Experiment set5H30 for Pseudomonas stutzeri RCH2

Compare to:

LB 30C timecourse1 timepoint 2

200 most important genes:

  gene name fitness t score description  
Psest_1492 -5.0 -5.9 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2944 -4.7 -8.8 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0442 -4.4 -12.7 ATPases of the AAA+ class compare
Psest_3810 -3.7 -4.4 orotate phosphoribosyltransferase compare
Psest_1496 -3.6 -3.4 Holliday junction DNA helicase, RuvA subunit compare
Psest_1704 -3.5 -4.0 Dehydrogenases (flavoproteins) compare
Psest_1947 -3.4 -4.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2308 -3.1 -2.2 Predicted Fe-S protein compare
Psest_1474 -3.1 -9.7 phosphoribosylaminoimidazole synthetase compare
Psest_4219 -2.9 -2.8 DNA polymerase I compare
Psest_0498 -2.8 -2.6 ribosome small subunit-dependent GTPase A compare
Psest_1655 -2.7 -8.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2872 -2.7 -3.3 protein RecA compare
Psest_3123 -2.6 -4.6 dihydroorotase, homodimeric type compare
Psest_3550 -2.6 -3.0 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0489 -2.6 -5.6 phosphoserine phosphatase SerB compare
Psest_2719 -2.5 -5.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2651 -2.5 -5.3 DNA topoisomerase I, bacterial compare
Psest_2579 -2.5 -8.8 amidophosphoribosyltransferase compare
Psest_1013 -2.4 -6.0 phosphoribosylamine--glycine ligase compare
Psest_4098 -2.4 -4.4 Superfamily I DNA and RNA helicases compare
Psest_1804 -2.3 -4.8 Superfamily II DNA and RNA helicases compare
Psest_1657 -2.3 -2.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0999 -2.3 -4.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4142 -2.3 -2.1 hypothetical protein compare
Psest_1656 -2.2 -4.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0417 -2.2 -3.8 Acyl-CoA dehydrogenases compare
Psest_4191 -2.2 -2.5 Transcriptional regulator compare
Psest_2775 -2.1 -5.0 Glycerol-3-phosphate dehydrogenase compare
Psest_2945 -2.1 -2.2 septum site-determining protein MinC compare
Psest_1659 -2.1 -4.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0515 -2.1 -5.4 rare lipoprotein A compare
Psest_1079 -2.0 -2.3 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_4078 -2.0 -3.4 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3637 -2.0 -6.6 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_3927 -2.0 -6.9 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0846 -2.0 -3.1 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2946 -1.9 -5.4 septum site-determining protein MinD compare
Psest_0958 -1.9 -9.0 Oligoketide cyclase/lipid transport protein compare
Psest_3998 -1.8 -5.1 glutamate--cysteine ligase compare
Psest_3159 -1.8 -7.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2285 -1.8 -4.4 ATP-dependent protease La compare
Psest_3960 -1.7 -2.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2104 -1.7 -3.6 IscR-regulated protein YhgI compare
Psest_2018 -1.7 -3.7 Uncharacterized conserved protein compare
Psest_4044 -1.7 -8.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3092 -1.7 -2.1 ribonuclease III, bacterial compare
Psest_1491 -1.7 -4.2 Cold shock proteins compare
Psest_0243 -1.6 -1.2 hypothetical protein compare
Psest_0845 -1.6 -0.9 hypothetical protein compare
Psest_1661 -1.6 -3.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1082 -1.6 -1.7 Enoyl-CoA hydratase/carnithine racemase compare
Psest_4196 -1.6 -2.5 Type II secretory pathway, component PulK compare
Psest_0844 -1.6 -3.3 High-affinity Fe2+/Pb2+ permease compare
Psest_3351 -1.6 -7.1 peptide chain release factor 3 compare
Psest_0843 -1.6 -6.7 hypothetical protein compare
Psest_3129 -1.5 -1.7 tyrosine recombinase XerD compare
Psest_2358 -1.5 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3008 -1.5 -2.3 cobyric acid synthase CobQ compare
Psest_3884 -1.5 -1.0 Signal transduction histidine kinase compare
Psest_2643 -1.5 -3.4 Beta-glucosidase-related glycosidases compare
Psest_1602 -1.5 -1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0259 -1.4 -2.6 cell division ATP-binding protein FtsE compare
Psest_3146 -1.4 -3.4 hypothetical protein compare
Psest_1814 -1.4 -9.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1242 -1.4 -2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3664 -1.3 -2.8 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_1249 -1.3 -8.0 serine O-acetyltransferase compare
Psest_0466 -1.3 -4.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0722 -1.3 -7.5 Predicted ATPase compare
Psest_0225 -1.3 -1.9 Predicted permease, DMT superfamily compare
Psest_4003 -1.3 -3.4 TIGR00153 family protein compare
Psest_2122 -1.3 -1.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1163 -1.3 -3.9 diguanylate cyclase (GGDEF) domain compare
Psest_1486 -1.2 -3.5 hypothetical protein compare
Psest_0175 -1.2 -5.8 Xaa-Pro aminopeptidase compare
Psest_0028 -1.2 -4.3 Coproporphyrinogen III oxidase compare
Psest_2712 -1.2 -4.9 Surface lipoprotein compare
Psest_0260 -1.2 -1.6 Cell division protein compare
Psest_0516 -1.2 -6.8 D-alanyl-D-alanine carboxypeptidase compare
Psest_1295 -1.2 -6.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2123 -1.2 -1.1 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3937 -1.2 -1.7 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0969 -1.2 -3.6 transcription elongation factor GreA compare
Psest_3546 -1.2 -0.8 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3556 -1.2 -3.2 2'-5' RNA ligase compare
Psest_1518 -1.2 -2.6 tRNA_Ser_CGA compare
Psest_1012 -1.2 -2.6 Signal transduction histidine kinase compare
Psest_2532 -1.2 -4.9 Uncharacterized protein conserved in bacteria compare
Psest_0691 -1.2 -7.9 ribonuclease R compare
Psest_0312 -1.2 -4.3 Superfamily II DNA and RNA helicases compare
Psest_3816 -1.2 -1.2 DNA-directed RNA polymerase, omega subunit compare
Psest_0133 -1.2 -1.3 type VI secretion protein, VC_A0107 family compare
Psest_3399 -1.1 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1473 -1.1 -5.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3767 -1.1 -2.7 tyrosine recombinase XerC compare
Psest_1516 -1.1 -2.0 Uncharacterized lipoprotein compare
Psest_2581 -1.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0959 -1.1 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_3626 -1.1 -5.5 hypothetical protein compare
Psest_2885 -1.1 -1.8 Acyl carrier protein compare
Psest_1144 -1.1 -3.8 AmpG-related permease compare
Psest_1259 -1.1 -4.2 23S rRNA m2A2503 methyltransferase compare
Psest_1111 -1.1 -2.7 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3230 -1.1 -4.3 Uncharacterized conserved protein compare
Psest_1532 -1.1 -2.9 DNA recombination-dependent growth factor C compare
Psest_1292 -1.1 -6.7 monothiol glutaredoxin, Grx4 family compare
Psest_2809 -1.0 -2.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1660 -1.0 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0292 -1.0 -2.7 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0511 -1.0 -1.4 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_1681 -1.0 -3.2 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_2023 -1.0 -2.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_2527 -1.0 -5.5 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4363 -1.0 -5.5 ATPases involved in chromosome partitioning compare
Psest_1506 -1.0 -4.2 queuosine biosynthesis protein QueC compare
Psest_3303 -1.0 -3.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2630 -1.0 -2.8 hypothetical protein compare
Psest_3306 -1.0 -2.7 conserved hypothetical integral membrane protein compare
Psest_3185 -0.9 -1.7 MoxR-like ATPases compare
Psest_2714 -0.9 -1.8 7-cyano-7-deazaguanine reductase compare
Psest_3790 -0.9 -5.6 Cytochrome c5 compare
Psest_0310 -0.9 -2.3 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2304 -0.9 -1.9 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0212 -0.9 -1.0 exodeoxyribonuclease V, gamma subunit compare
Psest_0390 -0.9 -1.6 Short-chain dehydrogenases of various substrate specificities compare
Psest_0709 -0.9 -6.2 pseudouridine synthase, RluA family compare
Psest_1103 -0.9 -1.6 GTP-binding protein YchF compare
Psest_0514 -0.9 -4.1 lytic murein transglycosylase B compare
Psest_2530 -0.9 -5.4 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3860 -0.9 -1.8 Predicted permeases compare
Psest_4274 -0.9 -2.9 hypothetical protein compare
Psest_1663 -0.9 -2.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_4103 -0.9 -1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_1922 -0.9 -4.7 aminopeptidase N, Escherichia coli type compare
Psest_2894 -0.9 -2.5 addiction module antidote protein, HigA family compare
Psest_2405 -0.9 -2.0 NAD-dependent protein deacetylases, SIR2 family compare
Psest_3662 -0.9 -1.4 DnaJ-domain-containing proteins 1 compare
Psest_3988 -0.9 -4.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0852 -0.9 -2.9 glucose-6-phosphate 1-dehydrogenase compare
Psest_0508 -0.8 -4.1 gamma-glutamyl phosphate reductase compare
Psest_2348 -0.8 -1.3 urea carboxylase-associated protein 2 compare
Psest_3113 -0.8 -2.3 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3305 -0.8 -4.2 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2545 -0.8 -2.0 recombination protein RecR compare
Psest_0165 -0.8 -1.7 protein-export chaperone SecB compare
Psest_4305 -0.8 -2.7 NAD-dependent aldehyde dehydrogenases compare
Psest_3186 -0.8 -2.9 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_1574 -0.8 -1.9 phenazine biosynthesis protein PhzF family compare
Psest_1001 -0.8 -3.1 hypothetical protein compare
Psest_1296 -0.8 -5.0 excinuclease ABC, B subunit compare
Psest_2333 -0.8 -1.0 Protein of unknown function (DUF3359). compare
Psest_0103 -0.8 -1.4 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_1000 -0.8 -5.3 PAS domain S-box compare
Psest_2907 -0.8 -1.6 Protein of unknown function (DUF3618). compare
Psest_3458 -0.8 -1.2 hypothetical protein compare
Psest_1315 -0.8 -1.2 hypothetical protein compare
Psest_3304 -0.8 -3.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2646 -0.8 -2.4 SOS regulatory protein LexA compare
Psest_3453 -0.8 -2.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_2718 -0.8 -1.3 hypothetical protein compare
Psest_2277 -0.8 -2.4 coenzyme PQQ biosynthesis protein A compare
Psest_3180 -0.8 -5.1 Exonuclease I compare
Psest_4370 -0.8 -2.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0697 -0.8 -3.4 ribosomal protein L9 compare
Psest_3384 -0.8 -3.6 glutamate 5-kinase compare
Psest_1824 -0.8 -2.2 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0998 -0.8 -1.6 poly(A) polymerase compare
Psest_3448 -0.8 -2.5 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
Psest_0737 -0.7 -0.6 Cu(I)-responsive transcriptional regulator compare
Psest_1868 -0.7 -2.7 yecA family protein compare
Psest_3850 -0.7 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3531 -0.7 -1.3 Peptidase propeptide and YPEB domain. compare
Psest_1700 -0.7 -2.3 Transcriptional regulator compare
Psest_1472 -0.7 -3.9 Protein of unknown function (DUF3108). compare
Psest_2001 -0.7 -2.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2293 -0.7 -1.5 hypothetical protein compare
Psest_2022 -0.7 -1.8 ADP-ribose pyrophosphatase compare
Psest_4316 -0.7 -2.0 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_1505 -0.7 -2.0 Organic radical activating enzymes compare
Psest_2585 -0.7 -1.1 pseudouridylate synthase I compare
Psest_1695 -0.7 -2.2 Tfp pilus assembly protein PilZ compare
Psest_0568 -0.7 -1.5 pseudouridine synthase compare
Psest_1691 -0.7 -1.8 aminodeoxychorismate lyase compare
Psest_1489 -0.7 -2.2 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_0035 -0.7 -2.2 hypothetical protein compare
Psest_1813 -0.7 -5.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3502 -0.7 -0.9 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_2015 -0.7 -2.2 Type II secretory pathway, component PulD compare
Psest_1167 -0.7 -0.9 hypothetical protein compare
Psest_4310 -0.7 -0.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1235 -0.7 -3.6 Leucyl aminopeptidase compare
Psest_2316 -0.7 -5.1 phosphoenolpyruvate synthase compare
Psest_0609 -0.7 -1.5 hypothetical protein compare
Psest_1819 -0.7 -6.0 Nucleoside-diphosphate-sugar epimerases compare
Psest_0922 -0.7 -2.6 alkylhydroperoxidase AhpD family core domain compare
Psest_4257 -0.7 -2.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0161 -0.7 -1.2 Membrane-bound metallopeptidase compare
Psest_1052 -0.7 -1.8 Uncharacterized protein involved in chromosome partitioning compare
Psest_0708 -0.7 -1.3 outer membrane assembly lipoprotein YfiO compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in temperature experiments