Experiment set5H14 for Pseudomonas stutzeri RCH2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Psest_0062 -3.2 -4.8 tryptophan synthase, alpha subunit compare
Psest_1496 -3.1 -2.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_0498 -3.0 -2.1 ribosome small subunit-dependent GTPase A compare
Psest_2232 -3.0 -16.5 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1724 -2.9 -3.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2944 -2.9 -6.3 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_3092 -2.7 -1.8 ribonuclease III, bacterial compare
Psest_3647 -2.5 -8.6 Indole-3-glycerol phosphate synthase compare
Psest_3129 -2.5 -2.9 tyrosine recombinase XerD compare
Psest_2946 -2.5 -6.8 septum site-determining protein MinD compare
Psest_0063 -2.3 -2.7 tryptophan synthase, beta subunit compare
Psest_0958 -2.3 -10.3 Oligoketide cyclase/lipid transport protein compare
Psest_4298 -2.3 -1.1 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2872 -2.1 -1.4 protein RecA compare
Psest_0542 -2.1 -4.8 AMP nucleosidase compare
Psest_0744 -2.1 -1.0 Uncharacterized conserved protein compare
Psest_4078 -2.1 -1.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1947 -2.0 -4.2 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2357 -1.9 -1.8 Short-chain dehydrogenases of various substrate specificities compare
Psest_3494 -1.9 -2.1 hypothetical protein compare
Psest_3910 -1.9 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2923 -1.8 -1.6 hypothetical protein compare
Psest_3123 -1.8 -4.8 dihydroorotase, homodimeric type compare
Psest_1804 -1.8 -3.8 Superfamily II DNA and RNA helicases compare
Psest_2630 -1.7 -2.8 hypothetical protein compare
Psest_1765 -1.7 -8.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4405 -1.7 -2.6 hypothetical protein compare
Psest_3697 -1.7 -1.5 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1601 -1.7 -1.1 Signal transduction histidine kinase compare
Psest_3303 -1.7 -6.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2104 -1.7 -3.4 IscR-regulated protein YhgI compare
Psest_0309 -1.7 -1.9 RND family efflux transporter, MFP subunit compare
Psest_3306 -1.6 -5.0 conserved hypothetical integral membrane protein compare
Psest_1602 -1.6 -1.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1031 -1.6 -7.1 Uncharacterized protein conserved in bacteria compare
Psest_3648 -1.6 -6.3 anthranilate phosphoribosyltransferase compare
Psest_3824 -1.6 -1.5 Predicted membrane protein compare
Psest_0998 -1.6 -3.2 poly(A) polymerase compare
Psest_1012 -1.6 -5.2 Signal transduction histidine kinase compare
Psest_1143 -1.5 -5.0 Small-conductance mechanosensitive channel compare
Psest_1563 -1.5 -2.0 Protein of unknown function (DUF548). compare
Psest_2584 -1.5 -5.6 Phosphoribosylanthranilate isomerase compare
Psest_0207 -1.5 -1.4 hypothetical protein compare
Psest_0844 -1.5 -2.8 High-affinity Fe2+/Pb2+ permease compare
Psest_0028 -1.4 -2.5 Coproporphyrinogen III oxidase compare
Psest_2243 -1.4 -1.3 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1185 -1.4 -1.6 heavy metal response regulator compare
Psest_3664 -1.4 -2.2 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2945 -1.4 -2.1 septum site-determining protein MinC compare
Psest_3087 -1.3 -2.4 Transcriptional regulator compare
Psest_4222 -1.3 -6.1 Predicted Rossmann fold nucleotide-binding protein compare
Psest_1424 -1.2 -1.2 Lipoate-protein ligase A compare
Psest_1447 -1.2 -4.1 Putative threonine efflux protein compare
Psest_1663 -1.2 -3.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0257 -1.2 -2.9 Predicted Zn-dependent peptidases compare
Psest_1814 -1.2 -8.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0294 -1.2 -3.4 Putative transcriptional regulator compare
Psest_4044 -1.2 -6.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0655 -1.2 -1.6 Chemotaxis signal transduction protein compare
Psest_0789 -1.2 -2.8 hypothetical protein compare
Psest_1677 -1.2 -1.7 Protein-tyrosine-phosphatase compare
Psest_2025 -1.2 -1.9 cold shock domain protein CspD compare
Psest_2240 -1.2 -2.1 hypothetical protein compare
Psest_0094 -1.2 -1.1 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3810 -1.1 -2.4 orotate phosphoribosyltransferase compare
Psest_2566 -1.1 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3307 -1.1 -5.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0030 -1.1 -1.4 Putative NADH-flavin reductase compare
Psest_2285 -1.1 -4.3 ATP-dependent protease La compare
Psest_0097 -1.1 -0.9 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3701 -1.1 -1.8 3-oxoacyl-(acyl-carrier-protein) synthase compare
Psest_0193 -1.1 -0.8 conserved hypothetical protein compare
Psest_1078 -1.1 -1.9 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_2719 -1.1 -4.0 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0181 -1.1 -3.7 glycine cleavage system T protein compare
Psest_1622 -1.1 -2.8 hypothetical protein compare
Psest_0103 -1.1 -1.2 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_1905 -1.1 -1.4 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3767 -1.1 -1.0 tyrosine recombinase XerC compare
Psest_1750 -1.1 -2.2 Protein of unknown function (DUF2802). compare
Psest_0260 -1.1 -1.8 Cell division protein compare
Psest_0393 -1.1 -3.5 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2316 -1.1 -7.7 phosphoenolpyruvate synthase compare
Psest_3228 -1.1 -5.8 Zn-dependent protease with chaperone function compare
Psest_0678 -1.1 -1.2 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_2333 -1.1 -1.2 Protein of unknown function (DUF3359). compare
Psest_2122 -1.1 -1.0 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0969 -1.1 -2.3 transcription elongation factor GreA compare
Psest_1082 -1.1 -1.3 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3878 -1.0 -1.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1428 -1.0 -1.6 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_3777 -1.0 -1.4 diguanylate cyclase (GGDEF) domain compare
Psest_3692 -1.0 -1.2 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_3495 -1.0 -3.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3014 -1.0 -1.1 cob(I)alamin adenosyltransferase compare
Psest_4204 -1.0 -2.1 hypothetical protein compare
Psest_3649 -1.0 -5.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3007 -1.0 -2.2 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase compare
Psest_1574 -1.0 -1.4 phenazine biosynthesis protein PhzF family compare
Psest_3305 -1.0 -5.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0515 -1.0 -2.8 rare lipoprotein A compare
Psest_0243 -1.0 -0.6 hypothetical protein compare
Psest_1910 -1.0 -1.4 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_1895 -1.0 -3.5 Signal transduction histidine kinase compare
Psest_0191 -1.0 -1.2 PAS domain S-box compare
Psest_3700 -1.0 -0.4 hypothetical protein compare
Psest_0568 -1.0 -1.5 pseudouridine synthase compare
Psest_1226 -1.0 -1.8 hypothetical protein compare
Psest_4256 -1.0 -1.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3361 -1.0 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_0313 -1.0 -3.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2011 -1.0 -6.5 Predicted permease compare
Psest_1322 -1.0 -1.1 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1073 -1.0 -2.6 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_3840 -0.9 -2.6 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_2411 -0.9 -3.2 PAS domain S-box compare
Psest_1386 -0.9 -2.2 Na+/H+-dicarboxylate symporters compare
Psest_2346 -0.9 -2.9 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_2407 -0.9 -1.7 nitrite reductase [NAD(P)H], small subunit compare
Psest_2714 -0.9 -2.1 7-cyano-7-deazaguanine reductase compare
Psest_1921 -0.9 -2.4 Protein of unknown function (DUF2797). compare
Psest_4191 -0.9 -1.1 Transcriptional regulator compare
Psest_3304 -0.9 -3.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_4064 -0.9 -1.6 Lactate dehydrogenase and related dehydrogenases compare
Psest_0558 -0.9 -0.6 urease, beta subunit compare
Psest_2037 -0.9 -4.5 uroporphyrin-III C-methyltransferase compare
Psest_1600 -0.9 -1.3 hypothetical protein compare
Psest_4345 -0.9 -4.6 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0722 -0.9 -5.3 Predicted ATPase compare
Psest_0161 -0.9 -1.1 Membrane-bound metallopeptidase compare
Psest_1920 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1627 -0.9 -5.2 Superfamily II DNA and RNA helicases compare
Psest_2581 -0.9 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1013 -0.9 -3.3 phosphoribosylamine--glycine ligase compare
Psest_0159 -0.9 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_0105 -0.9 -1.9 malonate decarboxylase, beta subunit compare
Psest_2585 -0.9 -1.1 pseudouridylate synthase I compare
Psest_4406 -0.9 -1.4 hypothetical protein compare
Psest_2048 -0.9 -2.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3650 -0.9 -6.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0843 -0.9 -4.5 hypothetical protein compare
Psest_2339 -0.9 -2.9 transcription elongation factor GreB compare
Psest_0259 -0.9 -1.4 cell division ATP-binding protein FtsE compare
Psest_0691 -0.9 -6.0 ribonuclease R compare
Psest_2416 -0.9 -2.2 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) compare
Psest_3450 -0.9 -2.0 Permeases compare
Psest_1076 -0.8 -1.4 acetyl-CoA acetyltransferases compare
Psest_2442 -0.8 -1.7 hypothetical protein compare
Psest_0719 -0.8 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_1506 -0.8 -3.3 queuosine biosynthesis protein QueC compare
Psest_2018 -0.8 -3.3 Uncharacterized conserved protein compare
Psest_2712 -0.8 -4.1 Surface lipoprotein compare
Psest_1429 -0.8 -2.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit compare
Psest_4335 -0.8 -1.7 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3045 -0.8 -2.3 Cold shock proteins compare
Psest_0516 -0.8 -4.9 D-alanyl-D-alanine carboxypeptidase compare
Psest_0379 -0.8 -2.0 Galactose mutarotase and related enzymes compare
Psest_0060 -0.8 -1.4 Predicted Fe-S protein compare
Psest_0466 -0.8 -2.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2682 -0.8 -2.8 fumarate hydratase, class II compare
Psest_2744 -0.8 -0.9 Uncharacterized conserved protein compare
Psest_2364 -0.8 -2.3 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_1525 -0.8 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_1008 -0.8 -1.4 hypothetical protein compare
Psest_0212 -0.8 -0.5 exodeoxyribonuclease V, gamma subunit compare
Psest_0845 -0.8 -0.5 hypothetical protein compare
Psest_0536 -0.8 -1.4 thiamine-phosphate pyrophosphorylase compare
Psest_0868 -0.8 -2.4 Glutathione S-transferase compare
Psest_0218 -0.8 -1.7 Acyl-CoA hydrolase compare
Psest_3827 -0.8 -1.6 Transcriptional regulator compare
Psest_1111 -0.8 -1.4 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2579 -0.8 -4.6 amidophosphoribosyltransferase compare
Psest_0390 -0.8 -1.0 Short-chain dehydrogenases of various substrate specificities compare
Psest_1317 -0.8 -2.2 phosphonate ABC transporter, permease protein PhnE compare
Psest_2121 -0.8 -1.9 Predicted ATPase compare
Psest_3543 -0.8 -1.6 hypothetical protein compare
Psest_1449 -0.8 -2.2 Short-chain dehydrogenases of various substrate specificities compare
Psest_1510 -0.8 -2.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1398 -0.8 -2.1 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3991 -0.8 -1.4 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_2671 -0.8 -1.2 Transcriptional regulator compare
Psest_4403 -0.8 -3.7 hypothetical protein compare
Psest_2360 -0.8 -1.1 Uncharacterized protein, putative amidase compare
Psest_3118 -0.8 -5.0 endonuclease III compare
Psest_2762 -0.8 -1.5 hypothetical protein compare
Psest_0485 -0.8 -1.6 clan AA aspartic protease, TIGR02281 family compare
Psest_3519 -0.7 -1.2 Uncharacterized conserved protein compare
Psest_1360 -0.7 -1.3 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_1656 -0.7 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1617 -0.7 -1.0 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_2758 -0.7 -1.4 Predicted transcriptional regulators compare
Psest_4220 -0.7 -1.4 Protein of unknown function (DUF2782). compare
Psest_2405 -0.7 -0.8 NAD-dependent protein deacetylases, SIR2 family compare
Psest_3896 -0.7 -0.7 arsenite-activated ATPase ArsA compare
Psest_0718 -0.7 -2.4 nicotinate-nucleotide pyrophosphorylase compare
Psest_2429 -0.7 -2.9 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_0098 -0.7 -1.8 phosphonate ABC transporter, permease protein PhnE compare
Psest_2885 -0.7 -1.4 Acyl carrier protein compare
Psest_3355 -0.7 -1.4 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Psest_1516 -0.7 -1.3 Uncharacterized lipoprotein compare


Specific Phenotypes

For 1 genes in this experiment