Experiment set5H10 for Pseudomonas stutzeri RCH2

Compare to:

LB with Vanillin 2 mM

200 most important genes:

  gene name fitness t score description  
Psest_2712 -5.5 -8.4 Surface lipoprotein compare
Psest_3306 -4.5 -6.1 conserved hypothetical integral membrane protein compare
Psest_3304 -4.5 -5.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3303 -4.5 -7.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3305 -4.3 -9.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3307 -4.3 -9.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3883 -3.7 -5.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1804 -3.6 -5.5 Superfamily II DNA and RNA helicases compare
Psest_1510 -3.5 -7.3 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0498 -3.4 -2.3 ribosome small subunit-dependent GTPase A compare
Psest_1472 -3.3 -11.8 Protein of unknown function (DUF3108). compare
Psest_2585 -3.2 -2.7 pseudouridylate synthase I compare
Psest_4222 -3.2 -9.4 Predicted Rossmann fold nucleotide-binding protein compare
Psest_0062 -3.1 -7.1 tryptophan synthase, alpha subunit compare
Psest_0309 -3.1 -2.9 RND family efflux transporter, MFP subunit compare
Psest_3647 -3.0 -9.4 Indole-3-glycerol phosphate synthase compare
Psest_3960 -2.9 -1.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2714 -2.8 -4.6 7-cyano-7-deazaguanine reductase compare
Psest_1496 -2.8 -2.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_4274 -2.8 -5.6 hypothetical protein compare
Psest_4078 -2.8 -1.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3648 -2.7 -10.3 anthranilate phosphoribosyltransferase compare
Psest_0466 -2.7 -5.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2643 -2.6 -4.3 Beta-glucosidase-related glycosidases compare
Psest_0542 -2.5 -5.4 AMP nucleosidase compare
Psest_0028 -2.5 -2.4 Coproporphyrinogen III oxidase compare
Psest_2229 -2.4 -6.4 Uncharacterized protein conserved in bacteria compare
Psest_0063 -2.4 -4.6 tryptophan synthase, beta subunit compare
Psest_2584 -2.3 -9.4 Phosphoribosylanthranilate isomerase compare
Psest_0325 -2.3 -13.7 Putative threonine efflux protein compare
Psest_2532 -2.3 -7.7 Uncharacterized protein conserved in bacteria compare
Psest_3129 -2.3 -3.3 tyrosine recombinase XerD compare
Psest_2104 -2.3 -4.6 IscR-regulated protein YhgI compare
Psest_0402 -2.3 -2.1 glycosyltransferase, MGT family compare
Psest_2682 -2.3 -6.2 fumarate hydratase, class II compare
Psest_1686 -2.2 -6.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3496 -2.2 -1.5 Predicted metal-binding protein compare
Psest_1601 -2.2 -1.4 Signal transduction histidine kinase compare
Psest_4142 -2.2 -2.0 hypothetical protein compare
Psest_2490 -2.1 -11.2 succinyl-CoA synthetase, alpha subunit compare
Psest_1704 -2.1 -3.3 Dehydrogenases (flavoproteins) compare
Psest_1661 -2.1 -4.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0310 -2.1 -3.4 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1179 -2.1 -2.1 2-hydroxy-3-oxopropionate reductase compare
Psest_3092 -2.1 -2.6 ribonuclease III, bacterial compare
Psest_3697 -2.0 -1.7 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0218 -2.0 -3.5 Acyl-CoA hydrolase compare
Psest_1506 -2.0 -8.1 queuosine biosynthesis protein QueC compare
Psest_3317 -2.0 -6.0 Phosphotransferase System HPr (HPr) Family compare
Psest_2491 -2.0 -8.2 succinyl-CoA synthetase, beta subunit compare
Psest_4128 -2.0 -1.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1082 -2.0 -2.2 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1143 -1.9 -7.8 Small-conductance mechanosensitive channel compare
Psest_2855 -1.9 -3.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1242 -1.9 -3.8 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1031 -1.9 -8.6 Uncharacterized protein conserved in bacteria compare
Psest_3862 -1.9 -9.0 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1974 -1.8 -7.7 integration host factor, alpha subunit compare
Psest_1295 -1.8 -9.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0958 -1.8 -9.8 Oligoketide cyclase/lipid transport protein compare
Psest_0417 -1.8 -3.6 Acyl-CoA dehydrogenases compare
Psest_0175 -1.7 -6.0 Xaa-Pro aminopeptidase compare
Psest_3649 -1.7 -9.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1657 -1.7 -3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3990 -1.7 -7.7 PAP2 superfamily. compare
Psest_0449 -1.6 -9.2 Glutamine synthetase adenylyltransferase compare
Psest_1505 -1.6 -2.9 Organic radical activating enzymes compare
Psest_1516 -1.6 -2.5 Uncharacterized lipoprotein compare
Psest_2018 -1.6 -4.9 Uncharacterized conserved protein compare
Psest_3100 -1.6 -10.8 RNA polymerase sigma factor RpoE compare
Psest_2945 -1.6 -3.1 septum site-determining protein MinC compare
Psest_0144 -1.6 -4.9 Fe-S cluster protector protein compare
Psest_2232 -1.6 -11.5 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1660 -1.6 -3.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0722 -1.6 -9.5 Predicted ATPase compare
Psest_3013 -1.6 -1.0 cobyrinic acid a,c-diamide synthase compare
Psest_3650 -1.6 -9.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1656 -1.5 -4.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0709 -1.5 -9.7 pseudouridine synthase, RluA family compare
Psest_1627 -1.5 -8.4 Superfamily II DNA and RNA helicases compare
Psest_1144 -1.5 -4.2 AmpG-related permease compare
Psest_1805 -1.5 -2.4 integration host factor, beta subunit compare
Psest_3790 -1.5 -6.9 Cytochrome c5 compare
Psest_0094 -1.5 -1.3 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1659 -1.4 -4.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0568 -1.4 -2.3 pseudouridine synthase compare
Psest_3884 -1.4 -0.8 Signal transduction histidine kinase compare
Psest_2646 -1.4 -2.1 SOS regulatory protein LexA compare
Psest_0006 -1.4 -5.8 alkyl hydroperoxide reductase, F subunit compare
Psest_3664 -1.4 -2.2 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_4003 -1.4 -3.2 TIGR00153 family protein compare
Psest_0844 -1.4 -3.1 High-affinity Fe2+/Pb2+ permease compare
Psest_0740 -1.4 -1.5 Transcriptional regulator compare
Psest_2944 -1.4 -5.9 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2447 -1.4 -1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3237 -1.4 -2.3 hypothetical protein compare
Psest_2017 -1.4 -5.0 Predicted acyltransferase compare
Psest_4098 -1.3 -2.8 Superfamily I DNA and RNA helicases compare
Psest_0181 -1.3 -4.2 glycine cleavage system T protein compare
Psest_4256 -1.3 -1.7 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2946 -1.3 -4.8 septum site-determining protein MinD compare
Psest_3014 -1.3 -1.5 cob(I)alamin adenosyltransferase compare
Psest_4406 -1.3 -1.4 hypothetical protein compare
Psest_1655 -1.3 -5.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0520 -1.3 -1.2 hypothetical protein compare
Psest_2935 -1.3 -1.2 hypothetical protein compare
Psest_4163 -1.3 -1.9 hypothetical protein compare
Psest_3045 -1.3 -1.8 Cold shock proteins compare
Psest_0514 -1.3 -6.4 lytic murein transglycosylase B compare
Psest_2088 -1.3 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_3190 -1.3 -5.7 pyruvate kinase compare
Psest_0696 -1.3 -6.8 hypothetical protein compare
Psest_3908 -1.3 -0.9 Cytochrome c553 compare
Psest_0389 -1.3 -2.1 hypothetical protein compare
Psest_3123 -1.2 -3.5 dihydroorotase, homodimeric type compare
Psest_0732 -1.2 -1.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0969 -1.2 -2.1 transcription elongation factor GreA compare
Psest_0457 -1.2 -3.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3692 -1.2 -1.4 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_2531 -1.2 -9.7 cytochrome c oxidase accessory protein FixG compare
Psest_1491 -1.2 -3.0 Cold shock proteins compare
Psest_2530 -1.2 -6.7 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3473 -1.2 -2.2 hypothetical protein compare
Psest_1923 -1.2 -4.7 adhesin-associated BNR repeat protein (from data) compare
Psest_2899 -1.2 -2.4 hypothetical protein compare
Psest_0040 -1.2 -3.9 Protein of unknown function (DUF2934). compare
Psest_1725 -1.2 -8.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0697 -1.2 -3.8 ribosomal protein L9 compare
Psest_0692 -1.2 -3.3 rRNA methylase, putative, group 3 compare
Psest_3296 -1.2 -5.5 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_1424 -1.1 -1.3 Lipoate-protein ligase A compare
Psest_3008 -1.1 -2.1 cobyric acid synthase CobQ compare
Psest_3512 -1.1 -5.8 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) compare
Psest_0538 -1.1 -10.7 Signal transduction histidine kinase compare
Psest_2288 -1.1 -5.4 trigger factor compare
Psest_0845 -1.1 -0.6 hypothetical protein compare
Psest_2304 -1.1 -2.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_4364 -1.1 -4.4 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_1121 -1.1 -6.0 Hypoxanthine-guanine phosphoribosyltransferase compare
Psest_0843 -1.1 -6.3 hypothetical protein compare
Psest_0716 -1.1 -2.3 Protein of unknown function (DUF3094). compare
Psest_1924 -1.1 -8.8 adhesin-associated MmpL efflux pump (from data) compare
Psest_1947 -1.1 -3.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3006 -1.1 -2.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
Psest_3637 -1.1 -3.7 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
Psest_2726 -1.1 -3.5 Rhodanese-related sulfurtransferase compare
Psest_4243 -1.1 -1.2 type VI secretion lipoprotein, VC_A0113 family compare
Psest_2527 -1.1 -7.6 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2670 -1.1 -2.2 Uncharacterized conserved protein compare
Psest_1600 -1.1 -1.5 hypothetical protein compare
Psest_0862 -1.1 -1.3 Glycosidases compare
Psest_1975 -1.1 -5.2 Predicted transcriptional regulators compare
Psest_2872 -1.0 -1.4 protein RecA compare
Psest_3322 -1.0 -7.7 TIGR02099 family protein compare
Psest_3701 -1.0 -1.9 3-oxoacyl-(acyl-carrier-protein) synthase compare
Psest_3519 -1.0 -1.9 Uncharacterized conserved protein compare
Psest_0089 -1.0 -2.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN compare
Psest_4298 -1.0 -0.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0212 -1.0 -0.7 exodeoxyribonuclease V, gamma subunit compare
Psest_3355 -1.0 -2.0 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Psest_2384 -1.0 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_3494 -1.0 -1.7 hypothetical protein compare
Psest_2083 -1.0 -5.4 Putative sterol carrier protein compare
Psest_3938 -1.0 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2339 -1.0 -4.0 transcription elongation factor GreB compare
Psest_3803 -1.0 -1.5 DNA repair protein radc compare
Psest_0662 -1.0 -0.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0105 -1.0 -2.3 malonate decarboxylase, beta subunit compare
Psest_3784 -1.0 -1.2 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2133 -1.0 -6.7 Uncharacterized protein conserved in bacteria compare
Psest_0487 -1.0 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_2809 -1.0 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3455 -1.0 -1.8 Dihaem cytochrome c. compare
Psest_2988 -1.0 -5.8 aspartate kinase, monofunctional class compare
Psest_3902 -1.0 -1.8 hypothetical protein compare
Psest_1452 -1.0 -5.1 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3882 -1.0 -4.3 Opacity protein and related surface antigens compare
Psest_4183 -1.0 -2.0 PilZ domain. compare
Psest_3991 -0.9 -1.9 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_4314 -0.9 -1.7 ABC-type metal ion transport system, ATPase component compare
Psest_3767 -0.9 -1.4 tyrosine recombinase XerC compare
Psest_3816 -0.9 -0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_4335 -0.9 -2.1 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_2358 -0.9 -1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0313 -0.9 -3.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2011 -0.9 -5.1 Predicted permease compare
Psest_2581 -0.9 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3840 -0.9 -2.7 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3837 -0.9 -3.0 malate synthase G compare
Psest_1824 -0.9 -2.5 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3841 -0.9 -4.7 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_1814 -0.9 -6.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1079 -0.9 -2.1 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_1921 -0.9 -3.0 Protein of unknown function (DUF2797). compare
Psest_2333 -0.9 -1.1 Protein of unknown function (DUF3359). compare
Psest_3900 -0.9 -5.0 Spermidine/putrescine-binding periplasmic protein compare
Psest_0296 -0.9 -5.6 glutathione synthetase, prokaryotic compare
Psest_1241 -0.9 -4.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0515 -0.9 -2.9 rare lipoprotein A compare
Psest_3228 -0.9 -5.4 Zn-dependent protease with chaperone function compare


Specific Phenotypes

For 8 genes in this experiment

For stress Vanillin in Pseudomonas stutzeri RCH2

For stress Vanillin across organisms