Experiment set4S512 for Lysobacter sp. OAE881

Compare to:

Ying_OrganicAcid7 rep C; time point 2

200 most important genes:

  gene name fitness t score description  
ABIE51_RS02300 -5.9 -5.7 lauroyl acyltransferase compare
ABIE51_RS14070 -5.6 -6.6 glycosyltransferase family 9 protein compare
ABIE51_RS05540 -5.1 -3.5 hypothetical protein compare
ABIE51_RS04310 -4.9 -7.2 glycosyltransferase compare
ABIE51_RS03935 -4.5 -6.9 hypothetical protein compare
ABIE51_RS14085 -4.5 -3.1 DUF6165 family protein compare
ABIE51_RS09065 -4.5 -15.2 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS15620 -4.5 -6.1 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS17630 -4.4 -6.8 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS13245 -4.4 -3.2 phosphoglycerate dehydrogenase compare
ABIE51_RS06555 -4.4 -7.9 protease modulator HflC compare
ABIE51_RS06340 -4.2 -14.1 hypothetical protein compare
ABIE51_RS06550 -4.2 -11.4 FtsH protease activity modulator HflK compare
ABIE51_RS01280 -4.1 -6.3 lipid-binding SYLF domain-containing protein compare
ABIE51_RS17060 -4.1 -9.9 phosphoglycerate kinase compare
ABIE51_RS14555 -4.1 -2.8 M15 family metallopeptidase compare
ABIE51_RS05300 -4.0 -9.7 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS06000 -4.0 -10.1 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS15530 -4.0 -3.7 YbdD/YjiX family protein compare
ABIE51_RS09375 -4.0 -15.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS04370 -4.0 -10.8 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABIE51_RS15615 -4.0 -11.6 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS02280 -4.0 -7.5 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS03940 -3.9 -7.5 response regulator transcription factor compare
ABIE51_RS16395 -3.9 -2.7 PDZ domain-containing protein compare
ABIE51_RS13315 -3.9 -2.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABIE51_RS04150 -3.8 -19.2 anthranilate synthase component I compare
ABIE51_RS06500 -3.8 -4.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS17715 -3.8 -6.8 type II 3-dehydroquinate dehydratase compare
ABIE51_RS08260 -3.8 -12.3 tryptophan synthase subunit beta compare
ABIE51_RS08250 -3.8 -5.3 phosphoribosylanthranilate isomerase compare
ABIE51_RS04620 -3.7 -16.2 serine hydroxymethyltransferase compare
ABIE51_RS15850 -3.7 -15.4 LysR family transcriptional regulator compare
ABIE51_RS17575 -3.7 -6.1 3-isopropylmalate dehydratase large subunit compare
ABIE51_RS14150 -3.6 -10.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS17270 -3.6 -4.3 DNA-directed RNA polymerase subunit omega compare
ABIE51_RS03160 -3.6 -19.4 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS19030 -3.6 -9.1 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS09520 -3.5 -18.5 phosphoenolpyruvate synthase compare
ABIE51_RS04390 -3.5 -10.8 glycoside hydrolase family 99-like domain-containing protein compare
ABIE51_RS01840 -3.5 -10.5 sulfate/molybdate ABC transporter ATP-binding protein compare
ABIE51_RS17095 -3.5 -15.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABIE51_RS18545 -3.5 -3.3 DUF6249 domain-containing protein compare
ABIE51_RS05180 -3.5 -7.3 glycosyltransferase compare
ABIE51_RS04190 -3.4 -3.8 indole-3-glycerol phosphate synthase TrpC compare
ABIE51_RS01850 -3.4 -12.3 sulfate ABC transporter permease subunit CysT compare
ABIE51_RS04125 -3.4 -6.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS05975 -3.4 -9.6 class II 3-deoxy-7-phosphoheptulonate synthase compare
ABIE51_RS17560 -3.4 -8.3 aminotransferase class IV compare
ABIE51_RS17355 -3.4 -8.1 5-formyltetrahydrofolate cyclo-ligase compare
ABIE51_RS13410 -3.4 -19.0 N-acetylornithine carbamoyltransferase compare
ABIE51_RS09090 -3.3 -7.7 homocysteine S-methyltransferase family protein compare
ABIE51_RS19265 -3.3 -16.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABIE51_RS09365 -3.3 -3.9 glycosyltransferase family 4 protein compare
ABIE51_RS16065 -3.3 -5.6 pyrroline-5-carboxylate reductase compare
ABIE51_RS17565 -3.3 -10.1 threonine dehydratase compare
ABIE51_RS03265 -3.3 -6.8 trypsin-like peptidase domain-containing protein compare
ABIE51_RS12145 -3.3 -13.6 prephenate dehydratase compare
ABIE51_RS13300 -3.3 -5.8 imidazole glycerol phosphate synthase subunit HisF compare
ABIE51_RS03945 -3.2 -18.5 ATP-binding protein compare
ABIE51_RS15890 -3.2 -6.4 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE51_RS14090 -3.2 -8.6 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS12150 -3.2 -17.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABIE51_RS16510 -3.2 -9.8 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS01845 -3.2 -6.4 sulfate ABC transporter permease subunit CysW compare
ABIE51_RS17760 -3.2 -8.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE51_RS07005 -3.2 -6.5 asparagine synthase B compare
ABIE51_RS15525 -3.2 -13.3 carbon starvation CstA family protein compare
ABIE51_RS06730 -3.2 -6.2 LPS assembly lipoprotein LptE compare
ABIE51_RS08265 -3.2 -11.0 tryptophan synthase subunit alpha compare
ABIE51_RS13325 -3.2 -10.8 histidinol dehydrogenase compare
ABIE51_RS04180 -3.2 -6.8 anthranilate phosphoribosyltransferase compare
ABIE51_RS14530 -3.2 -13.6 hypothetical protein compare
ABIE51_RS03165 -3.1 -26.7 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS13405 -3.1 -13.5 argininosuccinate synthase compare
ABIE51_RS04505 -3.1 -8.7 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS02220 -3.1 -8.6 DNA topoisomerase I compare
ABIE51_RS09045 -3.1 -6.8 GntR family transcriptional regulator compare
ABIE51_RS09370 -3.1 -14.3 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABIE51_RS16190 -3.1 -11.4 homoserine O-succinyltransferase compare
ABIE51_RS13890 -3.1 -21.7 RNA polymerase sigma factor RpoE compare
ABIE51_RS01855 -3.1 -10.4 sulfate ABC transporter substrate-binding protein compare
ABIE51_RS09085 -3.1 -10.6 methionine synthase compare
ABIE51_RS17035 -3.1 -21.8 class I fructose-bisphosphate aldolase compare
ABIE51_RS16015 -3.1 -2.9 aspartate carbamoyltransferase catalytic subunit compare
ABIE51_RS11615 -3.1 -13.7 carbamoyl-phosphate synthase large subunit compare
ABIE51_RS06180 -3.0 -6.1 amidophosphoribosyltransferase compare
ABIE51_RS15825 -3.0 -11.6 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABIE51_RS00065 -3.0 -4.5 orotate phosphoribosyltransferase compare
ABIE51_RS01675 -3.0 -18.1 PAS domain-containing hybrid sensor histidine kinase/response regulator compare
ABIE51_RS13420 -3.0 -15.2 hypothetical protein compare
ABIE51_RS13295 -3.0 -8.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABIE51_RS17545 -3.0 -16.2 ketol-acid reductoisomerase compare
ABIE51_RS00035 -3.0 -22.9 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS11490 -2.9 -24.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS13395 -2.9 -6.9 acetylglutamate kinase compare
ABIE51_RS15830 -2.9 -10.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABIE51_RS17550 -2.9 -5.0 acetolactate synthase 2 catalytic subunit compare
ABIE51_RS17585 -2.9 -8.4 3-isopropylmalate dehydrogenase compare
ABIE51_RS01320 -2.9 -20.3 glutamate synthase large subunit compare
ABIE51_RS17520 -2.9 -11.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABIE51_RS15390 -2.9 -2.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS15820 -2.9 -11.8 sulfate adenylyltransferase subunit CysD compare
ABIE51_RS17530 -2.9 -15.4 threonine synthase compare
ABIE51_RS13320 -2.9 -7.5 histidinol-phosphate transaminase compare
ABIE51_RS15815 -2.8 -8.8 sulfate adenylyltransferase subunit CysN compare
ABIE51_RS05295 -2.8 -5.9 response regulator transcription factor compare
ABIE51_RS17580 -2.8 -6.0 3-isopropylmalate dehydratase small subunit compare
ABIE51_RS01315 -2.8 -10.7 FAD-dependent oxidoreductase compare
ABIE51_RS02450 -2.8 -5.8 MarR family transcriptional regulator compare
ABIE51_RS13385 -2.8 -8.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE51_RS03185 -2.8 -9.8 carboxy terminal-processing peptidase compare
ABIE51_RS16185 -2.8 -6.1 O-succinylhomoserine (thiol)-lyase compare
ABIE51_RS08885 -2.8 -2.6 cell division protein ZipA compare
ABIE51_RS17555 -2.8 -1.6 ACT domain-containing protein compare
ABIE51_RS14060 -2.7 -6.3 MBL fold metallo-hydrolase compare
ABIE51_RS14155 -2.7 -7.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABIE51_RS17770 -2.7 -5.1 phosphoribosylamine--glycine ligase compare
ABIE51_RS15855 -2.7 -8.6 siroheme synthase CysG compare
ABIE51_RS16490 -2.7 -16.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE51_RS06905 -2.7 -8.8 RIP metalloprotease RseP compare
ABIE51_RS13540 -2.7 -10.6 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
ABIE51_RS13380 -2.7 -5.5 argininosuccinate lyase compare
ABIE51_RS16420 -2.7 -6.0 TMEM165/GDT1 family protein compare
ABIE51_RS10470 -2.7 -10.2 SMP-30/gluconolactonase/LRE family protein compare
ABIE51_RS17525 -2.6 -12.4 homoserine kinase compare
ABIE51_RS17540 -2.6 -6.8 dihydroxy-acid dehydratase compare
ABIE51_RS17190 -2.6 -2.5 penicillin-binding protein 1A compare
ABIE51_RS08780 -2.6 -9.4 SMC-Scp complex subunit ScpB compare
ABIE51_RS13305 -2.6 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE51_RS18965 -2.6 -14.8 phosphoenolpyruvate carboxylase compare
ABIE51_RS03155 -2.6 -15.9 lytic murein transglycosylase B compare
ABIE51_RS17535 -2.5 -7.2 hypothetical protein compare
ABIE51_RS16260 -2.5 -3.7 hypothetical protein compare
ABIE51_RS03270 -2.5 -23.4 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase compare
ABIE51_RS05275 -2.5 -8.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABIE51_RS00925 -2.5 -16.6 phenylalanine 4-monooxygenase compare
ABIE51_RS01815 -2.5 -3.6 shikimate dehydrogenase compare
ABIE51_RS08880 -2.5 -13.8 chromosome segregation protein SMC compare
ABIE51_RS11495 -2.5 -10.7 ATP-dependent Clp protease adapter ClpS compare
ABIE51_RS06105 -2.4 -11.2 OmpA family protein compare
ABIE51_RS01000 -2.4 -16.0 ABC transporter substrate-binding protein compare
ABIE51_RS16485 -2.4 -2.8 adenosylhomocysteinase compare
ABIE51_RS19025 -2.4 -9.3 thiol:disulfide interchange protein DsbA/DsbL compare
ABIE51_RS15835 -2.4 -9.1 phosphoadenylyl-sulfate reductase compare
ABIE51_RS17400 -2.4 -18.3 DUF192 domain-containing protein compare
ABIE51_RS02085 -2.4 -8.0 cell division ATP-binding protein FtsE compare
ABIE51_RS14345 -2.4 -7.7 aminomethyl-transferring glycine dehydrogenase compare
ABIE51_RS13330 -2.3 -3.0 ATP phosphoribosyltransferase compare
ABIE51_RS00635 -2.3 -5.5 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS03280 -2.3 -17.2 NrdJb compare
ABIE51_RS14215 -2.3 -15.8 M48 family metalloprotease compare
ABIE51_RS17440 -2.3 -18.7 bifunctional DedA family/phosphatase PAP2 family protein compare
ABIE51_RS05175 -2.3 -7.8 hypothetical protein compare
ABIE51_RS07575 -2.3 -3.0 FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein compare
ABIE51_RS17570 -2.3 -4.8 2-isopropylmalate synthase compare
ABIE51_RS17200 -2.3 -11.4 citrate synthase compare
ABIE51_RS00785 -2.3 -6.8 energy transducer TonB compare
ABIE51_RS15990 -2.3 -2.9 PTS sugar transporter subunit IIA compare
ABIE51_RS15955 -2.2 -15.3 RNA polymerase factor sigma-54 compare
ABIE51_RS04535 -2.2 -8.1 type II secretion system major pseudopilin GspG compare
ABIE51_RS13240 -2.2 -10.5 FAD-binding oxidoreductase compare
ABIE51_RS08785 -2.2 -11.8 ScpA family protein compare
ABIE51_RS04335 -2.1 -11.2 hypothetical protein compare
ABIE51_RS15905 -2.1 -11.5 DUF3108 domain-containing protein compare
ABIE51_RS04070 -2.1 -10.7 MarR family winged helix-turn-helix transcriptional regulator compare
ABIE51_RS00540 -2.1 -12.3 NADP-dependent isocitrate dehydrogenase compare
ABIE51_RS06785 -2.1 -13.3 ribonuclease G compare
ABIE51_RS05170 -2.1 -16.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE51_RS04805 -2.1 -2.3 A24 family peptidase compare
ABIE51_RS09425 -2.0 -1.4 helix-turn-helix domain-containing protein compare
ABIE51_RS00990 -2.0 -13.2 VacJ family lipoprotein compare
ABIE51_RS13480 -2.0 -3.3 phytoene/squalene synthase family protein compare
ABIE51_RS02175 -2.0 -14.2 signal peptide peptidase SppA compare
ABIE51_RS16095 -2.0 -2.1 shikimate kinase compare
ABIE51_RS17345 -2.0 -8.4 cell division protein ZapA compare
ABIE51_RS08040 -2.0 -11.6 glucose-6-phosphate isomerase compare
ABIE51_RS15235 -2.0 -3.8 MerR family transcriptional regulator compare
ABIE51_RS11510 -2.0 -14.7 tRNA 2-thiouridine(34) synthase MnmA compare
ABIE51_RS02265 -2.0 -3.5 glycosyltransferase family 2 protein compare
ABIE51_RS04550 -1.9 -6.2 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS08535 -1.9 -8.2 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABIE51_RS01010 -1.9 -10.0 MlaE family lipid ABC transporter permease subunit compare
ABIE51_RS03630 -1.9 -8.2 LacI family DNA-binding transcriptional regulator compare
ABIE51_RS00250 -1.9 -5.9 olefin beta-lactone synthetase compare
ABIE51_RS04565 -1.9 -4.0 type II secretion system protein GspM compare
ABIE51_RS11455 -1.9 -3.5 DNA translocase FtsK compare
ABIE51_RS04245 -1.9 -4.7 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS17260 -1.9 -10.5 RidA family protein compare
ABIE51_RS09340 -1.9 -5.6 (d)CMP kinase compare
ABIE51_RS08810 -1.9 -15.9 glucoamylase family protein compare
ABIE51_RS04645 -1.8 -1.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
ABIE51_RS17320 -1.8 -15.6 aminopeptidase P N-terminal domain-containing protein compare
ABIE51_RS04555 -1.8 -12.3 type II secretion system protein GspK compare
ABIE51_RS01005 -1.8 -16.6 outer membrane lipid asymmetry maintenance protein MlaD compare
ABIE51_RS19260 -1.8 -13.1 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS17705 -1.8 -13.3 protein-disulfide reductase DsbD compare
ABIE51_RS17740 -1.8 -10.3 hypothetical protein compare
ABIE51_RS04835 -1.8 -9.4 glycosyltransferase family 2 protein compare
ABIE51_RS08540 -1.8 -14.0 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Ying_OrganicAcid7 in Lysobacter sp. OAE881

For carbon source Ying_OrganicAcid7 across organisms