Experiment set5H3 for Shewanella oneidensis MR-1

Compare to:

LB with methylglyoxal 0.004 vol%

Group: stress
Media: LB + methylglyoxal (0.004 vol%)
Culturing: MR1_ML3, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Adam on 8/19/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 652 A7,A8

Specific Phenotypes

For 12 genes in this experiment

For stress methylglyoxal in Shewanella oneidensis MR-1

For stress methylglyoxal across organisms

SEED Subsystems

Subsystem #Specific
DNA-replication 2
DNA Repair Base Excision 2
DNA repair, UvrABC system 2
Glutathione: Non-redox reactions 2
Methylglyoxal Metabolism 2
DNA repair, bacterial 1
DNA repair, bacterial DinG and relatives 1
DNA repair, bacterial RecFOR pathway 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
methylglyoxal degradation VIII 3 2 2
methylglyoxal degradation I 3 2 2
superpathway of methylglyoxal degradation 8 4 2