Experiment set5H33 for Shewanella amazonensis SB2B

Compare to:

Minimal media, 25C

200 most detrimental genes:

  gene name fitness t score description  
Sama_2314 flgF +2.5 17.1 flagellar basal body rod protein FlgF (RefSeq) compare
Sama_2280 fliA +2.4 13.7 flagellar biosynthesis sigma factor (RefSeq) compare
Sama_2313 flgG +2.3 16.6 flagellar basal body rod protein FlgG (RefSeq) compare
Sama_2293 +2.2 15.2 flagellar protein FliJ (RefSeq) compare
Sama_2294 fliI +2.2 17.7 flagellum-specific ATP synthase (RefSeq) compare
Sama_2432 motB +2.2 15.9 flagellar motor protein MotB (RefSeq) compare
Sama_2295 fliH +2.2 10.8 flagellar assembly protein H (RefSeq) compare
Sama_2321 flgA +2.1 18.1 flagellar basal body P-ring biosynthesis protein FlgA (RefSeq) compare
Sama_2092 +2.1 17.4 OmpA/MotB (RefSeq) compare
Sama_2311 flgI +2.1 16.8 flagellar basal body P-ring protein (RefSeq) compare
Sama_2317 flgC +2.0 11.1 flagellar basal body rod protein FlgC (RefSeq) compare
Sama_3068 +2.0 17.3 sodium-type flagellar protein MotX (RefSeq) compare
Sama_2298 +2.0 9.0 flagellar hook-basal body complex protein (FliE) (RefSeq) compare
Sama_2312 flgH +2.0 12.4 flagellar basal body L-ring protein (RefSeq) compare
Sama_2283 flhA +1.9 16.2 flagellar biosynthesis protein FlhA (RefSeq) compare
Sama_2315 flgE +1.8 16.0 flagellar hook protein FlgE (RefSeq) compare
Sama_2318 flgB +1.8 8.1 flagellar basal body rod protein FlgB (RefSeq) compare
Sama_2284 flhB +1.8 9.8 flagellar biosynthesis protein FlhB (RefSeq) compare
Sama_2433 +1.7 12.2 flagellar motor protein PomA (RefSeq) compare
Sama_2285 fliR +1.7 11.2 flagellar biosynthesis protein FliR (RefSeq) compare
Sama_2289 fliN +1.7 10.6 flagellar motor switch protein (RefSeq) compare
Sama_2287 fliP +1.7 12.8 flagellar biosynthesis protein FliP (RefSeq) compare
Sama_2326 +1.7 13.1 hypothetical protein (RefSeq) compare
Sama_2292 +1.6 12.9 flagellar hook-length control protein FliK (RefSeq) compare
Sama_2286 +1.6 9.7 flagellar biosynthetic protein FliQ (RefSeq) compare
Sama_2288 +1.6 11.5 flagellar protein FliO (RefSeq) compare
Sama_2316 flgD +1.5 11.2 flagellar basal body rod modification protein (RefSeq) compare
Sama_2297 fliF +1.4 10.2 flagellar MS-ring protein (RefSeq) compare
Sama_2301 +1.4 9.5 response regulator receiver protein (RefSeq) compare
Sama_3018 sspA +1.3 8.3 stringent starvation protein A (RefSeq) compare
Sama_2296 fliG +1.1 6.0 flagellar motor switch protein G (RefSeq) compare
Sama_3245 +1.0 7.4 urease accessory protein UreJ (RefSeq) compare
Sama_0118 +0.9 6.2 hypothetical protein (RefSeq) compare
Sama_2310 flgJ +0.9 3.8 flagellar rod assembly protein/muramidase FlgJ (RefSeq) compare
Sama_1879 +0.9 6.1 hypothetical protein (RefSeq) compare
Sama_2306 +0.9 5.8 flagellin-like protein (RefSeq) compare
Sama_1331 +0.9 6.1 hypothetical protein (RefSeq) compare
Sama_1247 +0.9 4.9 primosomal replication protein N'', putative (RefSeq) compare
Sama_0166 hslO +0.8 6.9 Hsp33-like chaperonin (RefSeq) compare
Sama_0586 +0.8 5.9 LysR family transcriptional regulator (RefSeq) compare
Sama_2406 +0.8 7.2 ATP-dependent protease, putative (RefSeq) compare
Sama_3170 metL +0.8 7.3 bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq) compare
Sama_2302 fliS +0.7 4.3 flagellar protein FliS (RefSeq) compare
Sama_2328 +0.7 6.2 UDP-N-acetylglucosamine 4,6-dehydratase (RefSeq) compare
Sama_1777 +0.7 2.7 hypothetical protein (RefSeq) compare
Sama_2291 fliL +0.7 3.8 flagellar basal body-associated protein FliL (RefSeq) compare
Sama_2746 +0.7 6.3 sensory box protein, putative (RefSeq) compare
Sama_3225 +0.7 4.6 tRNA-dihydrouridine synthase B (RefSeq) compare
Sama_3259 +0.7 6.6 toxin secretion ATP-binding protein (RefSeq) compare
Sama_1804 +0.7 3.0 hypothetical protein (RefSeq) compare
Sama_1031 +0.7 6.0 hybrid sensory histidine kinase BarA (RefSeq) compare
Sama_3261 +0.6 5.9 type I secretion outer membrane protein, TolC (RefSeq) compare
Sama_3258 +0.6 6.3 putative outer membrane adhesin like protein (RefSeq) compare
Sama_2335 +0.6 5.3 putative sugar-phosphate nucleotide transferase (RefSeq) compare
Sama_1868 +0.6 3.4 hypothetical protein (RefSeq) compare
Sama_2336 +0.6 4.9 N-acylneuraminate cytidylyltransferase (RefSeq) compare
Sama_3624 +0.6 6.0 protease, putative (RefSeq) compare
Sama_2220 +0.6 4.8 transcriptional regulatory protein TyrR (RefSeq) compare
Sama_1929 +0.6 2.6 hypothetical protein (RefSeq) compare
Sama_1329 +0.6 4.6 hypothetical protein (RefSeq) compare
Sama_1539 +0.6 3.7 putative metal dependent phosphohydrolase (RefSeq) compare
Sama_3260 +0.6 5.2 HlyD family secretion protein (RefSeq) compare
Sama_2290 fliM +0.6 2.4 flagellar motor switch protein FliM (RefSeq) compare
Sama_0684 +0.6 4.9 aminopeptidase P, putative (RefSeq) compare
Sama_2079 +0.6 4.8 acetyl-CoA synthetase (RefSeq) compare
Sama_1771 +0.5 2.5 leucine-responsive transcriptional regulator (RefSeq) compare
Sama_1153 rnhB +0.5 2.3 ribonuclease HII (RefSeq) compare
Sama_1217 +0.5 3.5 hypothetical protein (RefSeq) compare
Sama_3527 +0.5 3.1 molybdenum cofactor biosynthesis protein D (RefSeq) compare
Sama_0818 +0.5 2.3 hypothetical protein (RefSeq) compare
Sama_2208 +0.5 1.9 hypothetical protein (RefSeq) compare
Sama_2044 +0.5 2.2 hypothetical protein (RefSeq) compare
Sama_2235 +0.5 3.8 NAD dependent epimerase/dehydratase family protein (RefSeq) compare
Sama_0450 +0.5 4.1 biogenesis protein MshI (RefSeq) compare
Sama_2266 +0.5 3.9 amino acid/peptide transporter (RefSeq) compare
Sama_3164 +0.5 1.7 hypothetical protein (RefSeq) compare
Sama_1231 +0.5 1.9 peptide ABC transporter, ATP-binding protein (RefSeq) compare
Sama_2844 +0.5 2.1 hypothetical protein (RefSeq) compare
Sama_2282 flhF +0.5 3.4 flagellar biosynthesis regulator FlhF (RefSeq) compare
Sama_2216 +0.5 1.9 hypothetical protein (RefSeq) compare
Sama_0454 +0.5 4.2 MSHA biogenesis protein MshL (RefSeq) compare
Sama_2334 +0.5 2.7 acetyltransferase (RefSeq) compare
Sama_1383 +0.5 4.0 prolyl oligopeptidase family protein (RefSeq) compare
Sama_1637 +0.4 1.9 acetyltransferase (RefSeq) compare
Sama_0451 +0.4 3.0 hypothetical protein (RefSeq) compare
Sama_1350 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_1607 +0.4 2.8 response regulator (RefSeq) compare
Sama_2324 +0.4 2.8 hypothetical protein (RefSeq) compare
Sama_1871 +0.4 3.4 sodium/hydrogen exchanger family protein (RefSeq) compare
Sama_1726 +0.4 1.1 iron-sulfur cluster-binding protein (RefSeq) compare
Sama_3200 +0.4 3.3 ribonuclease activity regulator protein RraA (RefSeq) compare
Sama_0457 +0.4 3.7 MSHA biogenesis protein MshE (RefSeq) compare
Sama_2151 +0.4 3.3 hypothetical protein (RefSeq) compare
Sama_1997 +0.4 2.6 LysR family transcriptional regulator (RefSeq) compare
Sama_1387 +0.4 1.5 hypothetical protein (RefSeq) compare
Sama_0465 +0.4 1.9 MSHA biogenesis protein MshP (RefSeq) compare
Sama_0466 +0.4 3.7 MSHA biogenesis protein MshQ (RefSeq) compare
Sama_2166 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_3144 +0.4 1.7 hypothetical protein (RefSeq) compare
Sama_1770 +0.4 2.8 alanine dehydrogenase (RefSeq) compare
Sama_2793 +0.4 2.3 hypothetical protein (RefSeq) compare
Sama_3162 +0.4 2.6 response regulator receiver protein (RefSeq) compare
Sama_1228 +0.4 1.2 peptidyl-prolyl cis-trans isomerase D (RefSeq) compare
Sama_2629 +0.4 2.7 putative signal transduction protein (RefSeq) compare
Sama_1698 +0.4 3.0 hypothetical protein (RefSeq) compare
Sama_0833 +0.4 0.6 major outer membrane lipoprotein, putative (RefSeq) compare
Sama_3622 +0.4 3.0 flagellar basal body-associated protein FliL-like protein (RefSeq) compare
Sama_1782 +0.4 1.9 hypothetical protein (RefSeq) compare
Sama_2061 +0.4 1.6 MutT/nudix family protein (RefSeq) compare
Sama_1497 pflA +0.4 2.3 pyruvate formate lyase-activating enzyme 1 (RefSeq) compare
Sama_2102 +0.4 1.2 hypothetical protein (RefSeq) compare
Sama_0464 +0.4 3.1 MSHA biogenesis protein MshO precursor (RefSeq) compare
Sama_0390 +0.4 1.4 hypothetical protein (RefSeq) compare
Sama_2307 +0.4 2.8 flagellin-like protein (RefSeq) compare
Sama_3290 +0.4 3.0 putative acyltransferase (RefSeq) compare
Sama_1109 +0.4 2.0 hypothetical protein (RefSeq) compare
Sama_0463 +0.4 2.6 MSHA pilin protein MshD (RefSeq) compare
Sama_1248 +0.4 2.7 hypothetical protein (RefSeq) compare
Sama_0458 +0.4 3.1 MSHA biogenesis protein MshG (RefSeq) compare
Sama_2081 grxA +0.4 1.8 glutaredoxin 1 (RefSeq) compare
Sama_2026 +0.4 3.3 TonB-dependent receptor (RefSeq) compare
Sama_3262 +0.4 3.1 OmpA/MotB (RefSeq) compare
Sama_1805 +0.4 2.2 aromatic amino acid aminotransferase (RefSeq) compare
Sama_3138 +0.4 2.0 hypothetical protein (RefSeq) compare
Sama_2331 +0.4 2.7 N-acylneuraminate-9-phosphate synthase (RefSeq) compare
Sama_1104 +0.4 2.6 response regulator receiver protein (RefSeq) compare
Sama_2300 +0.4 2.9 flagellar regulatory protein B (RefSeq) compare
Sama_3066 +0.4 2.1 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) compare
Sama_2476 +0.4 2.9 twitching motility protein (RefSeq) compare
Sama_1638 +0.4 1.6 hypothetical protein (RefSeq) compare
Sama_1330 +0.4 3.1 transcription-repair coupling factor (RefSeq) compare
Sama_0481 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_3001 +0.3 1.9 hypothetical protein (RefSeq) compare
Sama_1930 minC +0.3 1.6 septum formation inhibitor (RefSeq) compare
Sama_0963 +0.3 3.2 pseudouridylate synthase (RefSeq) compare
Sama_2354 +0.3 1.8 hypothetical protein (RefSeq) compare
Sama_2430 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_1883 +0.3 2.7 hypothetical protein (RefSeq) compare
Sama_0748 +0.3 2.5 response regulator receiver protein (RefSeq) compare
Sama_0617 +0.3 2.3 alkyl hydroperoxide reductase, C subunit (RefSeq) compare
Sama_0324 slmA +0.3 2.6 nucleoid occlusion protein (RefSeq) compare
Sama_1126 +0.3 2.1 acetyltransferase (RefSeq) compare
Sama_2243 +0.3 2.8 phosphoglucosamine mutase (RefSeq) compare
Sama_1754 +0.3 2.5 ecotin (RefSeq) compare
Sama_3510 ompR +0.3 2.6 osmolarity response regulator (RefSeq) compare
Sama_2802 +0.3 1.9 hypothetical protein (RefSeq) compare
Sama_1652 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_1629 +0.3 1.3 AsnC family transcriptional regulator (RefSeq) compare
Sama_1218 +0.3 2.3 tRNA-hydroxylase (RefSeq) compare
Sama_1027 +0.3 2.7 transporter, putative (RefSeq) compare
Sama_3524 moaA +0.3 2.2 molybdenum cofactor biosynthesis protein A (RefSeq) compare
Sama_2418 +0.3 2.6 GGDEF domain-containing protein (RefSeq) compare
Sama_2329 +0.3 2.2 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq) compare
Sama_0999 +0.3 1.9 hypothetical protein (RefSeq) compare
Sama_2020 +0.3 1.7 16 kDa heat shock protein A (RefSeq) compare
Sama_0747 +0.3 2.9 signal transduction histidine kinase-like protein (RefSeq) compare
Sama_2271 +0.3 1.8 hypothetical protein (RefSeq) compare
Sama_2119 +0.3 2.2 putative periplasmic protease (RefSeq) compare
Sama_1235 +0.3 1.9 peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) compare
Sama_1326 +0.3 2.2 beta-hexosaminidase (RefSeq) compare
Sama_1849 +0.3 1.7 alpha-L-glutamate ligase-related protein (RefSeq) compare
Sama_1622 +0.3 2.5 nitrate reductase catalytic subunit (RefSeq) compare
Sama_1010 +0.3 1.5 hypothetical protein (RefSeq) compare
Sama_1366 +0.3 2.0 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Sama_2023 +0.3 1.5 hypothetical protein (RefSeq) compare
Sama_3094 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_2434 +0.3 0.9 exodeoxyribonuclease VII, small subunit (RefSeq) compare
Sama_1741 +0.3 1.9 short chain dehydrogenase (RefSeq) compare
Sama_1949 +0.3 1.2 diguanylate cyclase, putative (RefSeq) compare
Sama_2621 +0.3 1.5 malate dehydrogenase (RefSeq) compare
Sama_1124 +0.3 1.2 hypothetical protein (RefSeq) compare
Sama_2417 +0.3 2.7 TPR domain-containing protein (RefSeq) compare
Sama_0053 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_3361 +0.3 2.5 phosphoglycolate phosphatase (RefSeq) compare
Sama_1394 +0.3 2.2 TonB-dependent receptor, plug (RefSeq) compare
Sama_3526 moaC +0.3 2.4 molybdenum cofactor biosynthesis protein C (RefSeq) compare
Sama_3363 +0.3 1.4 hypothetical protein (RefSeq) compare
Sama_0185 +0.3 2.1 putative acetyltransferase (RefSeq) compare
Sama_1577 +0.3 0.8 hypothetical protein (RefSeq) compare
Sama_1799 +0.3 1.5 fumarate/nitrate reduction transcriptional regulator (RefSeq) compare
Sama_0642 +0.3 1.0 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (RefSeq) compare
Sama_0264 +0.3 2.1 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Sama_0678 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_2299 +0.3 1.8 response regulator receiver protein (RefSeq) compare
Sama_1745 +0.3 1.1 hypothetical protein (RefSeq) compare
Sama_0452 +0.3 2.0 MSHA biogenesis protein MshJ (RefSeq) compare
Sama_2823 +0.3 2.0 hypothetical protein (RefSeq) compare
Sama_1967 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_0121 +0.3 1.2 molybdopterin-guanine dinucleotide biosynthesis protein (RefSeq) compare
Sama_0899 +0.3 1.6 ribosomal subunit interface protein (RefSeq) compare
Sama_2165 +0.3 1.3 hypothetical protein (RefSeq) compare
Sama_2617 +0.3 1.6 hypothetical protein (RefSeq) compare
Sama_1844 +0.3 2.5 extracellular solute-binding protein (RefSeq) compare
Sama_1092 +0.3 2.2 hypothetical protein (RefSeq) compare
Sama_1280 +0.3 2.1 carbon starvation protein (RefSeq) compare
Sama_2225 +0.3 0.8 ferredoxin-type protein NapF (RefSeq) compare
Sama_0801 +0.3 1.6 acetyltransferase (RefSeq) compare
Sama_1173 +0.3 1.4 thymidine kinase (RefSeq) compare
Sama_0453 +0.3 1.9 MSHA biogenesis protein MshK (RefSeq) compare
Sama_0629 +0.3 2.3 glycerol-3-phosphate dehydrogenase (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella amazonensis SB2B in temperature experiments