Experiment set5H2 for Pseudomonas stutzeri RCH2

Compare to:

LB with Benzalkonium Chloride 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_2712 -5.0 -7.7 Surface lipoprotein compare
Psest_1496 -4.9 -3.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_1154 -4.7 -7.2 RND family efflux transporter, MFP subunit conserved
Psest_3306 -4.6 -5.4 conserved hypothetical integral membrane protein compare
Psest_3305 -4.5 -8.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1510 -4.5 -3.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0309 -4.5 -2.7 RND family efflux transporter, MFP subunit compare
Psest_3129 -4.3 -3.0 tyrosine recombinase XerD compare
Psest_3304 -4.2 -5.7 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3303 -4.0 -7.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1153 -3.9 -22.3 Cation/multidrug efflux pump compare
Psest_0466 -3.8 -3.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2011 -3.7 -10.0 Predicted permease compare
Psest_2581 -3.7 -5.0 Uncharacterized protein conserved in bacteria compare
Psest_3307 -3.6 -9.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3883 -3.5 -5.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1505 -3.5 -4.5 Organic radical activating enzymes compare
Psest_0498 -3.4 -2.1 ribosome small subunit-dependent GTPase A compare
Psest_0062 -3.4 -6.5 tryptophan synthase, alpha subunit compare
Psest_0359 -3.3 -3.0 Transcriptional regulators compare
Psest_0476 -3.3 -9.7 type I secretion outer membrane protein, TolC family conserved
Psest_1814 -3.1 -20.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2025 -3.0 -2.2 cold shock domain protein CspD compare
Psest_2358 -3.0 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0542 -3.0 -5.0 AMP nucleosidase compare
Psest_0457 -3.0 -4.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0063 -3.0 -2.9 tryptophan synthase, beta subunit compare
Psest_3455 -2.9 -3.3 Dihaem cytochrome c. compare
Psest_1724 -2.8 -4.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4078 -2.7 -2.5 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2946 -2.7 -7.1 septum site-determining protein MinD compare
Psest_0193 -2.6 -1.3 conserved hypothetical protein compare
Psest_1884 -2.6 -2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2945 -2.6 -2.6 septum site-determining protein MinC compare
Psest_0310 -2.6 -3.0 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0393 -2.5 -6.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3339 -2.4 -6.6 Signal transduction histidine kinase compare
Psest_0998 -2.4 -4.2 poly(A) polymerase compare
Psest_3810 -2.3 -3.8 orotate phosphoribosyltransferase compare
Psest_1472 -2.3 -7.8 Protein of unknown function (DUF3108). compare
Psest_3338 -2.3 -2.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0691 -2.2 -11.7 ribonuclease R compare
Psest_0719 -2.1 -6.0 Uncharacterized protein conserved in bacteria compare
Psest_1871 -2.1 -9.0 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_3732 -2.1 -8.4 polyphosphate kinase 1 compare
Psest_2708 -2.0 -10.8 transaldolase compare
Psest_2935 -2.0 -2.0 hypothetical protein compare
Psest_1143 -1.9 -6.6 Small-conductance mechanosensitive channel compare
Psest_3228 -1.9 -9.0 Zn-dependent protease with chaperone function compare
Psest_3648 -1.9 -8.5 anthranilate phosphoribosyltransferase compare
Psest_0181 -1.9 -6.4 glycine cleavage system T protein compare
Psest_0482 -1.8 -5.2 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_3024 -1.8 -6.0 cytochrome d oxidase, subunit II (cydB) compare
Psest_3647 -1.8 -8.1 Indole-3-glycerol phosphate synthase compare
Psest_0737 -1.8 -0.8 Cu(I)-responsive transcriptional regulator compare
Psest_0485 -1.8 -2.9 clan AA aspartic protease, TIGR02281 family compare
Psest_2584 -1.8 -4.7 Phosphoribosylanthranilate isomerase compare
Psest_3990 -1.8 -4.6 PAP2 superfamily. compare
Psest_1506 -1.7 -4.8 queuosine biosynthesis protein QueC compare
Psest_3092 -1.7 -2.0 ribonuclease III, bacterial compare
Psest_2304 -1.7 -2.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_4345 -1.6 -7.5 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1663 -1.6 -2.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3070 -1.6 -2.7 3-oxoadipyl-CoA thiolase compare
Psest_4222 -1.6 -8.4 Predicted Rossmann fold nucleotide-binding protein compare
Psest_3383 -1.6 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_1031 -1.5 -7.4 Uncharacterized protein conserved in bacteria compare
Psest_3944 -1.5 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_4371 -1.5 -3.7 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_4298 -1.5 -0.7 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1226 -1.5 -2.4 hypothetical protein compare
Psest_1625 -1.5 -3.4 hypothetical protein compare
Psest_2646 -1.5 -2.4 SOS regulatory protein LexA compare
Psest_2067 -1.4 -1.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3118 -1.4 -8.0 endonuclease III compare
Psest_1975 -1.4 -5.0 Predicted transcriptional regulators compare
Psest_2517 -1.4 -3.2 hypothetical protein compare
Psest_2997 -1.4 -7.9 Long-chain fatty acid transport protein compare
Psest_3767 -1.4 -1.3 tyrosine recombinase XerC compare
Psest_0133 -1.4 -1.7 type VI secretion protein, VC_A0107 family compare
Psest_1451 -1.4 -1.8 Uncharacterized ABC-type transport system, permease components compare
Psest_2714 -1.4 -2.4 7-cyano-7-deazaguanine reductase compare
Psest_1642 -1.4 -4.2 Uncharacterized protein conserved in bacteria compare
Psest_4243 -1.4 -1.6 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0741 -1.4 -4.6 drug resistance transporter, Bcr/CflA subfamily compare
Psest_1563 -1.4 -2.1 Protein of unknown function (DUF548). compare
Psest_2872 -1.3 -1.5 protein RecA compare
Psest_3650 -1.3 -8.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0515 -1.3 -3.6 rare lipoprotein A compare
Psest_2442 -1.3 -1.8 hypothetical protein compare
Psest_0189 -1.3 -4.1 Negative regulator of beta-lactamase expression compare
Psest_0260 -1.3 -1.7 Cell division protein compare
Psest_0958 -1.3 -7.8 Oligoketide cyclase/lipid transport protein compare
Psest_3071 -1.3 -5.8 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit compare
Psest_1879 -1.3 -2.4 Trk-type K+ transport systems, membrane components compare
Psest_4088 -1.3 -2.9 Transcriptional regulators compare
Psest_3929 -1.2 -4.2 hypothetical protein conserved
Psest_0212 -1.2 -0.8 exodeoxyribonuclease V, gamma subunit compare
Psest_3731 -1.2 -8.2 exopolyphosphatase compare
Psest_0186 -1.2 -3.3 Protein-disulfide isomerase compare
Psest_3022 -1.2 -3.0 Predicted membrane protein compare
Psest_3519 -1.2 -1.6 Uncharacterized conserved protein compare
Psest_3510 -1.2 -5.7 Na+-dependent transporters of the SNF family compare
Psest_0172 -1.2 -5.6 Uncharacterized protein conserved in bacteria compare
Psest_0844 -1.2 -3.0 High-affinity Fe2+/Pb2+ permease compare
Psest_2339 -1.2 -3.6 transcription elongation factor GreB compare
Psest_3535 -1.2 -2.5 hypothetical protein compare
Psest_1700 -1.2 -2.7 Transcriptional regulator compare
Psest_3025 -1.1 -7.6 Cytochrome bd-type quinol oxidase, subunit 1 compare
Psest_1640 -1.1 -7.2 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3777 -1.1 -1.8 diguanylate cyclase (GGDEF) domain compare
Psest_4370 -1.1 -2.4 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2981 -1.1 -1.6 sodium pump decarboxylases, gamma subunit compare
Psest_0277 -1.1 -1.4 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2632 -1.1 -4.0 ribosomal protein S12 methylthiotransferase RimO compare
Psest_1488 -1.1 -8.8 outer membrane porin, OprD family. compare
Psest_1904 -1.1 -2.5 Arabinose efflux permease compare
Psest_3820 -1.1 -5.2 Uncharacterized protein conserved in bacteria compare
Psest_2809 -1.1 -2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_4219 -1.1 -0.7 DNA polymerase I compare
Psest_2285 -1.1 -4.4 ATP-dependent protease La compare
Psest_1877 -1.1 -1.9 AraC-type DNA-binding domain-containing proteins compare
Psest_1163 -1.1 -3.2 diguanylate cyclase (GGDEF) domain compare
Psest_0279 -1.1 -3.8 methionine biosynthesis protein MetW compare
Psest_1905 -1.1 -1.2 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_0177 -1.1 -6.4 hypothetical protein compare
Psest_1679 -1.0 -1.0 ribonuclease, Rne/Rng family compare
Psest_1614 -1.0 -3.3 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component compare
Psest_3816 -1.0 -0.7 DNA-directed RNA polymerase, omega subunit compare
Psest_2238 -1.0 -2.1 hypothetical protein compare
Psest_0531 -1.0 -4.4 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Psest_3536 -1.0 -1.1 hypothetical protein compare
Psest_0442 -1.0 -4.6 ATPases of the AAA+ class compare
Psest_3626 -1.0 -4.6 hypothetical protein compare
Psest_4396 -1.0 -6.2 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3908 -1.0 -0.7 Cytochrome c553 compare
Psest_1671 -1.0 -3.2 DNA internalization-related competence protein ComEC/Rec2 compare
Psest_1627 -1.0 -5.2 Superfamily II DNA and RNA helicases compare
Psest_3008 -1.0 -1.8 cobyric acid synthase CobQ compare
Psest_2810 -1.0 -3.4 5'/3'-nucleotidase SurE compare
Psest_3072 -1.0 -3.0 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit compare
Psest_1957 -1.0 -6.4 outer membrane porin, OprD family. compare
Psest_2624 -1.0 -1.6 hypothetical protein compare
Psest_1524 -1.0 -3.0 Sel1 repeat. compare
Psest_0278 -1.0 -5.3 hypothetical protein compare
Psest_0145 -1.0 -3.3 A/G-specific adenine glycosylase compare
Psest_3015 -1.0 -3.4 hypothetical protein compare
Psest_3244 -1.0 -2.9 Protein of unknown function (DUF2726). compare
Psest_3882 -1.0 -5.2 Opacity protein and related surface antigens compare
Psest_2618 -1.0 -2.8 Flp pilus assembly protein TadB compare
Psest_1613 -1.0 -2.1 hypothetical protein compare
Psest_2850 -1.0 -1.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0962 -1.0 -6.1 DNA repair protein RecN compare
Psest_3884 -1.0 -0.5 Signal transduction histidine kinase compare
Psest_3678 -0.9 -3.4 acyl-phosphate glycerol 3-phosphate acyltransferase compare
Psest_2864 -0.9 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4170 -0.9 -0.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2803 -0.9 -5.8 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_0298 -0.9 -3.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0459 -0.9 -5.5 Predicted carbamoyl transferase, NodU family compare
Psest_1920 -0.9 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3564 -0.9 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_3649 -0.9 -4.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1791 -0.9 -2.8 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_0707 -0.9 -4.5 MYND finger. compare
Psest_1812 -0.9 -3.6 pseudaminic acid CMP-transferase compare
Psest_0455 -0.9 -4.7 ADP-heptose:LPS heptosyltransferase compare
Psest_1567 -0.9 -1.9 Transcriptional regulator compare
Psest_3721 -0.9 -4.0 Malic enzyme compare
Psest_3926 -0.9 -5.9 GTP-binding protein TypA/BipA compare
Psest_0401 -0.9 -0.7 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0801 -0.9 -3.8 CBS-domain-containing membrane protein compare
Psest_2266 -0.9 -1.8 hypothetical protein compare
Psest_2046 -0.9 -2.8 hypothetical protein compare
Psest_2265 -0.9 -3.4 Outer membrane protein compare
Psest_3937 -0.9 -0.8 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0147 -0.9 -2.5 Acetyltransferase, GNAT family. compare
Psest_4283 -0.9 -5.3 Spermidine/putrescine-binding periplasmic protein compare
Psest_2044 -0.9 -2.3 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_1939 -0.9 -2.5 Tetratricopeptide repeat. compare
Psest_2132 -0.9 -6.5 Outer membrane protein compare
Psest_1919 -0.9 -1.8 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_3189 -0.9 -2.3 hypothetical protein compare
Psest_0311 -0.9 -2.7 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0872 -0.9 -0.9 Helix-turn-helix. compare
Psest_1813 -0.9 -5.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0161 -0.9 -1.3 Membrane-bound metallopeptidase compare
Psest_3322 -0.9 -6.3 TIGR02099 family protein compare
Psest_1943 -0.8 -4.3 MoxR-like ATPases compare
Psest_3146 -0.8 -1.4 hypothetical protein compare
Psest_0346 -0.8 -2.0 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_3717 -0.8 -3.9 Tfp pilus assembly protein PilO compare
Psest_4148 -0.8 -2.1 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Psest_2855 -0.8 -1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0511 -0.8 -0.7 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3145 -0.8 -1.7 hypothetical protein compare
Psest_4290 -0.8 -3.9 N-carbamoylputrescine amidase compare
Psest_0440 -0.8 -2.7 hypothetical protein compare
Psest_1217 -0.8 -3.3 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein conserved
Psest_2248 -0.8 -1.8 Predicted transcriptional regulators compare


Specific Phenotypes

For 16 genes in this experiment

For stress Benzalkonium Chloride in Pseudomonas stutzeri RCH2

For stress Benzalkonium Chloride across organisms