Experiment set5H29 for Pseudomonas stutzeri RCH2

Compare to:

LB 30C timecourse1 timepoint 1

200 most important genes:

  gene name fitness t score description  
Psest_1366 -4.4 -3.0 hypothetical protein compare
Psest_1496 -4.3 -2.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_1492 -4.2 -8.5 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2945 -3.6 -4.1 septum site-determining protein MinC compare
Psest_2946 -3.5 -7.4 septum site-determining protein MinD compare
Psest_2585 -3.3 -1.8 pseudouridylate synthase I compare
Psest_0737 -3.0 -1.2 Cu(I)-responsive transcriptional regulator compare
Psest_3092 -3.0 -2.8 ribonuclease III, bacterial compare
Psest_1947 -2.6 -4.3 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2358 -2.5 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0417 -2.5 -3.0 Acyl-CoA dehydrogenases compare
Psest_1474 -2.4 -8.3 phosphoribosylaminoimidazole synthetase compare
Psest_1013 -2.4 -5.3 phosphoribosylamine--glycine ligase compare
Psest_2944 -2.3 -5.7 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_3531 -2.2 -2.3 Peptidase propeptide and YPEB domain. compare
Psest_1012 -2.2 -5.4 Signal transduction histidine kinase compare
Psest_2579 -2.2 -7.7 amidophosphoribosyltransferase compare
Psest_0814 -2.1 -3.1 MoxR-like ATPases compare
Psest_4219 -2.1 -2.8 DNA polymerase I compare
Psest_3159 -2.1 -8.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2122 -2.1 -1.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1103 -2.1 -3.9 GTP-binding protein YchF compare
Psest_2651 -2.0 -4.3 DNA topoisomerase I, bacterial compare
Psest_3810 -2.0 -3.3 orotate phosphoribosyltransferase compare
Psest_3960 -2.0 -1.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2872 -2.0 -3.2 protein RecA compare
Psest_2285 -1.9 -5.7 ATP-dependent protease La compare
Psest_1999 -1.9 -1.7 pseudouridine synthase compare
Psest_0094 -1.9 -1.8 Uncharacterized enzyme of phosphonate metabolism compare
Psest_4056 -1.8 -2.1 FMN reductase, SsuE family compare
Psest_1516 -1.8 -3.4 Uncharacterized lipoprotein compare
Psest_3664 -1.7 -2.9 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_4191 -1.7 -2.3 Transcriptional regulator compare
Psest_0093 -1.7 -1.9 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3502 -1.6 -1.9 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_1679 -1.6 -1.5 ribonuclease, Rne/Rng family compare
Psest_2243 -1.5 -1.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1704 -1.5 -2.1 Dehydrogenases (flavoproteins) compare
Psest_1657 -1.5 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0031 -1.5 -1.2 Uncharacterized conserved protein compare
Psest_1361 -1.5 -3.4 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_0515 -1.5 -3.9 rare lipoprotein A compare
Psest_1306 -1.5 -1.7 hypothetical protein compare
Psest_3129 -1.5 -1.7 tyrosine recombinase XerD compare
Psest_3904 -1.5 -0.8 hypothetical protein compare
Psest_2714 -1.5 -2.5 7-cyano-7-deazaguanine reductase compare
Psest_3565 -1.5 -1.6 hypothetical protein compare
Psest_3177 -1.4 -2.3 hypothetical protein compare
Psest_0999 -1.4 -3.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0575 -1.4 -1.1 HrpA-like helicases compare
Psest_4051 -1.4 -2.2 molybdenum-pterin binding domain compare
Psest_2414 -1.4 -2.4 TolR protein compare
Psest_3123 -1.3 -2.6 dihydroorotase, homodimeric type compare
Psest_0852 -1.3 -3.5 glucose-6-phosphate 1-dehydrogenase compare
Psest_3626 -1.3 -4.8 hypothetical protein compare
Psest_3637 -1.3 -4.8 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_2719 -1.3 -4.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1417 -1.3 -1.1 hypothetical protein compare
Psest_3047 -1.3 -1.2 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3146 -1.3 -2.4 hypothetical protein compare
Psest_3537 -1.3 -4.2 hypothetical protein compare
Psest_0310 -1.2 -2.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3456 -1.2 -0.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_1540 -1.2 -1.1 biotin-dependent carboxylase uncharacterized domain compare
Psest_1259 -1.1 -4.5 23S rRNA m2A2503 methyltransferase compare
Psest_0225 -1.1 -1.6 Predicted permease, DMT superfamily compare
Psest_4194 -1.1 -4.2 Type II secretory pathway, component PulM compare
Psest_0843 -1.1 -5.1 hypothetical protein compare
Psest_0281 -1.1 -5.5 Dynamin family. compare
Psest_3890 -1.1 -1.0 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0316 -1.1 -1.7 Cytochrome c556 compare
Psest_3178 -1.1 -2.9 formyltetrahydrofolate deformylase compare
Psest_0207 -1.1 -1.6 hypothetical protein compare
Psest_4054 -1.1 -2.2 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_1563 -1.0 -1.8 Protein of unknown function (DUF548). compare
Psest_1814 -1.0 -7.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2232 -1.0 -7.0 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_4145 -1.0 -1.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_3496 -1.0 -0.8 Predicted metal-binding protein compare
Psest_2923 -1.0 -1.5 hypothetical protein compare
Psest_0054 -1.0 -2.2 hypothetical protein compare
Psest_0359 -1.0 -1.9 Transcriptional regulators compare
Psest_0119 -1.0 -1.2 hypothetical protein compare
Psest_1242 -1.0 -2.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1447 -1.0 -2.4 Putative threonine efflux protein compare
Psest_1473 -1.0 -4.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3878 -1.0 -2.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4049 -1.0 -1.4 hypothetical protein compare
Psest_3767 -0.9 -2.1 tyrosine recombinase XerC compare
Psest_2088 -0.9 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3183 -0.9 -3.9 hypothetical protein compare
Psest_1486 -0.9 -1.6 hypothetical protein compare
Psest_0489 -0.9 -1.9 phosphoserine phosphatase SerB compare
Psest_3174 -0.9 -7.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0402 -0.9 -1.2 glycosyltransferase, MGT family compare
Psest_2764 -0.9 -1.0 hypothetical protein compare
Psest_1008 -0.9 -1.2 hypothetical protein compare
Psest_3995 -0.9 -1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1282 -0.9 -1.7 Amidases related to nicotinamidase compare
Psest_1053 -0.9 -1.2 hypothetical protein compare
Psest_1595 -0.9 -1.1 Copper chaperone compare
Psest_2293 -0.9 -1.6 hypothetical protein compare
Psest_2537 -0.9 -4.9 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3185 -0.9 -1.6 MoxR-like ATPases compare
Psest_2809 -0.9 -1.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1506 -0.9 -3.2 queuosine biosynthesis protein QueC compare
Psest_4209 -0.9 -1.7 Uncharacterized conserved small protein compare
Psest_2907 -0.9 -1.3 Protein of unknown function (DUF3618). compare
Psest_3745 -0.9 -2.0 Uncharacterized enzyme of heme biosynthesis compare
Psest_2855 -0.9 -0.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0440 -0.9 -2.2 hypothetical protein compare
Psest_0161 -0.9 -1.7 Membrane-bound metallopeptidase compare
Psest_3184 -0.8 -3.0 hypothetical protein compare
Psest_0691 -0.8 -5.8 ribonuclease R compare
Psest_0061 -0.8 -1.2 hypothetical protein compare
Psest_0442 -0.8 -4.4 ATPases of the AAA+ class compare
Psest_3361 -0.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2018 -0.8 -2.4 Uncharacterized conserved protein compare
Psest_1510 -0.8 -2.6 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4151 -0.8 -1.8 Flagellar hook capping protein compare
Psest_4267 -0.8 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1457 -0.8 -1.7 FOG: Ankyrin repeat compare
Psest_4301 -0.8 -2.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3550 -0.8 -1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_4109 -0.8 -2.0 selenocysteine-specific elongation factor SelB compare
Psest_0516 -0.8 -4.8 D-alanyl-D-alanine carboxypeptidase compare
Psest_3766 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1505 -0.8 -1.5 Organic radical activating enzymes compare
Psest_3143 -0.8 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_2265 -0.8 -2.7 Outer membrane protein compare
Psest_3180 -0.8 -4.4 Exonuclease I compare
Psest_0021 -0.8 -2.4 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_1876 -0.8 -1.5 Predicted membrane protein compare
Psest_1525 -0.8 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1163 -0.8 -2.2 diguanylate cyclase (GGDEF) domain compare
Psest_4044 -0.8 -3.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1837 -0.8 -3.8 Endoglucanase compare
Psest_4315 -0.8 -1.0 ABC-type metal ion transport system, permease component compare
Psest_2091 -0.8 -2.3 Molecular chaperone (small heat shock protein) compare
Psest_3839 -0.8 -1.6 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_1421 -0.7 -1.0 Glutathione S-transferase compare
Psest_3148 -0.7 -1.2 hypothetical protein compare
Psest_2454 -0.7 -1.6 Rhodanese-related sulfurtransferase compare
Psest_3555 -0.7 -1.2 Predicted methyltransferase compare
Psest_1065 -0.7 -1.3 hypothetical protein compare
Psest_2092 -0.7 -2.2 hypothetical protein compare
Psest_0091 -0.7 -1.9 phosphonate C-P lyase system protein PhnL compare
Psest_2621 -0.7 -1.6 TadE-like protein. compare
Psest_3151 -0.7 -2.0 hypothetical protein compare
Psest_2590 -0.7 -1.1 3-isopropylmalate dehydratase, small subunit compare
Psest_3780 -0.7 -1.6 Transcriptional regulator compare
Psest_2757 -0.7 -1.0 hypothetical protein compare
Psest_3743 -0.7 -1.5 Regulator of sigma D compare
Psest_2096 -0.7 -1.7 Domain of unknown function (DUF1883). compare
Psest_1601 -0.7 -0.6 Signal transduction histidine kinase compare
Psest_1463 -0.7 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_4170 -0.7 -0.8 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1907 -0.7 -0.6 hypothetical protein compare
Psest_2933 -0.7 -4.5 Signal transduction histidine kinase compare
Psest_2580 -0.7 -1.9 Uncharacterized membrane protein, required for colicin V production compare
Psest_0501 -0.7 -1.2 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_3187 -0.7 -2.7 hypothetical protein compare
Psest_0277 -0.7 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0078 -0.7 -0.6 hypothetical protein compare
Psest_1813 -0.7 -4.3 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0259 -0.7 -1.0 cell division ATP-binding protein FtsE compare
Psest_0845 -0.7 -0.4 hypothetical protein compare
Psest_2278 -0.7 -2.2 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0292 -0.7 -2.0 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2154 -0.7 -2.6 formate dehydrogenase accessory protein FdhE compare
Psest_2618 -0.7 -2.0 Flp pilus assembly protein TadB compare
Psest_3894 -0.7 -1.9 Carbon starvation protein, predicted membrane protein compare
Psest_2863 -0.7 -3.6 Transcriptional regulator compare
Psest_0260 -0.6 -1.0 Cell division protein compare
Psest_4172 -0.6 -1.9 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_0795 -0.6 -1.5 ABC-type multidrug transport system, ATPase component compare
Psest_3721 -0.6 -3.0 Malic enzyme compare
Psest_0237 -0.6 -1.5 intracellular protease, PfpI family compare
Psest_1327 -0.6 -4.4 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_1498 -0.6 -1.5 tol-pal system-associated acyl-CoA thioesterase compare
Psest_3662 -0.6 -1.3 DnaJ-domain-containing proteins 1 compare
Psest_4100 -0.6 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2240 -0.6 -1.3 hypothetical protein compare
Psest_1681 -0.6 -2.3 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_1994 -0.6 -1.9 Amidases related to nicotinamidase compare
Psest_0902 -0.6 -2.2 Predicted transcriptional regulators compare
Psest_1056 -0.6 -0.9 2-isopropylmalate synthase, bacterial type compare
Psest_2976 -0.6 -1.3 hypothetical protein compare
Psest_0953 -0.6 -3.6 iron-sulfur cluster-binding protein compare
Psest_2308 -0.6 -1.1 Predicted Fe-S protein compare
Psest_4305 -0.6 -2.2 NAD-dependent aldehyde dehydrogenases compare
Psest_4106 -0.6 -1.6 formate dehydrogenase, gamma subunit compare
Psest_0718 -0.6 -2.4 nicotinate-nucleotide pyrophosphorylase compare
Psest_1998 -0.6 -2.8 Entner-Doudoroff aldolase compare
Psest_3979 -0.6 -1.2 Fructose-2,6-bisphosphatase compare
Psest_3419 -0.6 -3.3 Predicted transcriptional regulators compare
Psest_1111 -0.6 -1.3 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0842 -0.6 -1.2 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_0678 -0.6 -0.9 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_1249 -0.6 -3.0 serine O-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in temperature experiments