Experiment set5H27 for Pseudomonas stutzeri RCH2

Compare to:

LB 26C sample1

200 most important genes:

  gene name fitness t score description  
Psest_2872 -4.3 -3.0 protein RecA compare
Psest_1492 -4.0 -9.6 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2944 -4.0 -6.8 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_1947 -3.7 -2.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2067 -3.7 -2.5 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0537 -3.4 -2.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_1496 -3.2 -3.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_2946 -2.9 -7.2 septum site-determining protein MinD compare
Psest_4044 -2.9 -9.8 type I site-specific deoxyribonuclease, HsdR family compare
Psest_4219 -2.9 -2.0 DNA polymerase I compare
Psest_2285 -2.8 -7.1 ATP-dependent protease La compare
Psest_0558 -2.7 -1.1 urease, beta subunit compare
Psest_1013 -2.7 -4.7 phosphoribosylamine--glycine ligase compare
Psest_3810 -2.5 -4.4 orotate phosphoribosyltransferase compare
Psest_3784 -2.4 -2.3 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3476 -2.4 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4142 -2.3 -2.0 hypothetical protein compare
Psest_0846 -2.2 -2.6 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2581 -2.2 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_1012 -2.1 -5.7 Signal transduction histidine kinase compare
Psest_1804 -2.1 -3.8 Superfamily II DNA and RNA helicases compare
Psest_3780 -2.1 -2.4 Transcriptional regulator compare
Psest_0259 -2.0 -2.3 cell division ATP-binding protein FtsE compare
Psest_0030 -2.0 -2.6 Putative NADH-flavin reductase compare
Psest_3908 -1.9 -1.0 Cytochrome c553 compare
Psest_3123 -1.9 -4.1 dihydroorotase, homodimeric type compare
Psest_3148 -1.9 -2.2 hypothetical protein compare
Psest_0161 -1.8 -2.6 Membrane-bound metallopeptidase compare
Psest_3960 -1.7 -2.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3766 -1.7 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1204 -1.7 -2.4 Transcriptional regulators compare
Psest_4051 -1.6 -3.3 molybdenum-pterin binding domain compare
Psest_2358 -1.6 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0442 -1.6 -6.3 ATPases of the AAA+ class compare
Psest_0498 -1.6 -2.0 ribosome small subunit-dependent GTPase A compare
Psest_3092 -1.6 -2.3 ribonuclease III, bacterial compare
Psest_3013 -1.6 -1.4 cobyrinic acid a,c-diamide synthase compare
Psest_3185 -1.5 -2.3 MoxR-like ATPases compare
Psest_4078 -1.5 -1.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0067 -1.5 -3.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_2764 -1.5 -0.9 hypothetical protein compare
Psest_4170 -1.5 -1.6 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3937 -1.5 -1.9 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0257 -1.4 -3.9 Predicted Zn-dependent peptidases compare
Psest_2566 -1.4 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0094 -1.4 -1.6 Uncharacterized enzyme of phosphonate metabolism compare
Psest_2945 -1.4 -2.5 septum site-determining protein MinC compare
Psest_3159 -1.4 -5.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3904 -1.4 -0.7 hypothetical protein compare
Psest_1474 -1.4 -4.9 phosphoribosylaminoimidazole synthetase compare
Psest_0077 -1.4 -2.9 luciferase family oxidoreductase, group 1 compare
Psest_0844 -1.4 -2.2 High-affinity Fe2+/Pb2+ permease compare
Psest_4098 -1.4 -3.0 Superfamily I DNA and RNA helicases compare
Psest_3777 -1.3 -2.5 diguanylate cyclase (GGDEF) domain compare
Psest_0489 -1.3 -3.1 phosphoserine phosphatase SerB compare
Psest_4163 -1.3 -2.0 hypothetical protein compare
Psest_1657 -1.3 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0845 -1.3 -0.7 hypothetical protein compare
Psest_2579 -1.3 -5.9 amidophosphoribosyltransferase compare
Psest_1792 -1.3 -2.6 RND family efflux transporter, MFP subunit compare
Psest_0857 -1.3 -0.8 Membrane transporters of cations and cationic drugs compare
Psest_3338 -1.3 -1.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1144 -1.2 -3.7 AmpG-related permease compare
Psest_3767 -1.2 -2.5 tyrosine recombinase XerC compare
Psest_3197 -1.2 -3.2 hypothetical protein compare
Psest_3745 -1.2 -2.4 Uncharacterized enzyme of heme biosynthesis compare
Psest_0691 -1.2 -8.2 ribonuclease R compare
Psest_0867 -1.2 -1.3 hypothetical protein compare
Psest_0725 -1.2 -2.0 Negative regulator of beta-lactamase expression compare
Psest_3351 -1.2 -4.4 peptide chain release factor 3 compare
Psest_0511 -1.1 -0.9 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0843 -1.1 -5.1 hypothetical protein compare
Psest_1999 -1.1 -2.0 pseudouridine synthase compare
Psest_4220 -1.1 -1.8 Protein of unknown function (DUF2782). compare
Psest_3921 -1.1 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_1392 -1.1 -2.4 ABC-type uncharacterized transport systems, ATPase components compare
Psest_3536 -1.1 -1.0 hypothetical protein compare
Psest_0632 -1.1 -2.4 hypothetical protein compare
Psest_0277 -1.0 -1.6 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1819 -1.0 -8.8 Nucleoside-diphosphate-sugar epimerases compare
Psest_1837 -1.0 -5.8 Endoglucanase compare
Psest_0575 -1.0 -0.9 HrpA-like helicases compare
Psest_4132 -1.0 -1.9 alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) compare
Psest_1056 -1.0 -1.3 2-isopropylmalate synthase, bacterial type compare
Psest_3913 -1.0 -1.9 hypothetical protein compare
Psest_3008 -1.0 -1.6 cobyric acid synthase CobQ compare
Psest_3554 -1.0 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2591 -1.0 -3.4 3-isopropylmalate dehydratase, large subunit compare
Psest_4191 -1.0 -1.9 Transcriptional regulator compare
Psest_3458 -0.9 -1.1 hypothetical protein compare
Psest_2122 -0.9 -1.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2092 -0.9 -2.7 hypothetical protein compare
Psest_0260 -0.9 -1.8 Cell division protein compare
Psest_3031 -0.9 -0.9 hypothetical protein compare
Psest_0149 -0.9 -2.9 nitrate ABC transporter, permease protein compare
Psest_0998 -0.9 -2.9 poly(A) polymerase compare
Psest_0346 -0.9 -1.1 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_2293 -0.9 -1.6 hypothetical protein compare
Psest_3626 -0.9 -3.7 hypothetical protein compare
Psest_1382 -0.9 -2.3 Transcription elongation factor compare
Psest_2119 -0.9 -1.7 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1295 -0.9 -4.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1473 -0.9 -4.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0484 -0.9 -2.5 hypothetical protein compare
Psest_0515 -0.9 -2.0 rare lipoprotein A compare
Psest_2809 -0.9 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0031 -0.9 -0.8 Uncharacterized conserved protein compare
Psest_2748 -0.9 -1.8 Transcriptional regulator compare
Psest_1762 -0.9 -1.5 cytochrome c-type biogenesis protein CcmI compare
Psest_0164 -0.9 -0.6 Glutaredoxin, GrxC family compare
Psest_3180 -0.9 -4.8 Exonuclease I compare
Psest_0771 -0.8 -5.4 Acyl-CoA hydrolase compare
Psest_1111 -0.8 -2.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_4172 -0.8 -2.1 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_1772 -0.8 -2.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3893 -0.8 -2.1 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1486 -0.8 -1.8 hypothetical protein compare
Psest_0357 -0.8 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0410 -0.8 -1.9 Predicted amidophosphoribosyltransferases compare
Psest_0740 -0.8 -1.4 Transcriptional regulator compare
Psest_1921 -0.8 -2.1 Protein of unknown function (DUF2797). compare
Psest_2651 -0.8 -2.1 DNA topoisomerase I, bacterial compare
Psest_0532 -0.8 -2.8 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB compare
Psest_3881 -0.8 -0.9 hypothetical protein compare
Psest_3247 -0.8 -1.8 Uncharacterized membrane protein compare
Psest_2239 -0.8 -2.4 RES domain. compare
Psest_0650 -0.8 -1.7 RNA polymerase sigma factor, sigma-70 family compare
Psest_1447 -0.8 -1.9 Putative threonine efflux protein compare
Psest_2232 -0.8 -5.1 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3174 -0.8 -6.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0520 -0.7 -0.8 hypothetical protein compare
Psest_0644 -0.7 -1.2 siderophore ferric iron reductase, AHA_1954 family compare
Psest_4126 -0.7 -1.4 Predicted peroxiredoxins compare
Psest_1505 -0.7 -1.0 Organic radical activating enzymes compare
Psest_1431 -0.7 -2.4 hypothetical protein compare
Psest_0749 -0.7 -2.2 Transcriptional regulator compare
Psest_0503 -0.7 -0.7 Acyl dehydratase compare
Psest_1421 -0.7 -1.0 Glutathione S-transferase compare
Psest_0372 -0.7 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_0987 -0.7 -1.0 Predicted periplasmic or secreted lipoprotein compare
Psest_0999 -0.7 -2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1029 -0.7 -1.5 Regulator of competence-specific genes compare
Psest_2243 -0.7 -0.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0313 -0.7 -2.3 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3502 -0.7 -1.2 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_1560 -0.7 -2.0 hypothetical protein compare
Psest_1457 -0.7 -0.9 FOG: Ankyrin repeat compare
Psest_2714 -0.7 -1.1 7-cyano-7-deazaguanine reductase compare
Psest_2419 -0.7 -1.9 AraC-type DNA-binding domain-containing proteins compare
Psest_3357 -0.7 -1.6 Predicted pyrophosphatase compare
Psest_4088 -0.7 -1.6 Transcriptional regulators compare
Psest_3230 -0.7 -3.0 Uncharacterized conserved protein compare
Psest_1073 -0.7 -2.2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_2093 -0.7 -3.3 Leucine Rich Repeat./Protein kinase domain. compare
Psest_3462 -0.7 -1.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0708 -0.7 -1.4 outer membrane assembly lipoprotein YfiO compare
Psest_0147 -0.7 -2.6 Acetyltransferase, GNAT family. compare
Psest_3743 -0.7 -1.8 Regulator of sigma D compare
Psest_0853 -0.7 -1.5 6-phosphogluconolactonase compare
Psest_1544 -0.7 -3.1 single-stranded-DNA-specific exonuclease RecJ compare
Psest_3231 -0.7 -1.3 hypothetical protein compare
Psest_2150 -0.7 -1.1 DNA polymerase LigD, polymerase domain compare
Psest_2343 -0.7 -1.3 Mg-dependent DNase compare
Psest_1451 -0.7 -1.1 Uncharacterized ABC-type transport system, permease components compare
Psest_0814 -0.7 -1.0 MoxR-like ATPases compare
Psest_3002 -0.7 -0.9 Putative translation initiation inhibitor, yjgF family compare
Psest_3934 -0.7 -1.7 rRNA methylase, putative, group 2 compare
Psest_0281 -0.7 -2.9 Dynamin family. compare
Psest_1886 -0.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_2123 -0.7 -0.8 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_4255 -0.7 -2.2 conserved hypothetical integral membrane protein compare
Psest_1809 -0.6 -4.1 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3189 -0.6 -1.7 hypothetical protein compare
Psest_3662 -0.6 -1.3 DnaJ-domain-containing proteins 1 compare
Psest_2852 -0.6 -1.8 Outer membrane lipoprotein compare
Psest_2749 -0.6 -3.1 Predicted transcriptional regulators compare
Psest_2918 -0.6 -1.4 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
Psest_1167 -0.6 -0.8 hypothetical protein compare
Psest_1510 -0.6 -2.6 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1884 -0.6 -0.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1115 -0.6 -1.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1166 -0.6 -1.3 transcriptional regulator, ArgP family compare
Psest_2290 -0.6 -2.6 MoxR-like ATPases compare
Psest_1184 -0.6 -1.0 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1763 -0.6 -1.7 hypothetical protein compare
Psest_1907 -0.6 -0.6 hypothetical protein compare
Psest_3969 -0.6 -3.4 3-hydroxyacyl-CoA dehydrogenase compare
Psest_4146 -0.6 -1.7 Flagellar basal-body P-ring protein compare
Psest_1899 -0.6 -1.8 ABC-type sugar transport systems, ATPase components compare
Psest_4309 -0.6 -1.7 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_3045 -0.6 -1.2 Cold shock proteins compare
Psest_2810 -0.6 -2.8 5'/3'-nucleotidase SurE compare
Psest_1136 -0.6 -2.1 Prolyl oligopeptidase family. compare
Psest_4316 -0.6 -1.3 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_2363 -0.6 -2.2 hypothetical protein compare
Psest_3927 -0.6 -1.9 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3862 -0.6 -3.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3860 -0.6 -1.5 Predicted permeases compare
Psest_1327 -0.6 -3.6 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_0781 -0.6 -2.9 phenylalanine-4-hydroxylase, monomeric form compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in temperature experiments