Experiment set5H31 for Pseudomonas stutzeri RCH2

Compare to:

LB 30C timecourse1 timepoint 3

200 most important genes:

  gene name fitness t score description  
Psest_2944 -6.9 -4.8 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0442 -6.3 -6.1 ATPases of the AAA+ class compare
Psest_1474 -4.6 -3.2 phosphoribosylaminoimidazole synthetase compare
Psest_1496 -4.5 -2.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_2872 -4.5 -3.1 protein RecA compare
Psest_2946 -4.4 -6.1 septum site-determining protein MinD compare
Psest_0489 -4.3 -4.2 phosphoserine phosphatase SerB compare
Psest_2945 -4.2 -4.1 septum site-determining protein MinC compare
Psest_3129 -4.2 -2.9 tyrosine recombinase XerD compare
Psest_1492 -4.2 -12.8 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2579 -4.2 -5.0 amidophosphoribosyltransferase compare
Psest_3810 -4.2 -4.0 orotate phosphoribosyltransferase compare
Psest_1704 -4.1 -2.8 Dehydrogenases (flavoproteins) compare
Psest_3159 -3.9 -12.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2285 -3.9 -6.9 ATP-dependent protease La compare
Psest_1505 -3.8 -4.4 Organic radical activating enzymes compare
Psest_0999 -3.8 -4.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3092 -3.8 -2.6 ribonuclease III, bacterial compare
Psest_1661 -3.7 -4.4 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3960 -3.7 -2.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1947 -3.7 -2.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1657 -3.4 -4.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1659 -3.3 -5.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4219 -3.3 -2.3 DNA polymerase I compare
Psest_1660 -3.3 -4.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0843 -3.2 -4.9 hypothetical protein compare
Psest_0844 -3.2 -3.7 High-affinity Fe2+/Pb2+ permease compare
Psest_1013 -3.1 -5.2 phosphoribosylamine--glycine ligase compare
Psest_4315 -3.1 -2.1 ABC-type metal ion transport system, permease component compare
Psest_1656 -3.1 -5.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3123 -3.0 -6.3 dihydroorotase, homodimeric type compare
Psest_1804 -3.0 -4.8 Superfamily II DNA and RNA helicases compare
Psest_1655 -3.0 -7.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0845 -2.9 -1.0 hypothetical protein compare
Psest_2232 -2.9 -9.5 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2651 -2.8 -4.8 DNA topoisomerase I, bacterial compare
Psest_1012 -2.8 -5.3 Signal transduction histidine kinase compare
Psest_4078 -2.8 -2.7 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1163 -2.8 -6.0 diguanylate cyclase (GGDEF) domain compare
Psest_1473 -2.7 -7.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0498 -2.7 -2.2 ribosome small subunit-dependent GTPase A compare
Psest_4044 -2.7 -11.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2719 -2.6 -4.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2104 -2.6 -4.4 IscR-regulated protein YhgI compare
Psest_2067 -2.5 -2.1 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0846 -2.4 -2.8 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_0417 -2.4 -3.2 Acyl-CoA dehydrogenases compare
Psest_1249 -2.4 -11.3 serine O-acetyltransferase compare
Psest_3565 -2.4 -1.9 hypothetical protein compare
Psest_3767 -2.4 -1.6 tyrosine recombinase XerC compare
Psest_2590 -2.3 -2.2 3-isopropylmalate dehydratase, small subunit compare
Psest_3230 -2.3 -6.9 Uncharacterized conserved protein compare
Psest_1879 -2.2 -4.1 Trk-type K+ transport systems, membrane components compare
Psest_4098 -2.2 -4.1 Superfamily I DNA and RNA helicases compare
Psest_3146 -2.2 -2.9 hypothetical protein compare
Psest_0958 -2.2 -10.4 Oligoketide cyclase/lipid transport protein compare
Psest_3045 -2.1 -3.7 Cold shock proteins compare
Psest_1922 -2.1 -7.9 aminopeptidase N, Escherichia coli type compare
Psest_2545 -2.1 -6.1 recombination protein RecR compare
Psest_1814 -2.0 -12.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0281 -2.0 -6.0 Dynamin family. compare
Psest_3338 -2.0 -2.3 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2775 -2.0 -5.4 Glycerol-3-phosphate dehydrogenase compare
Psest_1082 -2.0 -1.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_4003 -2.0 -5.3 TIGR00153 family protein compare
Psest_0515 -2.0 -4.7 rare lipoprotein A compare
Psest_2933 -1.9 -9.4 Signal transduction histidine kinase compare
Psest_1079 -1.9 -1.3 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_4363 -1.9 -9.8 ATPases involved in chromosome partitioning compare
Psest_3174 -1.9 -11.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1295 -1.9 -8.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1824 -1.9 -4.2 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_4191 -1.8 -2.9 Transcriptional regulator compare
Psest_1663 -1.8 -3.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2714 -1.8 -3.3 7-cyano-7-deazaguanine reductase compare
Psest_1813 -1.8 -9.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2358 -1.8 -1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3270 -1.8 -2.3 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2712 -1.7 -5.9 Surface lipoprotein compare
Psest_1994 -1.7 -3.8 Amidases related to nicotinamidase compare
Psest_3637 -1.7 -4.8 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_0516 -1.7 -9.8 D-alanyl-D-alanine carboxypeptidase compare
Psest_3180 -1.7 -8.0 Exonuclease I compare
Psest_0708 -1.7 -2.6 outer membrane assembly lipoprotein YfiO compare
Psest_2122 -1.7 -1.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3860 -1.6 -3.4 Predicted permeases compare
Psest_1565 -1.6 -4.1 RND family efflux transporter, MFP subunit compare
Psest_0998 -1.6 -3.5 poly(A) polymerase compare
Psest_0312 -1.6 -4.9 Superfamily II DNA and RNA helicases compare
Psest_0485 -1.6 -2.4 clan AA aspartic protease, TIGR02281 family compare
Psest_0691 -1.6 -10.0 ribonuclease R compare
Psest_0508 -1.6 -7.3 gamma-glutamyl phosphate reductase compare
Psest_3878 -1.5 -2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2981 -1.5 -2.7 sodium pump decarboxylases, gamma subunit compare
Psest_0175 -1.5 -6.3 Xaa-Pro aminopeptidase compare
Psest_0020 -1.5 -4.0 K+ transport systems, NAD-binding component compare
Psest_3998 -1.5 -4.6 glutamate--cysteine ligase compare
Psest_1532 -1.5 -3.7 DNA recombination-dependent growth factor C compare
Psest_1111 -1.5 -3.4 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1868 -1.5 -6.2 yecA family protein compare
Psest_1506 -1.5 -5.1 queuosine biosynthesis protein QueC compare
Psest_1241 -1.5 -6.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_1259 -1.5 -5.0 23S rRNA m2A2503 methyltransferase compare
Psest_0292 -1.4 -2.5 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2018 -1.4 -3.7 Uncharacterized conserved protein compare
Psest_0722 -1.4 -7.3 Predicted ATPase compare
Psest_1486 -1.4 -4.5 hypothetical protein compare
Psest_3419 -1.4 -6.3 Predicted transcriptional regulators compare
Psest_2643 -1.4 -2.3 Beta-glucosidase-related glycosidases compare
Psest_0466 -1.4 -3.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3351 -1.4 -6.0 peptide chain release factor 3 compare
Psest_3090 -1.4 -4.8 DNA repair protein RecO compare
Psest_4274 -1.4 -4.1 hypothetical protein compare
Psest_0028 -1.4 -4.4 Coproporphyrinogen III oxidase compare
Psest_0212 -1.3 -1.2 exodeoxyribonuclease V, gamma subunit compare
Psest_3399 -1.3 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0520 -1.3 -1.2 hypothetical protein compare
Psest_0313 -1.3 -3.7 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1001 -1.3 -1.7 hypothetical protein compare
Psest_0709 -1.3 -7.8 pseudouridine synthase, RluA family compare
Psest_3173 -1.3 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_3307 -1.3 -5.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_4103 -1.3 -1.7 AraC-type DNA-binding domain-containing proteins compare
Psest_3664 -1.3 -2.5 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_1510 -1.3 -4.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1292 -1.3 -7.1 monothiol glutaredoxin, Grx4 family compare
Psest_3303 -1.3 -5.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2308 -1.2 -1.6 Predicted Fe-S protein compare
Psest_3044 -1.2 -5.9 deoxycytidine triphosphate deaminase compare
Psest_2566 -1.2 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3988 -1.2 -5.0 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0440 -1.2 -3.0 hypothetical protein compare
Psest_1327 -1.2 -6.5 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_0718 -1.2 -3.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_1498 -1.2 -2.3 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3391 -1.2 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3926 -1.2 -6.8 GTP-binding protein TypA/BipA compare
Psest_1837 -1.2 -4.6 Endoglucanase compare
Psest_3795 -1.2 -6.1 Glycine/D-amino acid oxidases (deaminating) compare
Psest_0297 -1.2 -3.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3305 -1.2 -5.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1525 -1.2 -4.7 Uncharacterized protein conserved in bacteria compare
Psest_2612 -1.2 -4.2 hypothetical protein compare
Psest_3927 -1.2 -3.6 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1103 -1.2 -2.9 GTP-binding protein YchF compare
Psest_3816 -1.2 -1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_3306 -1.2 -2.8 conserved hypothetical integral membrane protein compare
Psest_2810 -1.2 -4.7 5'/3'-nucleotidase SurE compare
Psest_1000 -1.2 -6.1 PAS domain S-box compare
Psest_3005 -1.2 -1.7 Fructose-2,6-bisphosphatase compare
Psest_2288 -1.2 -4.2 trigger factor compare
Psest_0359 -1.2 -1.8 Transcriptional regulators compare
Psest_2023 -1.1 -3.7 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_1509 -1.1 -6.2 quinolinate synthetase complex, A subunit compare
Psest_3178 -1.1 -2.0 formyltetrahydrofolate deformylase compare
Psest_0476 -1.1 -5.1 type I secretion outer membrane protein, TolC family compare
Psest_3177 -1.1 -1.9 hypothetical protein compare
Psest_3166 -1.1 -5.6 Superfamily II DNA and RNA helicases compare
Psest_1144 -1.1 -3.8 AmpG-related permease compare
Psest_2524 -1.1 -5.4 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2096 -1.1 -1.9 Domain of unknown function (DUF1883). compare
Psest_0725 -1.1 -2.6 Negative regulator of beta-lactamase expression compare
Psest_0119 -1.1 -1.8 hypothetical protein compare
Psest_1700 -1.1 -3.1 Transcriptional regulator compare
Psest_3576 -1.1 -8.8 excinuclease ABC, A subunit compare
Psest_3384 -1.1 -4.7 glutamate 5-kinase compare
Psest_2527 -1.1 -5.2 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1235 -1.1 -4.6 Leucyl aminopeptidase compare
Psest_0697 -1.1 -2.7 ribosomal protein L9 compare
Psest_1008 -1.1 -1.2 hypothetical protein compare
Psest_4221 -1.1 -2.5 homoserine kinase, Neisseria type compare
Psest_3531 -1.1 -1.3 Peptidase propeptide and YPEB domain. compare
Psest_3884 -1.1 -0.7 Signal transduction histidine kinase compare
Psest_1516 -1.1 -1.2 Uncharacterized lipoprotein compare
Psest_1653 -1.1 -7.6 transcription-repair coupling factor (mfd) compare
Psest_0094 -1.1 -1.2 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3187 -1.1 -4.1 hypothetical protein compare
Psest_0852 -1.1 -2.9 glucose-6-phosphate 1-dehydrogenase compare
Psest_2532 -1.0 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_1772 -1.0 -4.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4310 -1.0 -1.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2011 -1.0 -6.8 Predicted permease compare
Psest_4252 -1.0 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_1681 -1.0 -3.3 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_2537 -1.0 -4.7 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0740 -1.0 -1.4 Transcriptional regulator compare
Psest_4285 -1.0 -5.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Psest_2953 -1.0 -2.6 Histone acetyltransferase compare
Psest_3148 -1.0 -1.4 hypothetical protein compare
Psest_3578 -1.0 -7.9 Catalase compare
Psest_3151 -1.0 -3.0 hypothetical protein compare
Psest_1242 -1.0 -1.7 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0277 -1.0 -1.3 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2954 -1.0 -4.1 hypothetical protein compare
Psest_2238 -1.0 -2.4 hypothetical protein compare
Psest_2333 -1.0 -0.9 Protein of unknown function (DUF3359). compare
Psest_2278 -1.0 -3.5 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2850 -1.0 -1.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_4021 -1.0 -4.0 hypothetical protein compare
Psest_2120 -1.0 -0.6 Transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment