Experiment set5H33 for Pseudomonas stutzeri RCH2

Compare to:

LB 30C timecourse2 timepoint 2

200 most important genes:

  gene name fitness t score description  
Psest_0442 -4.8 -8.7 ATPases of the AAA+ class compare
Psest_1492 -4.2 -2.9 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_4103 -3.2 -1.8 AraC-type DNA-binding domain-containing proteins compare
Psest_2944 -3.1 -5.8 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2945 -3.1 -3.1 septum site-determining protein MinC compare
Psest_3766 -3.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3399 -3.0 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2067 -3.0 -1.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_4078 -2.9 -2.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1082 -2.9 -1.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1947 -2.9 -2.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1421 -2.9 -3.3 Glutathione S-transferase compare
Psest_2719 -2.8 -5.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2285 -2.7 -6.4 ATP-dependent protease La compare
Psest_1474 -2.6 -7.7 phosphoribosylaminoimidazole synthetase compare
Psest_2872 -2.5 -3.3 protein RecA compare
Psest_2651 -2.5 -3.8 DNA topoisomerase I, bacterial compare
Psest_1498 -2.5 -3.5 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3129 -2.5 -2.2 tyrosine recombinase XerD compare
Psest_4219 -2.5 -1.7 DNA polymerase I compare
Psest_0845 -2.5 -0.8 hypothetical protein compare
Psest_2855 -2.4 -2.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3123 -2.4 -5.0 dihydroorotase, homodimeric type compare
Psest_3159 -2.4 -7.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0846 -2.4 -1.6 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3816 -2.4 -1.1 DNA-directed RNA polymerase, omega subunit compare
Psest_1907 -2.3 -1.0 hypothetical protein compare
Psest_1496 -2.2 -2.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_3476 -2.1 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3080 -2.1 -1.8 AraC-type DNA-binding domain-containing proteins compare
Psest_1888 -2.1 -1.2 Sua5/YciO/YrdC/YwlC family protein compare
Psest_1505 -2.0 -2.7 Organic radical activating enzymes compare
Psest_0857 -2.0 -0.9 Membrane transporters of cations and cationic drugs compare
Psest_4201 -2.0 -1.8 general secretion pathway protein F compare
Psest_4051 -2.0 -3.4 molybdenum-pterin binding domain compare
Psest_1259 -1.9 -5.5 23S rRNA m2A2503 methyltransferase compare
Psest_3456 -1.9 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_3361 -1.9 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_4044 -1.8 -7.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1295 -1.8 -7.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3810 -1.8 -2.5 orotate phosphoribosyltransferase compare
Psest_2946 -1.8 -2.7 septum site-determining protein MinD compare
Psest_1183 -1.8 -1.7 hydroxyisourate hydrolase compare
Psest_4310 -1.8 -2.0 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3700 -1.7 -0.5 hypothetical protein compare
Psest_1595 -1.7 -1.2 Copper chaperone compare
Psest_0708 -1.7 -1.6 outer membrane assembly lipoprotein YfiO compare
Psest_1459 -1.7 -4.2 hypothetical protein compare
Psest_0060 -1.7 -1.9 Predicted Fe-S protein compare
Psest_3850 -1.7 -0.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0359 -1.6 -2.2 Transcriptional regulators compare
Psest_0837 -1.6 -2.5 Putative lipid carrier protein compare
Psest_1655 -1.6 -5.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1013 -1.6 -3.6 phosphoribosylamine--glycine ligase compare
Psest_0489 -1.6 -3.6 phosphoserine phosphatase SerB compare
Psest_1354 -1.6 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2775 -1.6 -4.2 Glycerol-3-phosphate dehydrogenase compare
Psest_2579 -1.6 -6.0 amidophosphoribosyltransferase compare
Psest_3092 -1.5 -2.0 ribonuclease III, bacterial compare
Psest_0385 -1.5 -1.3 Conserved secreted protein compare
Psest_2218 -1.5 -1.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_0843 -1.5 -5.4 hypothetical protein compare
Psest_3960 -1.5 -1.3 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0759 -1.5 -1.2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_1704 -1.5 -2.5 Dehydrogenases (flavoproteins) compare
Psest_3988 -1.5 -4.0 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0744 -1.5 -0.6 Uncharacterized conserved protein compare
Psest_0999 -1.4 -3.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1282 -1.4 -1.7 Amidases related to nicotinamidase compare
Psest_1473 -1.4 -4.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3247 -1.4 -1.6 Uncharacterized membrane protein compare
Psest_1506 -1.4 -3.3 queuosine biosynthesis protein QueC compare
Psest_1659 -1.3 -3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1167 -1.3 -1.0 hypothetical protein compare
Psest_0537 -1.3 -1.5 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3367 -1.3 -1.3 translation initation factor SUI1, putative, prokaryotic compare
Psest_1814 -1.3 -9.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0237 -1.3 -2.2 intracellular protease, PfpI family compare
Psest_3005 -1.3 -1.4 Fructose-2,6-bisphosphatase compare
Psest_1001 -1.3 -2.5 hypothetical protein compare
Psest_1053 -1.3 -1.2 hypothetical protein compare
Psest_1516 -1.3 -2.5 Uncharacterized lipoprotein compare
Psest_4363 -1.3 -5.3 ATPases involved in chromosome partitioning compare
Psest_1029 -1.3 -1.9 Regulator of competence-specific genes compare
Psest_1863 -1.2 -3.1 hypothetical protein compare
Psest_2714 -1.2 -1.6 7-cyano-7-deazaguanine reductase compare
Psest_3343 -1.2 -2.5 Predicted periplasmic protein compare
Psest_2025 -1.2 -1.2 cold shock domain protein CspD compare
Psest_0991 -1.2 -3.8 Predicted SAM-dependent methyltransferases compare
Psest_1079 -1.2 -1.1 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_2718 -1.2 -1.1 hypothetical protein compare
Psest_1078 -1.2 -2.3 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_1230 -1.2 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0520 -1.2 -0.9 hypothetical protein compare
Psest_2565 -1.2 -1.3 Transcriptional regulator compare
Psest_3002 -1.2 -0.8 Putative translation initiation inhibitor, yjgF family compare
Psest_0030 -1.1 -1.4 Putative NADH-flavin reductase compare
Psest_3894 -1.1 -2.7 Carbon starvation protein, predicted membrane protein compare
Psest_3230 -1.1 -3.7 Uncharacterized conserved protein compare
Psest_1518 -1.1 -2.3 tRNA_Ser_CGA compare
Psest_4170 -1.1 -1.1 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2648 -1.1 -2.1 hypothetical protein compare
Psest_2018 -1.1 -3.1 Uncharacterized conserved protein compare
Psest_4191 -1.1 -1.6 Transcriptional regulator compare
Psest_0294 -1.1 -2.9 Putative transcriptional regulator compare
Psest_0725 -1.1 -2.3 Negative regulator of beta-lactamase expression compare
Psest_2130 -1.1 -2.1 exodeoxyribonuclease III compare
Psest_0186 -1.1 -2.8 Protein-disulfide isomerase compare
Psest_0378 -1.1 -0.7 Lactate dehydrogenase and related dehydrogenases compare
Psest_1599 -1.1 -2.2 heavy metal sensor kinase compare
Psest_3522 -1.1 -2.0 3-hydroxybutyrate dehydrogenase compare
Psest_0225 -1.1 -1.4 Predicted permease, DMT superfamily compare
Psest_0506 -1.1 -2.5 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_1144 -1.1 -3.1 AmpG-related permease compare
Psest_1602 -1.1 -0.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3626 -1.1 -3.5 hypothetical protein compare
Psest_4042 -1.1 -2.6 hypothetical protein compare
Psest_3637 -1.1 -3.1 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_0417 -1.1 -2.2 Acyl-CoA dehydrogenases compare
Psest_1058 -1.1 -1.7 ribosomal-protein-alanine acetyltransferase compare
Psest_1860 -1.0 -1.8 Uncharacterized conserved protein compare
Psest_2580 -1.0 -3.2 Uncharacterized membrane protein, required for colicin V production compare
Psest_0083 -1.0 -1.5 Uncharacterized conserved protein compare
Psest_1466 -1.0 -2.4 transcriptional regulator, Spx/MgsR family compare
Psest_0093 -1.0 -1.3 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3190 -1.0 -4.2 pyruvate kinase compare
Psest_2391 -1.0 -3.0 PAS domain S-box compare
Psest_2101 -1.0 -1.4 hypothetical protein compare
Psest_1510 -1.0 -2.7 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4267 -1.0 -1.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4098 -1.0 -2.2 Superfamily I DNA and RNA helicases compare
Psest_0691 -1.0 -5.8 ribonuclease R compare
Psest_2243 -1.0 -1.0 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1008 -1.0 -1.0 hypothetical protein compare
Psest_3543 -1.0 -1.5 hypothetical protein compare
Psest_1813 -1.0 -5.7 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1242 -1.0 -2.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2119 -1.0 -1.4 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1999 -1.0 -1.2 pseudouridine synthase compare
Psest_3767 -1.0 -1.7 tyrosine recombinase XerC compare
Psest_0988 -1.0 -1.7 Protein of unknown function (DUF2845). compare
Psest_2217 -1.0 -1.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes compare
Psest_3478 -1.0 -0.7 Cytochrome B561 compare
Psest_0413 -1.0 -3.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1200 -1.0 -3.2 putative urate catabolism protein compare
Psest_3860 -0.9 -1.5 Predicted permeases compare
Psest_3459 -0.9 -0.9 hypothetical protein compare
Psest_2525 -0.9 -2.8 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_4366 -0.9 -3.0 Multisubunit Na+/H+ antiporter, MnhG subunit compare
Psest_3834 -0.9 -2.2 NAD(P)H-nitrite reductase compare
Psest_1910 -0.9 -1.9 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_1657 -0.9 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0955 -0.9 -3.8 D,L-lactate:H+ symporter (from data) compare
Psest_2766 -0.9 -0.6 hypothetical protein compare
Psest_1873 -0.9 -2.3 Predicted permease, DMT superfamily compare
Psest_3128 -0.9 -3.3 Protein-disulfide isomerase compare
Psest_1920 -0.9 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_4242 -0.9 -2.6 type VI secretion system FHA domain protein compare
Psest_1249 -0.9 -5.0 serine O-acetyltransferase compare
Psest_1631 -0.9 -0.7 Uncharacterized conserved small protein compare
Psest_1081 -0.9 -2.3 hypothetical protein compare
Psest_0257 -0.9 -2.5 Predicted Zn-dependent peptidases compare
Psest_0516 -0.9 -4.4 D-alanyl-D-alanine carboxypeptidase compare
Psest_0998 -0.9 -1.5 poly(A) polymerase compare
Psest_4095 -0.9 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3355 -0.9 -1.7 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Psest_1822 -0.9 -3.9 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1486 -0.9 -1.8 hypothetical protein compare
Psest_2955 -0.9 -2.3 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_0498 -0.9 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_0259 -0.9 -1.1 cell division ATP-binding protein FtsE compare
Psest_3146 -0.9 -1.2 hypothetical protein compare
Psest_0334 -0.9 -2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2682 -0.9 -2.3 fumarate hydratase, class II compare
Psest_0508 -0.9 -3.0 gamma-glutamyl phosphate reductase compare
Psest_0390 -0.9 -1.5 Short-chain dehydrogenases of various substrate specificities compare
Psest_3173 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0164 -0.8 -0.5 Glutaredoxin, GrxC family compare
Psest_0066 -0.8 -0.9 Protein of unknown function (DUF3060). compare
Psest_1938 -0.8 -2.6 hypothetical protein compare
Psest_1874 -0.8 -2.2 AraC-type DNA-binding domain-containing proteins compare
Psest_0609 -0.8 -1.1 hypothetical protein compare
Psest_3237 -0.8 -1.2 hypothetical protein compare
Psest_0869 -0.8 -1.2 Acetyltransferase (isoleucine patch superfamily) compare
Psest_2748 -0.8 -1.0 Transcriptional regulator compare
Psest_0152 -0.8 -2.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_1195 -0.8 -1.8 xanthine permease compare
Psest_2001 -0.8 -1.3 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1323 -0.8 -2.9 Hydroxypyruvate isomerase compare
Psest_4342 -0.8 -2.9 Putative GTPases (G3E family) compare
Psest_4099 -0.8 -5.2 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component compare
Psest_2981 -0.8 -1.5 sodium pump decarboxylases, gamma subunit compare
Psest_0209 -0.8 -0.5 membrane protein AbrB duplication compare
Psest_0212 -0.8 -0.5 exodeoxyribonuclease V, gamma subunit compare
Psest_3537 -0.8 -2.8 hypothetical protein compare
Psest_0632 -0.8 -1.4 hypothetical protein compare
Psest_4270 -0.8 -2.3 TRAP transporter, DctM subunit compare
Psest_3384 -0.8 -3.7 glutamate 5-kinase compare
Psest_2646 -0.8 -2.0 SOS regulatory protein LexA compare
Psest_1922 -0.8 -3.3 aminopeptidase N, Escherichia coli type compare


Specific Phenotypes

For 1 genes in this experiment