Experiment set5H2 for Pseudomonas stutzeri RCH2

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LB with Benzalkonium Chloride 0.002 mg/ml

Group: stress
Media: LB + Benzalkonium Chloride (0.002 mg/ml)
Culturing: psRCH2_ML7, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Adam on 6/28/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 562 D5,D6

Specific Phenotypes

For 16 genes in this experiment

For stress Benzalkonium Chloride in Pseudomonas stutzeri RCH2

For stress Benzalkonium Chloride across organisms

SEED Subsystems

Subsystem #Specific
Terminal cytochrome d ubiquinol oxidases 2
Terminal cytochrome oxidases 2
Arginine Deiminase Pathway 1
Arginine and Ornithine Degradation 1
Bacterial RNA-metabolizing Zn-dependent hydrolases 1
Cobalt-zinc-cadmium resistance 1
Coenzyme B12 biosynthesis 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
Control of cell elongation - division cycle in Bacilli 1
DNA Repair Base Excision 1
Multidrug Resistance Efflux Pumps 1
Polyamine Metabolism 1
Ton and Tol transport systems 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
adenosine nucleotides degradation III 1 1 1
succinate to cytochrome bd oxidase electron transfer 2 2 1
NADH to cytochrome bd oxidase electron transfer II 2 2 1
3-oxoadipate degradation 2 2 1
NADH to cytochrome bd oxidase electron transfer I 2 2 1
pyruvate to cytochrome bd oxidase electron transfer 2 1 1
catechol degradation III (ortho-cleavage pathway) 6 6 1
superpathway of salicylate degradation 7 6 1
4-methylcatechol degradation (ortho cleavage) 7 5 1
L-glutamate degradation XI (reductive Stickland reaction) 7 4 1
aromatic compounds degradation via β-ketoadipate 9 7 1
L-glutamate degradation V (via hydroxyglutarate) 10 7 1
toluene degradation III (aerobic) (via p-cresol) 11 4 1
mandelate degradation to acetyl-CoA 18 9 1
superpathway of aerobic toluene degradation 30 7 1
superpathway of aromatic compound degradation via 3-oxoadipate 35 11 1