Experiment set5H32 for Pseudomonas stutzeri RCH2

Compare to:

LB 30C timecourse2 timepoint 1

200 most important genes:

  gene name fitness t score description  
Psest_1492 -4.7 -4.6 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_4142 -3.8 -2.5 hypothetical protein compare
Psest_3129 -3.2 -2.7 tyrosine recombinase XerD compare
Psest_4219 -3.1 -2.1 DNA polymerase I compare
Psest_0845 -2.8 -1.0 hypothetical protein compare
Psest_3995 -2.8 -2.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1167 -2.7 -1.7 hypothetical protein compare
Psest_2946 -2.5 -6.6 septum site-determining protein MinD compare
Psest_3456 -2.5 -1.5 RNA polymerase sigma factor, sigma-70 family compare
Psest_1947 -2.4 -4.4 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3123 -2.3 -4.4 dihydroorotase, homodimeric type compare
Psest_2944 -2.3 -4.9 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2651 -2.3 -4.9 DNA topoisomerase I, bacterial compare
Psest_1012 -2.1 -5.3 Signal transduction histidine kinase compare
Psest_0259 -2.1 -2.5 cell division ATP-binding protein FtsE compare
Psest_3693 -2.1 -1.5 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1013 -2.1 -5.1 phosphoribosylamine--glycine ligase compare
Psest_1999 -2.1 -2.6 pseudouridine synthase compare
Psest_3908 -2.1 -1.1 Cytochrome c553 compare
Psest_2671 -2.0 -2.4 Transcriptional regulator compare
Psest_3005 -2.0 -2.6 Fructose-2,6-bisphosphatase compare
Psest_3159 -1.9 -7.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2454 -1.9 -3.0 Rhodanese-related sulfurtransferase compare
Psest_3810 -1.9 -3.0 orotate phosphoribosyltransferase compare
Psest_0260 -1.8 -2.9 Cell division protein compare
Psest_1474 -1.8 -6.0 phosphoribosylaminoimidazole synthetase compare
Psest_1163 -1.8 -4.9 diguanylate cyclase (GGDEF) domain compare
Psest_0511 -1.7 -2.0 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_1242 -1.7 -3.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1574 -1.7 -2.2 phenazine biosynthesis protein PhzF family compare
Psest_4370 -1.6 -2.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2945 -1.6 -2.0 septum site-determining protein MinC compare
Psest_4197 -1.6 -2.5 general secretion pathway protein J compare
Psest_4191 -1.5 -2.3 Transcriptional regulator compare
Psest_0243 -1.5 -1.1 hypothetical protein compare
Psest_1388 -1.5 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2285 -1.5 -3.4 ATP-dependent protease La compare
Psest_2579 -1.5 -4.9 amidophosphoribosyltransferase compare
Psest_3045 -1.5 -2.7 Cold shock proteins compare
Psest_3701 -1.5 -2.8 3-oxoacyl-(acyl-carrier-protein) synthase compare
Psest_1473 -1.5 -6.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2809 -1.5 -4.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1161 -1.4 -1.4 E3 Ubiquitin ligase. compare
Psest_2714 -1.4 -2.5 7-cyano-7-deazaguanine reductase compare
Psest_0708 -1.4 -1.9 outer membrane assembly lipoprotein YfiO compare
Psest_2447 -1.4 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3767 -1.4 -2.8 tyrosine recombinase XerC compare
Psest_0193 -1.4 -1.2 conserved hypothetical protein compare
Psest_4098 -1.4 -2.8 Superfamily I DNA and RNA helicases compare
Psest_3185 -1.3 -2.0 MoxR-like ATPases compare
Psest_0094 -1.3 -1.5 Uncharacterized enzyme of phosphonate metabolism compare
Psest_2894 -1.3 -2.4 addiction module antidote protein, HigA family compare
Psest_1907 -1.3 -1.0 hypothetical protein compare
Psest_0064 -1.3 -0.9 Transcriptional regulator compare
Psest_1486 -1.3 -3.9 hypothetical protein compare
Psest_2764 -1.3 -1.1 hypothetical protein compare
Psest_1505 -1.2 -2.3 Organic radical activating enzymes compare
Psest_3988 -1.2 -5.1 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0725 -1.2 -2.5 Negative regulator of beta-lactamase expression compare
Psest_0320 -1.2 -2.6 ABC-type multidrug transport system, ATPase component compare
Psest_1078 -1.2 -2.1 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_3842 -1.2 -2.4 Transcriptional regulators compare
Psest_1506 -1.2 -3.7 queuosine biosynthesis protein QueC compare
Psest_2744 -1.1 -1.5 Uncharacterized conserved protein compare
Psest_1139 -1.1 -3.0 PAS domain S-box compare
Psest_3659 -1.1 -2.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0678 -1.1 -2.0 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_0650 -1.1 -2.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_2265 -1.1 -2.6 Outer membrane protein compare
Psest_3637 -1.1 -3.2 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_3180 -1.1 -5.9 Exonuclease I compare
Psest_1282 -1.1 -2.0 Amidases related to nicotinamidase compare
Psest_3470 -1.1 -2.8 Uncharacterized conserved protein compare
Psest_2630 -1.1 -2.7 hypothetical protein compare
Psest_0440 -1.1 -4.1 hypothetical protein compare
Psest_2370 -1.1 -1.7 Protein of unknown function (DUF1652). compare
Psest_1837 -1.0 -5.8 Endoglucanase compare
Psest_3044 -1.0 -4.3 deoxycytidine triphosphate deaminase compare
Psest_4203 -1.0 -2.8 NAD/NADP transhydrogenase alpha subunit compare
Psest_3479 -1.0 -1.8 molybdenum cofactor synthesis domain compare
Psest_0515 -1.0 -3.3 rare lipoprotein A compare
Psest_0385 -1.0 -1.1 Conserved secreted protein compare
Psest_3008 -1.0 -1.8 cobyric acid synthase CobQ compare
Psest_3419 -1.0 -4.5 Predicted transcriptional regulators compare
Psest_2123 -1.0 -0.9 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3626 -1.0 -4.5 hypothetical protein compare
Psest_3398 -1.0 -2.7 large conductance mechanosensitive channel protein compare
Psest_2848 -1.0 -3.0 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_2525 -1.0 -2.5 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_2933 -1.0 -6.5 Signal transduction histidine kinase compare
Psest_3944 -1.0 -1.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0031 -1.0 -0.8 Uncharacterized conserved protein compare
Psest_2232 -1.0 -6.9 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2130 -1.0 -1.8 exodeoxyribonuclease III compare
Psest_0691 -1.0 -6.4 ribonuclease R compare
Psest_0489 -1.0 -2.1 phosphoserine phosphatase SerB compare
Psest_1270 -1.0 -2.6 hypothetical protein compare
Psest_0093 -1.0 -1.8 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3824 -0.9 -1.7 Predicted membrane protein compare
Psest_2864 -0.9 -3.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0257 -0.9 -2.1 Predicted Zn-dependent peptidases compare
Psest_2419 -0.9 -3.1 AraC-type DNA-binding domain-containing proteins compare
Psest_1814 -0.9 -6.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4371 -0.9 -1.7 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0054 -0.9 -1.7 hypothetical protein compare
Psest_1259 -0.9 -3.9 23S rRNA m2A2503 methyltransferase compare
Psest_1496 -0.9 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_0225 -0.9 -0.9 Predicted permease, DMT superfamily compare
Psest_0445 -0.9 -6.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2537 -0.9 -5.5 oxygen-independent coproporphyrinogen III oxidase compare
Psest_2872 -0.9 -1.4 protein RecA compare
Psest_3664 -0.9 -1.6 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0442 -0.9 -4.6 ATPases of the AAA+ class compare
Psest_1631 -0.9 -0.9 Uncharacterized conserved small protein compare
Psest_3543 -0.9 -1.6 hypothetical protein compare
Psest_4044 -0.9 -4.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1791 -0.9 -2.1 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_3178 -0.9 -2.4 formyltetrahydrofolate deformylase compare
Psest_1453 -0.9 -3.9 Glycerol-3-phosphate dehydrogenase compare
Psest_3181 -0.9 -3.7 Predicted membrane protein/domain compare
Psest_2480 -0.9 -2.1 Methyl-accepting chemotaxis protein compare
Psest_2718 -0.9 -1.3 hypothetical protein compare
Psest_4103 -0.9 -1.2 AraC-type DNA-binding domain-containing proteins compare
Psest_1306 -0.9 -1.3 hypothetical protein compare
Psest_0120 -0.9 -2.1 hypothetical protein compare
Psest_3166 -0.9 -4.3 Superfamily II DNA and RNA helicases compare
Psest_3745 -0.8 -1.5 Uncharacterized enzyme of heme biosynthesis compare
Psest_3148 -0.8 -1.3 hypothetical protein compare
Psest_3174 -0.8 -6.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3860 -0.8 -2.0 Predicted permeases compare
Psest_3413 -0.8 -1.9 hypothetical protein compare
Psest_0790 -0.8 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_1704 -0.8 -1.4 Dehydrogenases (flavoproteins) compare
Psest_3188 -0.8 -2.0 hypothetical protein compare
Psest_3183 -0.8 -3.2 hypothetical protein compare
Psest_1860 -0.8 -1.7 Uncharacterized conserved protein compare
Psest_2885 -0.8 -1.0 Acyl carrier protein compare
Psest_1296 -0.8 -4.2 excinuclease ABC, B subunit compare
Psest_1809 -0.8 -4.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2293 -0.8 -1.3 hypothetical protein compare
Psest_0348 -0.8 -2.3 hypothetical protein compare
Psest_4247 -0.8 -1.0 Serine/threonine protein phosphatase compare
Psest_3888 -0.8 -3.2 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_3146 -0.8 -1.1 hypothetical protein compare
Psest_3173 -0.8 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2778 -0.8 -2.4 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2037 -0.8 -2.9 uroporphyrin-III C-methyltransferase compare
Psest_3823 -0.8 -1.8 hypothetical protein compare
Psest_3170 -0.8 -3.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1448 -0.8 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_0376 -0.8 -2.3 glucarate dehydratase compare
Psest_1822 -0.8 -4.4 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1327 -0.8 -5.3 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_1392 -0.8 -1.5 ABC-type uncharacterized transport systems, ATPase components compare
Psest_0601 -0.8 -1.2 hypothetical protein compare
Psest_2277 -0.8 -2.9 coenzyme PQQ biosynthesis protein A compare
Psest_0520 -0.7 -0.8 hypothetical protein compare
Psest_3894 -0.7 -2.2 Carbon starvation protein, predicted membrane protein compare
Psest_1471 -0.7 -3.0 Predicted membrane protein compare
Psest_2122 -0.7 -0.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3537 -0.7 -2.4 hypothetical protein compare
Psest_2847 -0.7 -1.7 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_3182 -0.7 -4.2 Uncharacterized membrane protein compare
Psest_3158 -0.7 -2.7 hypothetical protein compare
Psest_0367 -0.7 -0.9 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_0765 -0.7 -2.5 hypothetical protein compare
Psest_0837 -0.7 -1.1 Putative lipid carrier protein compare
Psest_1459 -0.7 -1.8 hypothetical protein compare
Psest_0574 -0.7 -2.2 hypothetical protein compare
Psest_3556 -0.7 -1.7 2'-5' RNA ligase compare
Psest_1643 -0.7 -0.9 hypothetical protein compare
Psest_3744 -0.7 -2.3 Disulfide bond formation protein DsbB compare
Psest_1479 -0.7 -2.0 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_0297 -0.7 -2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1491 -0.7 -1.3 Cold shock proteins compare
Psest_3903 -0.7 -3.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_4108 -0.7 -1.1 seryl-tRNA(sec) selenium transferase compare
Psest_0087 -0.7 -2.0 hypothetical protein compare
Psest_0516 -0.7 -4.4 D-alanyl-D-alanine carboxypeptidase compare
Psest_1525 -0.7 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2053 -0.7 -1.7 Uncharacterized low-complexity proteins compare
Psest_0884 -0.7 -3.8 Toxin with endonuclease activity YhaV. compare
Psest_3904 -0.7 -0.4 hypothetical protein compare
Psest_0045 -0.7 -1.6 hypothetical protein compare
Psest_0364 -0.7 -2.3 Gluconolactonase compare
Psest_1295 -0.7 -3.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1681 -0.7 -1.9 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_2342 -0.7 -3.1 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_4276 -0.7 -1.6 hypothetical protein compare
Psest_3822 -0.7 -1.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_4049 -0.7 -1.0 hypothetical protein compare
Psest_0485 -0.7 -1.5 clan AA aspartic protease, TIGR02281 family compare
Psest_3697 -0.7 -0.5 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1750 -0.7 -1.0 Protein of unknown function (DUF2802). compare
Psest_0249 -0.7 -2.2 UDP-N-acetylglucosamine 2-epimerase compare
Psest_1813 -0.7 -4.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3662 -0.6 -1.2 DnaJ-domain-containing proteins 1 compare
Psest_0724 -0.6 -1.8 Deoxyinosine 3'endonuclease (endonuclease V) compare
Psest_0954 -0.6 -3.3 Fe-S oxidoreductase compare
Psest_0112 -0.6 -2.4 Transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment