Experiment set5H19 for Pseudomonas stutzeri RCH2

Compare to:

Glucose defined media

200 most important genes:

  gene name fitness t score description  
Psest_3648 -6.2 -4.3 anthranilate phosphoribosyltransferase compare
Psest_3647 -6.2 -7.3 Indole-3-glycerol phosphate synthase compare
Psest_2590 -6.1 -3.0 3-isopropylmalate dehydratase, small subunit compare
Psest_0279 -5.8 -5.7 methionine biosynthesis protein MetW compare
Psest_2591 -5.7 -5.5 3-isopropylmalate dehydratase, large subunit compare
Psest_1037 -5.5 -5.0 acetolactate synthase, small subunit compare
Psest_3650 -5.5 -11.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2584 -5.4 -9.0 Phosphoribosylanthranilate isomerase compare
Psest_3384 -5.4 -8.9 glutamate 5-kinase compare
Psest_3299 -5.2 -13.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2578 -5.2 -15.6 O-succinylhomoserine sulfhydrylase compare
Psest_0153 -5.1 -9.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3866 -5.0 -13.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3159 -5.0 -11.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1895 -5.0 -7.6 Signal transduction histidine kinase compare
Psest_1897 -5.0 -12.9 ABC-type sugar transport systems, permease components compare
Psest_0508 -5.0 -9.0 gamma-glutamyl phosphate reductase compare
Psest_0325 -5.0 -16.7 Putative threonine efflux protein compare
Psest_2579 -4.9 -3.4 amidophosphoribosyltransferase compare
Psest_1474 -4.9 -4.8 phosphoribosylaminoimidazole synthetase compare
Psest_1898 -4.9 -9.9 ABC-type sugar transport system, permease component compare
Psest_2589 -4.8 -16.5 3-isopropylmalate dehydrogenase compare
Psest_3298 -4.6 -11.8 histidinol dehydrogenase compare
Psest_0687 -4.5 -12.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1947 -4.4 -3.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0489 -4.4 -4.3 phosphoserine phosphatase SerB compare
Psest_0062 -4.4 -8.3 tryptophan synthase, alpha subunit compare
Psest_3864 -4.3 -16.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0152 -4.3 -5.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_0999 -4.3 -5.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0326 -4.2 -16.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3649 -4.2 -12.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1473 -4.2 -14.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1896 -4.2 -5.6 ABC-type sugar transport system, periplasmic component compare
Psest_0280 -4.0 -15.8 homoserine O-acetyltransferase compare
Psest_1772 -4.0 -9.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0155 -4.0 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3810 -4.0 -3.9 orotate phosphoribosyltransferase compare
Psest_1013 -3.9 -4.6 phosphoribosylamine--glycine ligase compare
Psest_1452 -3.8 -7.8 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0852 -3.8 -3.7 glucose-6-phosphate 1-dehydrogenase compare
Psest_1295 -3.8 -12.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3944 -3.7 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1704 -3.7 -4.3 Dehydrogenases (flavoproteins) compare
Psest_0855 -3.6 -2.4 NAD-dependent aldehyde dehydrogenases compare
Psest_3190 -3.5 -8.3 pyruvate kinase compare
Psest_0849 -3.5 -8.0 6-phosphogluconate dehydratase compare
Psest_3123 -3.4 -7.3 dihydroorotase, homodimeric type compare
Psest_0850 -3.2 -5.7 glucokinase, proteobacterial type compare
Psest_0313 -3.2 -4.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4088 -3.2 -4.7 Transcriptional regulators compare
Psest_1899 -3.0 -5.3 ABC-type sugar transport systems, ATPase components compare
Psest_2585 -2.9 -2.2 pseudouridylate synthase I compare
Psest_0063 -2.8 -6.3 tryptophan synthase, beta subunit compare
Psest_2988 -2.8 -12.2 aspartate kinase, monofunctional class compare
Psest_0958 -2.8 -12.7 Oligoketide cyclase/lipid transport protein compare
Psest_2945 -2.7 -4.3 septum site-determining protein MinC compare
Psest_2329 -2.7 -20.0 Transcriptional regulator compare
Psest_2719 -2.7 -8.6 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0853 -2.6 -3.4 6-phosphogluconolactonase compare
Psest_1805 -2.5 -4.5 integration host factor, beta subunit compare
Psest_3862 -2.4 -14.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0417 -2.4 -3.6 Acyl-CoA dehydrogenases compare
Psest_1994 -2.4 -7.8 Amidases related to nicotinamidase compare
Psest_1814 -2.3 -16.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3178 -2.3 -6.3 formyltetrahydrofolate deformylase compare
Psest_3818 -2.3 -7.8 endoribonuclease L-PSP, putative compare
Psest_3322 -2.3 -16.3 TIGR02099 family protein compare
Psest_3700 -2.3 -1.0 hypothetical protein compare
Psest_4085 -2.2 -13.9 Biotin carboxylase compare
Psest_0411 -2.2 -9.8 biotin synthetase compare
Psest_3943 -2.2 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
Psest_4084 -2.1 -14.8 oxaloacetate decarboxylase alpha subunit compare
Psest_1974 -2.1 -6.5 integration host factor, alpha subunit compare
Psest_1686 -2.1 -5.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1496 -2.0 -3.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_2104 -1.9 -4.7 IscR-regulated protein YhgI compare
Psest_2975 -1.9 -4.8 tRNA_Arg_CCT compare
Psest_0327 -1.9 -6.1 Transcriptional regulator compare
Psest_2944 -1.9 -8.6 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_3297 -1.9 -9.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0442 -1.8 -10.3 ATPases of the AAA+ class compare
Psest_3664 -1.8 -3.4 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2643 -1.8 -4.6 Beta-glucosidase-related glycosidases compare
Psest_1505 -1.8 -3.9 Organic radical activating enzymes compare
Psest_1012 -1.7 -6.2 Signal transduction histidine kinase compare
Psest_4086 -1.7 -8.0 Transcriptional regulator compare
Psest_0170 -1.6 -6.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_2532 -1.6 -5.5 Uncharacterized protein conserved in bacteria compare
Psest_3637 -1.6 -6.1 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_2775 -1.5 -4.2 Glycerol-3-phosphate dehydrogenase compare
Psest_3317 -1.5 -6.2 Phosphotransferase System HPr (HPr) Family compare
Psest_2809 -1.4 -3.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2527 -1.4 -8.5 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1498 -1.4 -4.3 tol-pal system-associated acyl-CoA thioesterase compare
Psest_0520 -1.4 -1.7 hypothetical protein compare
Psest_1242 -1.4 -3.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2872 -1.3 -2.8 protein RecA compare
Psest_0466 -1.3 -4.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3226 -1.3 -1.0 Predicted membrane protein compare
Psest_2088 -1.2 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2651 -1.2 -4.5 DNA topoisomerase I, bacterial compare
Psest_2946 -1.2 -4.9 septum site-determining protein MinD compare
Psest_0725 -1.2 -3.7 Negative regulator of beta-lactamase expression compare
Psest_0259 -1.2 -2.2 cell division ATP-binding protein FtsE compare
Psest_2967 -1.2 -2.7 flagellar basal-body rod protein FlgC compare
Psest_3998 -1.2 -4.1 glutamate--cysteine ligase compare
Psest_0969 -1.2 -3.9 transcription elongation factor GreA compare
Psest_1999 -1.2 -2.8 pseudouridine synthase compare
Psest_3626 -1.2 -5.5 hypothetical protein compare
Psest_2067 -1.2 -1.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0414 -1.2 -3.6 biotin biosynthesis protein BioC compare
Psest_2504 -1.2 -5.7 flagellar biosynthetic protein FliS compare
Psest_3816 -1.2 -1.4 DNA-directed RNA polymerase, omega subunit compare
Psest_1204 -1.2 -2.6 Transcriptional regulators compare
Psest_3031 -1.2 -1.5 hypothetical protein compare
Psest_0718 -1.2 -3.4 nicotinate-nucleotide pyrophosphorylase compare
Psest_3100 -1.2 -8.1 RNA polymerase sigma factor RpoE compare
Psest_1230 -1.2 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_1804 -1.2 -4.0 Superfamily II DNA and RNA helicases compare
Psest_4191 -1.2 -2.1 Transcriptional regulator compare
Psest_2810 -1.2 -4.8 5'/3'-nucleotidase SurE compare
Psest_0692 -1.2 -3.2 rRNA methylase, putative, group 3 compare
Psest_4100 -1.1 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_2405 -1.1 -2.7 NAD-dependent protein deacetylases, SIR2 family compare
Psest_0306 -1.1 -8.9 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0378 -1.1 -1.4 Lactate dehydrogenase and related dehydrogenases compare
Psest_0175 -1.1 -5.3 Xaa-Pro aminopeptidase compare
Psest_3766 -1.1 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3784 -1.1 -2.0 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2025 -1.1 -2.1 cold shock domain protein CspD compare
Psest_2490 -1.1 -8.1 succinyl-CoA synthetase, alpha subunit compare
Psest_0722 -1.1 -7.1 Predicted ATPase compare
Psest_1486 -1.1 -4.6 hypothetical protein compare
Psest_1249 -1.1 -7.4 serine O-acetyltransferase compare
Psest_1000 -1.1 -5.7 PAS domain S-box compare
Psest_3044 -1.1 -6.8 deoxycytidine triphosphate deaminase compare
Psest_2907 -1.1 -2.3 Protein of unknown function (DUF3618). compare
Psest_2507 -1.1 -7.7 Flagellin and related hook-associated proteins compare
Psest_2083 -1.0 -6.4 Putative sterol carrier protein compare
Psest_0257 -1.0 -2.4 Predicted Zn-dependent peptidases compare
Psest_1506 -1.0 -4.6 queuosine biosynthesis protein QueC compare
Psest_1659 -1.0 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1516 -1.0 -2.0 Uncharacterized lipoprotein compare
Psest_1277 -1.0 -7.4 2-isopropylmalate synthase, yeast type compare
Psest_2530 -1.0 -5.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2531 -1.0 -8.2 cytochrome c oxidase accessory protein FixG compare
Psest_2491 -1.0 -5.0 succinyl-CoA synthetase, beta subunit compare
Psest_1292 -0.9 -6.4 monothiol glutaredoxin, Grx4 family compare
Psest_0867 -0.9 -1.1 hypothetical protein compare
Psest_4307 -0.9 -2.2 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_1053 -0.9 -1.4 hypothetical protein compare
Psest_4103 -0.9 -1.3 AraC-type DNA-binding domain-containing proteins compare
Psest_1111 -0.9 -2.5 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0515 -0.9 -3.4 rare lipoprotein A compare
Psest_0691 -0.9 -7.1 ribonuclease R compare
Psest_1819 -0.9 -8.1 Nucleoside-diphosphate-sugar epimerases compare
Psest_0006 -0.9 -3.0 alkyl hydroperoxide reductase, F subunit compare
Psest_1103 -0.9 -2.4 GTP-binding protein YchF compare
Psest_3447 -0.9 -0.7 Uncharacterized MobA-related protein compare
Psest_2018 -0.9 -4.2 Uncharacterized conserved protein compare
Psest_2122 -0.9 -1.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3092 -0.9 -1.9 ribonuclease III, bacterial compare
Psest_1725 -0.9 -7.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2714 -0.9 -2.1 7-cyano-7-deazaguanine reductase compare
Psest_1122 -0.9 -7.5 putative adhesin (DUF1302) (from data) compare
Psest_3937 -0.9 -1.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0154 -0.8 -3.1 Uncharacterized conserved protein compare
Psest_0097 -0.8 -0.8 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1824 -0.8 -3.7 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2333 -0.8 -1.2 Protein of unknown function (DUF3359). compare
Psest_1809 -0.8 -6.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3904 -0.8 -0.5 hypothetical protein compare
Psest_3303 -0.8 -3.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1463 -0.8 -1.4 SufE protein probably involved in Fe-S center assembly compare
Psest_0412 -0.8 -5.2 8-amino-7-oxononanoate synthase compare
Psest_0309 -0.8 -1.0 RND family efflux transporter, MFP subunit compare
Psest_0292 -0.8 -2.2 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1306 -0.8 -2.0 hypothetical protein compare
Psest_3453 -0.8 -2.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_4219 -0.8 -1.6 DNA polymerase I compare
Psest_1661 -0.8 -2.4 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1923 -0.8 -3.0 adhesin-associated BNR repeat protein (from data) compare
Psest_2646 -0.8 -2.2 SOS regulatory protein LexA compare
Psest_2757 -0.8 -1.1 hypothetical protein compare
Psest_3790 -0.8 -4.8 Cytochrome c5 compare
Psest_1813 -0.8 -5.1 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3479 -0.8 -1.9 molybdenum cofactor synthesis domain compare
Psest_0355 -0.8 -1.8 Glycine cleavage system regulatory protein compare
Psest_2976 -0.8 -2.7 hypothetical protein compare
Psest_3296 -0.8 -3.9 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_2441 -0.8 -4.6 hypothetical protein compare
Psest_1510 -0.8 -3.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4287 -0.8 -4.2 Predicted glutamine amidotransferases compare
Psest_3185 -0.8 -1.7 MoxR-like ATPases compare
Psest_2424 -0.7 -1.8 K+ transport systems, NAD-binding component compare
Psest_2001 -0.7 -2.5 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2232 -0.7 -6.3 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1744 -0.7 -4.4 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_2285 -0.7 -3.9 ATP-dependent protease La compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments