins (nucleoside triphosphate hydrolases) 1
Plasmid replication 1
Twin-arginine translocation system 1
Two cell division clusters relating to chromosome partitioning 1
YcfH 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
pyrimidine deoxyribonucleotides dephosphorylation 3 1 1
pyrimidine deoxyribonucleotides de novo biosynthesis II 7 7 1
pyrimidine deoxyribonucleotides de novo biosynthesis I 9 9 1
pyrimidine deoxyribonucleotides de novo biosynthesis III 9 8 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) 14 14 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 18 18 1