Experiment set4S74 for Rhodopseudomonas palustris CGA009
PM with 4-Hydroxybenzoic Acid carbon source
Group: carbon sourceMedia: PM + 4-Hydroxybenzoic Acid (3 mM) + Sodium bicarbonate (10 mM)
Culturing: RPal_CGA009_ML8, Anaerobic, at 30 (C), shaken=0 rpm
By: Yasu on 23-Mar-23
Media components: 12.5 mM Disodium phosphate, 12.5 mM Potassium phosphate monobasic, 1 g/L Ammonium Sulfate, 0.1 mM Sodium thiosulfate pentahydrate, 0.002 g/L 4-Aminobenzoic acid, UW concentrated base (0.02 g/L Nitrilotriacetic acid, 0.0289 g/L Magnesium sulfate, 0.00667 g/L Calcium chloride dihydrate, 1.85e-05 g/L ammonium molybdate tetrahydrate, 0.000698 g/L Iron (II) sulfate heptahydrate, 0.00025 g/L EDTA, 0.001095 g/L Zinc sulfate heptahydrate, 0.000154 g/L Manganese (II) sulfate monohydrate, 3.92e-05 g/L Copper (II) sulfate pentahydrate, 2.5e-05 g/L Cobalt(II) nitrate hexahydrate, 1.77e-05 g/L sodium tetraborate decahydrate)
Specific Phenotypes
For 6 genes in this experiment
For carbon source 4-Hydroxybenzoic Acid in Rhodopseudomonas palustris CGA009
For carbon source 4-Hydroxybenzoic Acid across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Benzoate transport and degradation cluster | 2 |
| Folate Biosynthesis | 1 |
| Protein chaperones | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Pyrimidine metabolism
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Benzoate degradation via CoA ligation
- Nicotinate and nicotinamide metabolism
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: