Experiment set4S510 for Lysobacter sp. OAE881

Compare to:

Ying_OrganicAcid7 rep A; time point 2

200 most important genes:

  gene name fitness t score description  
ABIE51_RS04310 -6.0 -5.8 glycosyltransferase compare
ABIE51_RS03935 -5.6 -5.4 hypothetical protein compare
ABIE51_RS14070 -5.5 -6.5 glycosyltransferase family 9 protein compare
ABIE51_RS02300 -5.2 -6.2 lauroyl acyltransferase compare
ABIE51_RS05540 -5.2 -3.5 hypothetical protein compare
ABIE51_RS06340 -4.7 -11.8 hypothetical protein compare
ABIE51_RS09065 -4.7 -17.3 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS14085 -4.6 -3.1 DUF6165 family protein compare
ABIE51_RS05975 -4.5 -8.1 class II 3-deoxy-7-phosphoheptulonate synthase compare
ABIE51_RS16260 -4.4 -3.0 hypothetical protein compare
ABIE51_RS09375 -4.4 -15.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS15620 -4.4 -6.6 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS17630 -4.3 -7.1 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS03265 -4.3 -9.9 trypsin-like peptidase domain-containing protein compare
ABIE51_RS15615 -4.3 -11.0 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS09520 -4.3 -19.1 phosphoenolpyruvate synthase compare
ABIE51_RS04370 -4.2 -11.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABIE51_RS06555 -4.1 -7.9 protease modulator HflC compare
ABIE51_RS04505 -4.1 -7.9 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS14555 -4.1 -2.8 M15 family metallopeptidase compare
ABIE51_RS06550 -4.1 -12.2 FtsH protease activity modulator HflK compare
ABIE51_RS17715 -4.0 -6.7 type II 3-dehydroquinate dehydratase compare
ABIE51_RS17580 -4.0 -6.3 3-isopropylmalate dehydratase small subunit compare
ABIE51_RS13320 -4.0 -7.4 histidinol-phosphate transaminase compare
ABIE51_RS13300 -3.9 -7.0 imidazole glycerol phosphate synthase subunit HisF compare
ABIE51_RS16395 -3.9 -2.7 PDZ domain-containing protein compare
ABIE51_RS02280 -3.9 -8.3 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS01280 -3.9 -6.4 lipid-binding SYLF domain-containing protein compare
ABIE51_RS12145 -3.8 -15.9 prephenate dehydratase compare
ABIE51_RS05180 -3.8 -7.6 glycosyltransferase compare
ABIE51_RS03160 -3.7 -20.3 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS15890 -3.7 -6.6 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE51_RS03940 -3.7 -8.5 response regulator transcription factor compare
ABIE51_RS01845 -3.7 -7.3 sulfate ABC transporter permease subunit CysW compare
ABIE51_RS04150 -3.7 -19.3 anthranilate synthase component I compare
ABIE51_RS16015 -3.6 -2.5 aspartate carbamoyltransferase catalytic subunit compare
ABIE51_RS04620 -3.6 -16.6 serine hydroxymethyltransferase compare
ABIE51_RS00065 -3.6 -4.2 orotate phosphoribosyltransferase compare
ABIE51_RS15850 -3.6 -15.5 LysR family transcriptional regulator compare
ABIE51_RS06500 -3.6 -5.4 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS05300 -3.6 -9.9 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS09045 -3.5 -6.3 GntR family transcriptional regulator compare
ABIE51_RS17270 -3.5 -4.1 DNA-directed RNA polymerase subunit omega compare
ABIE51_RS04390 -3.5 -11.2 glycoside hydrolase family 99-like domain-containing protein compare
ABIE51_RS18545 -3.5 -3.3 DUF6249 domain-containing protein compare
ABIE51_RS09370 -3.5 -14.3 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABIE51_RS09085 -3.5 -10.4 methionine synthase compare
ABIE51_RS14090 -3.5 -9.7 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS13330 -3.4 -3.0 ATP phosphoribosyltransferase compare
ABIE51_RS14150 -3.4 -10.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS08260 -3.4 -12.3 tryptophan synthase subunit beta compare
ABIE51_RS13295 -3.4 -9.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABIE51_RS01815 -3.4 -3.8 shikimate dehydrogenase compare
ABIE51_RS04180 -3.4 -6.8 anthranilate phosphoribosyltransferase compare
ABIE51_RS06180 -3.4 -6.4 amidophosphoribosyltransferase compare
ABIE51_RS17560 -3.4 -9.5 aminotransferase class IV compare
ABIE51_RS03165 -3.3 -27.6 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS03945 -3.3 -18.2 ATP-binding protein compare
ABIE51_RS09090 -3.3 -7.9 homocysteine S-methyltransferase family protein compare
ABIE51_RS04190 -3.3 -4.5 indole-3-glycerol phosphate synthase TrpC compare
ABIE51_RS06000 -3.3 -11.7 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS02265 -3.3 -4.6 glycosyltransferase family 2 protein compare
ABIE51_RS13890 -3.3 -24.2 RNA polymerase sigma factor RpoE compare
ABIE51_RS13325 -3.3 -13.6 histidinol dehydrogenase compare
ABIE51_RS16510 -3.3 -10.1 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS17095 -3.3 -14.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABIE51_RS01675 -3.2 -18.4 PAS domain-containing hybrid sensor histidine kinase/response regulator compare
ABIE51_RS00035 -3.2 -22.7 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS13410 -3.2 -14.5 N-acetylornithine carbamoyltransferase compare
ABIE51_RS17035 -3.2 -22.0 class I fructose-bisphosphate aldolase compare
ABIE51_RS17540 -3.2 -7.4 dihydroxy-acid dehydratase compare
ABIE51_RS01855 -3.2 -11.6 sulfate ABC transporter substrate-binding protein compare
ABIE51_RS09365 -3.2 -3.8 glycosyltransferase family 4 protein compare
ABIE51_RS01840 -3.2 -12.0 sulfate/molybdate ABC transporter ATP-binding protein compare
ABIE51_RS13380 -3.2 -4.0 argininosuccinate lyase compare
ABIE51_RS15525 -3.2 -10.4 carbon starvation CstA family protein compare
ABIE51_RS08250 -3.2 -5.3 phosphoribosylanthranilate isomerase compare
ABIE51_RS19265 -3.2 -16.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABIE51_RS15390 -3.1 -3.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS17530 -3.1 -13.3 threonine synthase compare
ABIE51_RS03185 -3.1 -10.5 carboxy terminal-processing peptidase compare
ABIE51_RS07005 -3.1 -6.9 asparagine synthase B compare
ABIE51_RS13540 -3.1 -11.2 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
ABIE51_RS16190 -3.1 -11.4 homoserine O-succinyltransferase compare
ABIE51_RS13385 -3.1 -10.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE51_RS12150 -3.1 -16.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABIE51_RS17545 -3.1 -14.3 ketol-acid reductoisomerase compare
ABIE51_RS15825 -3.1 -13.6 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABIE51_RS17760 -3.1 -8.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE51_RS08265 -3.0 -12.5 tryptophan synthase subunit alpha compare
ABIE51_RS02220 -3.0 -8.2 DNA topoisomerase I compare
ABIE51_RS01315 -3.0 -13.4 FAD-dependent oxidoreductase compare
ABIE51_RS11490 -3.0 -24.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS14530 -3.0 -10.2 hypothetical protein compare
ABIE51_RS15830 -3.0 -8.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABIE51_RS15530 -3.0 -4.3 YbdD/YjiX family protein compare
ABIE51_RS01850 -3.0 -10.9 sulfate ABC transporter permease subunit CysT compare
ABIE51_RS11615 -3.0 -13.9 carbamoyl-phosphate synthase large subunit compare
ABIE51_RS14060 -3.0 -6.7 MBL fold metallo-hydrolase compare
ABIE51_RS08885 -2.9 -2.7 cell division protein ZipA compare
ABIE51_RS16485 -2.9 -3.3 adenosylhomocysteinase compare
ABIE51_RS17565 -2.9 -8.0 threonine dehydratase compare
ABIE51_RS15235 -2.9 -4.3 MerR family transcriptional regulator compare
ABIE51_RS13245 -2.9 -3.9 phosphoglycerate dehydrogenase compare
ABIE51_RS17060 -2.9 -8.2 phosphoglycerate kinase compare
ABIE51_RS13305 -2.9 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE51_RS16490 -2.8 -19.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE51_RS13405 -2.8 -10.6 argininosuccinate synthase compare
ABIE51_RS14155 -2.8 -7.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABIE51_RS15855 -2.8 -5.2 siroheme synthase CysG compare
ABIE51_RS01320 -2.8 -20.4 glutamate synthase large subunit compare
ABIE51_RS16065 -2.8 -6.2 pyrroline-5-carboxylate reductase compare
ABIE51_RS03270 -2.8 -25.2 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase compare
ABIE51_RS04125 -2.8 -7.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS05275 -2.8 -10.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABIE51_RS17555 -2.8 -1.6 ACT domain-containing protein compare
ABIE51_RS17520 -2.7 -9.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABIE51_RS17585 -2.7 -11.0 3-isopropylmalate dehydrogenase compare
ABIE51_RS17575 -2.7 -5.6 3-isopropylmalate dehydratase large subunit compare
ABIE51_RS19030 -2.7 -9.4 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS04245 -2.7 -5.1 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS02450 -2.7 -5.9 MarR family transcriptional regulator compare
ABIE51_RS06105 -2.7 -11.6 OmpA family protein compare
ABIE51_RS06730 -2.7 -4.4 LPS assembly lipoprotein LptE compare
ABIE51_RS04565 -2.7 -5.8 type II secretion system protein GspM compare
ABIE51_RS17525 -2.7 -12.6 homoserine kinase compare
ABIE51_RS03155 -2.6 -16.8 lytic murein transglycosylase B compare
ABIE51_RS08880 -2.6 -14.1 chromosome segregation protein SMC compare
ABIE51_RS02085 -2.6 -6.0 cell division ATP-binding protein FtsE compare
ABIE51_RS16095 -2.6 -1.6 shikimate kinase compare
ABIE51_RS17550 -2.6 -5.6 acetolactate synthase 2 catalytic subunit compare
ABIE51_RS01000 -2.6 -17.2 ABC transporter substrate-binding protein compare
ABIE51_RS06905 -2.6 -8.7 RIP metalloprotease RseP compare
ABIE51_RS15820 -2.6 -15.6 sulfate adenylyltransferase subunit CysD compare
ABIE51_RS16185 -2.6 -9.4 O-succinylhomoserine (thiol)-lyase compare
ABIE51_RS17190 -2.6 -2.5 penicillin-binding protein 1A compare
ABIE51_RS10470 -2.6 -9.9 SMP-30/gluconolactonase/LRE family protein compare
ABIE51_RS03280 -2.6 -17.7 NrdJb compare
ABIE51_RS15905 -2.6 -12.0 DUF3108 domain-containing protein compare
ABIE51_RS15835 -2.6 -10.2 phosphoadenylyl-sulfate reductase compare
ABIE51_RS13315 -2.6 -3.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABIE51_RS19025 -2.5 -9.7 thiol:disulfide interchange protein DsbA/DsbL compare
ABIE51_RS13420 -2.5 -13.5 hypothetical protein compare
ABIE51_RS17400 -2.5 -18.6 DUF192 domain-containing protein compare
ABIE51_RS05295 -2.5 -5.9 response regulator transcription factor compare
ABIE51_RS16525 -2.5 -5.4 RimK/LysX family protein compare
ABIE51_RS13395 -2.5 -7.8 acetylglutamate kinase compare
ABIE51_RS00635 -2.5 -5.6 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS15815 -2.4 -9.3 sulfate adenylyltransferase subunit CysN compare
ABIE51_RS09340 -2.4 -6.1 (d)CMP kinase compare
ABIE51_RS06785 -2.4 -16.2 ribonuclease G compare
ABIE51_RS00925 -2.4 -16.7 phenylalanine 4-monooxygenase compare
ABIE51_RS08780 -2.4 -8.1 SMC-Scp complex subunit ScpB compare
ABIE51_RS08785 -2.4 -12.6 ScpA family protein compare
ABIE51_RS17770 -2.4 -4.7 phosphoribosylamine--glycine ligase compare
ABIE51_RS04535 -2.4 -8.4 type II secretion system major pseudopilin GspG compare
ABIE51_RS00990 -2.4 -14.8 VacJ family lipoprotein compare
ABIE51_RS14215 -2.3 -15.8 M48 family metalloprotease compare
ABIE51_RS13240 -2.3 -11.0 FAD-binding oxidoreductase compare
ABIE51_RS18965 -2.3 -14.9 phosphoenolpyruvate carboxylase compare
ABIE51_RS17440 -2.3 -17.1 bifunctional DedA family/phosphatase PAP2 family protein compare
ABIE51_RS01360 -2.3 -4.2 nitrogen regulation protein NR(I) compare
ABIE51_RS00250 -2.3 -6.5 olefin beta-lactone synthetase compare
ABIE51_RS17355 -2.2 -6.4 5-formyltetrahydrofolate cyclo-ligase compare
ABIE51_RS16420 -2.2 -7.4 TMEM165/GDT1 family protein compare
ABIE51_RS11495 -2.2 -9.3 ATP-dependent Clp protease adapter ClpS compare
ABIE51_RS05170 -2.2 -17.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE51_RS15955 -2.2 -15.4 RNA polymerase factor sigma-54 compare
ABIE51_RS00785 -2.2 -8.0 energy transducer TonB compare
ABIE51_RS02175 -2.2 -14.6 signal peptide peptidase SppA compare
ABIE51_RS17570 -2.2 -2.4 2-isopropylmalate synthase compare
ABIE51_RS08040 -2.2 -11.5 glucose-6-phosphate isomerase compare
ABIE51_RS14135 -2.2 -1.6 tRNA-Val compare
ABIE51_RS04805 -2.2 -2.5 A24 family peptidase compare
ABIE51_RS17535 -2.1 -6.6 hypothetical protein compare
ABIE51_RS01010 -2.1 -9.9 MlaE family lipid ABC transporter permease subunit compare
ABIE51_RS17200 -2.1 -10.9 citrate synthase compare
ABIE51_RS04335 -2.1 -11.3 hypothetical protein compare
ABIE51_RS00540 -2.1 -12.3 NADP-dependent isocitrate dehydrogenase compare
ABIE51_RS15970 -2.1 -5.1 HPr(Ser) kinase/phosphatase compare
ABIE51_RS04520 -2.1 -9.0 type II secretion system ATPase GspE compare
ABIE51_RS04550 -2.1 -5.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS09425 -2.1 -1.4 helix-turn-helix domain-containing protein compare
ABIE51_RS05175 -2.1 -7.2 hypothetical protein compare
ABIE51_RS08810 -2.1 -17.5 glucoamylase family protein compare
ABIE51_RS14345 -2.1 -7.7 aminomethyl-transferring glycine dehydrogenase compare
ABIE51_RS11510 -2.0 -16.0 tRNA 2-thiouridine(34) synthase MnmA compare
ABIE51_RS04545 -2.0 -5.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS02090 -2.0 -9.3 permease-like cell division protein FtsX compare
ABIE51_RS04530 -2.0 -8.1 type II secretion system F family protein compare
ABIE51_RS19260 -2.0 -14.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS15990 -1.9 -2.5 PTS sugar transporter subunit IIA compare
ABIE51_RS17705 -1.9 -14.1 protein-disulfide reductase DsbD compare
ABIE51_RS04555 -1.9 -12.4 type II secretion system protein GspK compare
ABIE51_RS17345 -1.9 -7.7 cell division protein ZapA compare
ABIE51_RS04835 -1.9 -9.9 glycosyltransferase family 2 protein compare
ABIE51_RS01005 -1.9 -17.0 outer membrane lipid asymmetry maintenance protein MlaD compare
ABIE51_RS04575 -1.9 -11.6 type II secretion system secretin GspD compare
ABIE51_RS15095 -1.8 -4.9 TMEM43 family protein compare
ABIE51_RS17495 -1.8 -16.6 TonB-dependent receptor compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Ying_OrganicAcid7 in Lysobacter sp. OAE881

For carbon source Ying_OrganicAcid7 across organisms