Experiment set5H39 for Pseudomonas stutzeri RCH2

Compare to:

Glucose defined media 26C sample1

200 most important genes:

  gene name fitness t score description  
Psest_2590 -6.0 -2.7 3-isopropylmalate dehydratase, small subunit compare
Psest_3647 -4.8 -9.8 Indole-3-glycerol phosphate synthase compare
Psest_1896 -4.8 -6.5 ABC-type sugar transport system, periplasmic component compare
Psest_0153 -4.7 -11.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0279 -4.6 -7.7 methionine biosynthesis protein MetW compare
Psest_0155 -4.5 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3159 -4.5 -12.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1704 -4.5 -3.1 Dehydrogenases (flavoproteins) compare
Psest_3650 -4.5 -14.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3298 -4.5 -11.5 histidinol dehydrogenase compare
Psest_3384 -4.4 -11.7 glutamate 5-kinase compare
Psest_2584 -4.4 -9.4 Phosphoribosylanthranilate isomerase compare
Psest_0325 -4.4 -17.3 Putative threonine efflux protein compare
Psest_0687 -4.2 -12.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0326 -4.2 -16.1 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0999 -4.1 -4.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1474 -4.1 -8.3 phosphoribosylaminoimidazole synthetase compare
Psest_1897 -4.1 -14.0 ABC-type sugar transport systems, permease components compare
Psest_3299 -4.1 -15.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3866 -4.1 -17.9 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3648 -4.1 -10.4 anthranilate phosphoribosyltransferase compare
Psest_1473 -4.1 -12.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3810 -4.0 -3.9 orotate phosphoribosyltransferase compare
Psest_1895 -4.0 -8.4 Signal transduction histidine kinase compare
Psest_1947 -4.0 -3.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0152 -3.9 -5.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_0062 -3.9 -10.0 tryptophan synthase, alpha subunit compare
Psest_2591 -3.8 -6.4 3-isopropylmalate dehydratase, large subunit compare
Psest_1898 -3.8 -12.7 ABC-type sugar transport system, permease component compare
Psest_0508 -3.8 -10.5 gamma-glutamyl phosphate reductase compare
Psest_2578 -3.7 -17.2 O-succinylhomoserine sulfhydrylase compare
Psest_1772 -3.7 -8.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3864 -3.7 -15.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1037 -3.7 -3.9 acetolactate synthase, small subunit compare
Psest_2579 -3.5 -8.9 amidophosphoribosyltransferase compare
Psest_2589 -3.4 -14.3 3-isopropylmalate dehydrogenase compare
Psest_0280 -3.4 -14.2 homoserine O-acetyltransferase compare
Psest_1013 -3.4 -5.9 phosphoribosylamine--glycine ligase compare
Psest_3190 -3.3 -8.2 pyruvate kinase compare
Psest_0852 -3.3 -5.0 glucose-6-phosphate 1-dehydrogenase compare
Psest_3649 -3.2 -12.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3944 -3.2 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0489 -3.2 -5.7 phosphoserine phosphatase SerB compare
Psest_0063 -3.2 -6.4 tryptophan synthase, beta subunit compare
Psest_0853 -3.2 -2.2 6-phosphogluconolactonase compare
Psest_1814 -3.1 -23.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0849 -3.0 -8.7 6-phosphogluconate dehydratase compare
Psest_0850 -2.9 -6.7 glucokinase, proteobacterial type compare
Psest_0313 -2.9 -6.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1805 -2.9 -4.0 integration host factor, beta subunit compare
Psest_1452 -2.8 -10.0 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0855 -2.8 -3.2 NAD-dependent aldehyde dehydrogenases compare
Psest_1012 -2.8 -8.1 Signal transduction histidine kinase compare
Psest_1295 -2.7 -11.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4088 -2.7 -4.4 Transcriptional regulators compare
Psest_1994 -2.7 -7.3 Amidases related to nicotinamidase compare
Psest_3862 -2.7 -14.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2775 -2.7 -6.5 Glycerol-3-phosphate dehydrogenase compare
Psest_2719 -2.6 -8.6 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3123 -2.6 -5.5 dihydroorotase, homodimeric type compare
Psest_0411 -2.6 -10.5 biotin synthetase compare
Psest_2988 -2.4 -8.7 aspartate kinase, monofunctional class compare
Psest_0327 -2.4 -7.4 Transcriptional regulator compare
Psest_1899 -2.4 -5.1 ABC-type sugar transport systems, ATPase components compare
Psest_0466 -2.3 -6.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4084 -2.2 -14.8 oxaloacetate decarboxylase alpha subunit compare
Psest_3960 -2.2 -3.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_4085 -2.2 -13.4 Biotin carboxylase compare
Psest_3818 -2.2 -9.1 endoribonuclease L-PSP, putative compare
Psest_2872 -2.2 -3.9 protein RecA compare
Psest_0958 -2.1 -10.0 Oligoketide cyclase/lipid transport protein compare
Psest_2944 -2.1 -8.0 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2104 -2.1 -4.9 IscR-regulated protein YhgI compare
Psest_3297 -2.1 -10.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4086 -2.1 -10.4 Transcriptional regulator compare
Psest_0417 -2.0 -3.5 Acyl-CoA dehydrogenases compare
Psest_3664 -2.0 -3.1 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3943 -1.7 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0385 -1.7 -2.0 Conserved secreted protein compare
Psest_0115 -1.7 -1.6 Predicted integral membrane protein compare
Psest_1974 -1.7 -5.5 integration host factor, alpha subunit compare
Psest_4191 -1.7 -3.0 Transcriptional regulator compare
Psest_1249 -1.7 -9.9 serine O-acetyltransferase compare
Psest_0170 -1.7 -6.8 5,10-methenyltetrahydrofolate synthetase compare
Psest_0442 -1.6 -9.9 ATPases of the AAA+ class compare
Psest_3296 -1.6 -7.8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3662 -1.6 -2.7 DnaJ-domain-containing proteins 1 compare
Psest_0243 -1.6 -1.2 hypothetical protein compare
Psest_3100 -1.5 -10.0 RNA polymerase sigma factor RpoE compare
Psest_2329 -1.5 -11.9 Transcriptional regulator compare
Psest_3317 -1.5 -4.4 Phosphotransferase System HPr (HPr) Family compare
Psest_1999 -1.5 -3.0 pseudouridine synthase compare
Psest_2975 -1.5 -5.0 tRNA_Arg_CCT compare
Psest_1000 -1.5 -8.0 PAS domain S-box compare
Psest_2088 -1.4 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1725 -1.4 -11.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4163 -1.4 -3.0 hypothetical protein compare
Psest_1486 -1.4 -5.0 hypothetical protein compare
Psest_4044 -1.3 -7.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0413 -1.3 -5.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2358 -1.3 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0511 -1.3 -2.2 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0412 -1.3 -7.5 8-amino-7-oxononanoate synthase compare
Psest_4307 -1.2 -2.0 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_2585 -1.2 -1.4 pseudouridylate synthase I compare
Psest_2491 -1.2 -6.1 succinyl-CoA synthetase, beta subunit compare
Psest_0575 -1.2 -1.2 HrpA-like helicases compare
Psest_1657 -1.2 -3.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2083 -1.2 -5.4 Putative sterol carrier protein compare
Psest_2532 -1.2 -5.0 Uncharacterized protein conserved in bacteria compare
Psest_1505 -1.2 -3.1 Organic radical activating enzymes compare
Psest_3803 -1.2 -2.1 DNA repair protein radc compare
Psest_3998 -1.2 -4.0 glutamate--cysteine ligase compare
Psest_0538 -1.2 -11.2 Signal transduction histidine kinase compare
Psest_1574 -1.2 -2.2 phenazine biosynthesis protein PhzF family compare
Psest_0414 -1.2 -4.5 biotin biosynthesis protein BioC compare
Psest_3963 -1.1 -8.1 PAS domain S-box compare
Psest_3626 -1.1 -6.4 hypothetical protein compare
Psest_3777 -1.1 -2.6 diguanylate cyclase (GGDEF) domain compare
Psest_2527 -1.1 -6.3 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3637 -1.1 -4.7 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_2651 -1.1 -3.8 DNA topoisomerase I, bacterial compare
Psest_3322 -1.1 -8.9 TIGR02099 family protein compare
Psest_2490 -1.1 -7.3 succinyl-CoA synthetase, alpha subunit compare
Psest_0281 -1.1 -6.7 Dynamin family. compare
Psest_0119 -1.0 -1.4 hypothetical protein compare
Psest_0306 -1.0 -8.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3031 -1.0 -1.3 hypothetical protein compare
Psest_0105 -1.0 -3.2 malonate decarboxylase, beta subunit compare
Psest_2714 -1.0 -2.2 7-cyano-7-deazaguanine reductase compare
Psest_0028 -1.0 -3.3 Coproporphyrinogen III oxidase compare
Psest_1744 -1.0 -6.3 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_3178 -1.0 -2.8 formyltetrahydrofolate deformylase compare
Psest_1518 -1.0 -1.9 tRNA_Ser_CGA compare
Psest_0192 -1.0 -6.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0415 -1.0 -3.7 dethiobiotin synthase compare
Psest_2530 -1.0 -5.1 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_4082 -1.0 -3.2 hypothetical protein compare
Psest_0722 -1.0 -6.1 Predicted ATPase compare
Psest_4316 -1.0 -2.4 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_2405 -1.0 -1.9 NAD-dependent protein deacetylases, SIR2 family compare
Psest_1924 -0.9 -7.8 adhesin-associated MmpL efflux pump (from data) compare
Psest_0259 -0.9 -2.0 cell division ATP-binding protein FtsE compare
Psest_0083 -0.9 -1.7 Uncharacterized conserved protein compare
Psest_3092 -0.9 -1.9 ribonuclease III, bacterial compare
Psest_1122 -0.9 -8.2 putative adhesin (DUF1302) (from data) compare
Psest_3235 -0.9 -7.9 Protein of unknown function (DUF1329). compare
Psest_1065 -0.9 -2.0 hypothetical protein compare
Psest_4287 -0.9 -5.2 Predicted glutamine amidotransferases compare
Psest_1230 -0.9 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_0402 -0.9 -1.3 glycosyltransferase, MGT family compare
Psest_0161 -0.9 -2.0 Membrane-bound metallopeptidase compare
Psest_1663 -0.9 -2.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0212 -0.9 -0.8 exodeoxyribonuclease V, gamma subunit compare
Psest_1242 -0.9 -2.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0691 -0.9 -7.2 ribonuclease R compare
Psest_2643 -0.9 -2.7 Beta-glucosidase-related glycosidases compare
Psest_0692 -0.9 -2.4 rRNA methylase, putative, group 3 compare
Psest_2809 -0.9 -3.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3767 -0.9 -2.2 tyrosine recombinase XerC compare
Psest_3351 -0.9 -4.9 peptide chain release factor 3 compare
Psest_3766 -0.9 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1813 -0.9 -5.1 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0154 -0.9 -3.0 Uncharacterized conserved protein compare
Psest_1677 -0.9 -1.8 Protein-tyrosine-phosphatase compare
Psest_3047 -0.9 -1.6 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_4054 -0.9 -1.7 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_1686 -0.9 -3.5 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3700 -0.9 -0.5 hypothetical protein compare
Psest_4342 -0.9 -3.3 Putative GTPases (G3E family) compare
Psest_4335 -0.9 -1.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0310 -0.9 -2.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1582 -0.8 -1.9 Protein of unknown function (DUF3087). compare
Psest_0208 -0.8 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_3790 -0.8 -5.1 Cytochrome c5 compare
Psest_0696 -0.8 -5.6 hypothetical protein compare
Psest_3698 -0.8 -1.9 Predicted exporter compare
Psest_0678 -0.8 -1.6 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_0175 -0.8 -4.3 Xaa-Pro aminopeptidase compare
Psest_2507 -0.8 -6.4 Flagellin and related hook-associated proteins compare
Psest_1661 -0.8 -2.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3459 -0.8 -1.3 hypothetical protein compare
Psest_0292 -0.8 -1.9 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3565 -0.8 -1.0 hypothetical protein compare
Psest_0697 -0.8 -3.6 ribosomal protein L9 compare
Psest_3958 -0.8 -3.0 Predicted Fe-S-cluster oxidoreductase compare
Psest_0959 -0.8 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_0650 -0.8 -2.7 RNA polymerase sigma factor, sigma-70 family compare
Psest_2613 -0.8 -1.4 hypothetical protein compare
Psest_0487 -0.8 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_0969 -0.8 -2.1 transcription elongation factor GreA compare
Psest_0520 -0.8 -1.1 hypothetical protein compare
Psest_1804 -0.8 -2.6 Superfamily II DNA and RNA helicases compare
Psest_0368 -0.8 -0.7 Transcriptional regulator compare
Psest_3013 -0.8 -0.9 cobyrinic acid a,c-diamide synthase compare
Psest_1241 -0.8 -4.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_1819 -0.8 -6.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_1149 -0.8 -2.2 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_1323 -0.7 -2.8 Hydroxypyruvate isomerase compare
Psest_1111 -0.7 -1.6 Flp pilus assembly protein TadD, contains TPR repeats compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in temperature experiments