Experiment set4S508 for Lysobacter sp. OAE881

Compare to:

Ying_AminoAcid20 rep B; time point 2

200 most important genes:

  gene name fitness t score description  
ABIE51_RS13890 -8.1 -11.1 RNA polymerase sigma factor RpoE compare
ABIE51_RS02220 -8.0 -5.5 DNA topoisomerase I compare
ABIE51_RS00035 -7.9 -16.9 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS03165 -7.9 -22.2 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE51_RS16420 -7.7 -5.3 TMEM165/GDT1 family protein compare
ABIE51_RS11490 -7.5 -15.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE51_RS17515 -7.4 -11.3 phosphomethylpyrimidine synthase ThiC compare
ABIE51_RS17035 -7.2 -11.1 class I fructose-bisphosphate aldolase compare
ABIE51_RS03265 -7.1 -4.9 trypsin-like peptidase domain-containing protein compare
ABIE51_RS10470 -6.8 -11.4 SMP-30/gluconolactonase/LRE family protein compare
ABIE51_RS16555 -6.8 -11.3 SLC13 family permease compare
ABIE51_RS04250 -6.4 -8.8 maleylacetoacetate isomerase compare
ABIE51_RS13145 -6.3 -12.8 acetyl-CoA C-acyltransferase compare
ABIE51_RS17060 -6.2 -4.3 phosphoglycerate kinase compare
ABIE51_RS17095 -6.2 -6.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABIE51_RS03945 -6.1 -14.2 ATP-binding protein compare
ABIE51_RS01280 -6.0 -4.1 lipid-binding SYLF domain-containing protein compare
ABIE51_RS14045 -6.0 -4.1 MoaD/ThiS family protein compare
ABIE51_RS06340 -5.9 -9.9 hypothetical protein compare
ABIE51_RS11460 -5.8 -16.3 alanine dehydrogenase compare
ABIE51_RS09450 -5.8 -5.6 gephyrin-like molybdotransferase Glp compare
ABIE51_RS09445 -5.8 -4.0 NTP transferase domain-containing protein compare
ABIE51_RS19265 -5.7 -6.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABIE51_RS14055 -5.7 -3.9 GTP 3',8-cyclase MoaA compare
ABIE51_RS13260 -5.7 -7.8 amino acid permease compare
ABIE51_RS11615 -5.7 -3.9 carbamoyl-phosphate synthase large subunit compare
ABIE51_RS05300 -5.6 -6.7 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS14040 -5.6 -3.9 molybdenum cofactor biosynthesis protein MoaE compare
ABIE51_RS14090 -5.5 -6.6 PP2C family serine/threonine-protein phosphatase compare
ABIE51_RS04085 -5.5 -12.2 homogentisate 1,2-dioxygenase compare
ABIE51_RS03935 -5.2 -5.1 hypothetical protein compare
ABIE51_RS02300 -5.2 -7.1 lauroyl acyltransferase compare
ABIE51_RS19030 -5.2 -3.6 endonuclease/exonuclease/phosphatase family protein compare
ABIE51_RS19165 -5.1 -7.8 heme o synthase compare
ABIE51_RS04505 -5.1 -3.5 phosphoribosylformylglycinamidine synthase compare
ABIE51_RS19180 -5.0 -7.1 SURF1 family protein compare
ABIE51_RS05540 -5.0 -3.4 hypothetical protein compare
ABIE51_RS02990 -5.0 -7.7 molybdopterin oxidoreductase family protein compare
ABIE51_RS17270 -5.0 -3.4 DNA-directed RNA polymerase subunit omega compare
ABIE51_RS09045 -4.9 -3.4 GntR family transcriptional regulator compare
ABIE51_RS19215 -4.9 -24.5 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
ABIE51_RS08880 -4.9 -14.1 chromosome segregation protein SMC compare
ABIE51_RS16510 -4.9 -12.1 HAMP domain-containing sensor histidine kinase compare
ABIE51_RS08720 -4.9 -8.7 heme exporter protein CcmB compare
ABIE51_RS15015 -4.8 -3.3 preprotein translocase subunit YajC compare
ABIE51_RS03940 -4.8 -3.3 response regulator transcription factor compare
ABIE51_RS17630 -4.8 -4.7 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS06000 -4.8 -4.7 pyridoxal phosphate-dependent aminotransferase compare
ABIE51_RS02975 -4.8 -4.7 DmsC/YnfH family molybdoenzyme membrane anchor subunit compare
ABIE51_RS15890 -4.7 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE51_RS04645 -4.7 -1.9 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
ABIE51_RS02980 -4.6 -4.5 4Fe-4S dicluster domain-containing protein compare
ABIE51_RS04075 -4.6 -14.9 4-hydroxyphenylpyruvate dioxygenase compare
ABIE51_RS09125 -4.6 -24.0 amino acid permease compare
ABIE51_RS08785 -4.6 -14.7 ScpA family protein compare
ABIE51_RS06250 -4.6 -13.8 imidazolonepropionase compare
ABIE51_RS14050 -4.6 -3.2 cyclic pyranopterin monophosphate synthase MoaC compare
ABIE51_RS16360 -4.5 -3.1 glycine cleavage system protein GcvH compare
ABIE51_RS17760 -4.5 -3.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE51_RS08715 -4.5 -13.5 heme ABC transporter permease CcmC compare
ABIE51_RS03160 -4.4 -18.3 septal ring lytic transglycosylase RlpA family protein compare
ABIE51_RS15620 -4.4 -6.1 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS00065 -4.4 -3.0 orotate phosphoribosyltransferase compare
ABIE51_RS13530 -4.4 -13.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE51_RS13205 -4.3 -3.0 hydroxymethylglutaryl-CoA lyase compare
ABIE51_RS06180 -4.3 -3.0 amidophosphoribosyltransferase compare
ABIE51_RS18545 -4.3 -2.9 DUF6249 domain-containing protein compare
ABIE51_RS17770 -4.3 -3.0 phosphoribosylamine--glycine ligase compare
ABIE51_RS09105 -4.2 -2.9 NAD-glutamate dehydrogenase domain-containing protein compare
ABIE51_RS14070 -4.2 -7.3 glycosyltransferase family 9 protein compare
ABIE51_RS04125 -4.2 -4.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE51_RS13115 -4.1 -15.0 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein compare
ABIE51_RS06550 -4.1 -10.2 FtsH protease activity modulator HflK compare
ABIE51_RS14155 -4.0 -4.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABIE51_RS00325 -4.0 -10.2 fatty acid desaturase compare
ABIE51_RS04245 -4.0 -2.7 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS14060 -4.0 -4.7 MBL fold metallo-hydrolase compare
ABIE51_RS08705 -3.9 -13.0 cytochrome c maturation protein CcmE compare
ABIE51_RS16395 -3.9 -2.7 PDZ domain-containing protein compare
ABIE51_RS16260 -3.9 -3.8 hypothetical protein compare
ABIE51_RS04310 -3.9 -3.7 glycosyltransferase compare
ABIE51_RS15430 -3.9 -13.5 cytochrome c1 compare
ABIE51_RS14530 -3.9 -12.0 hypothetical protein compare
ABIE51_RS17705 -3.9 -17.5 protein-disulfide reductase DsbD compare
ABIE51_RS00250 -3.9 -6.4 olefin beta-lactone synthetase compare
ABIE51_RS17440 -3.9 -23.8 bifunctional DedA family/phosphatase PAP2 family protein compare
ABIE51_RS15390 -3.9 -2.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS06555 -3.9 -7.8 protease modulator HflC compare
ABIE51_RS17200 -3.8 -11.5 citrate synthase compare
ABIE51_RS08700 -3.8 -17.4 heme lyase CcmF/NrfE family subunit compare
ABIE51_RS11110 -3.8 -8.8 molybdate ABC transporter substrate-binding protein compare
ABIE51_RS13480 -3.8 -3.7 phytoene/squalene synthase family protein compare
ABIE51_RS14085 -3.8 -3.7 DUF6165 family protein compare
ABIE51_RS08725 -3.8 -5.7 heme ABC exporter ATP-binding protein CcmA compare
ABIE51_RS15970 -3.8 -4.5 HPr(Ser) kinase/phosphatase compare
ABIE51_RS01110 -3.8 -9.3 c-type cytochrome compare
ABIE51_RS19025 -3.7 -9.0 thiol:disulfide interchange protein DsbA/DsbL compare
ABIE51_RS15440 -3.7 -6.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE51_RS08780 -3.7 -9.1 SMC-Scp complex subunit ScpB compare
ABIE51_RS14345 -3.7 -7.4 aminomethyl-transferring glycine dehydrogenase compare
ABIE51_RS16015 -3.6 -2.5 aspartate carbamoyltransferase catalytic subunit compare
ABIE51_RS15400 -3.6 -5.1 Trm112 family protein compare
ABIE51_RS15435 -3.6 -16.2 cytochrome bc complex cytochrome b subunit compare
ABIE51_RS01265 -3.6 -13.5 twin-arginine translocase subunit TatC compare
ABIE51_RS09340 -3.6 -5.4 (d)CMP kinase compare
ABIE51_RS06730 -3.5 -5.2 LPS assembly lipoprotein LptE compare
ABIE51_RS08695 -3.5 -8.9 DsbE family thiol:disulfide interchange protein compare
ABIE51_RS00515 -3.5 -4.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABIE51_RS04385 -3.5 -5.1 CoA transferase subunit B compare
ABIE51_RS03185 -3.5 -8.9 carboxy terminal-processing peptidase compare
ABIE51_RS16365 -3.5 -4.7 glycine cleavage system aminomethyltransferase GcvT compare
ABIE51_RS17405 -3.5 -11.2 rubredoxin compare
ABIE51_RS11495 -3.4 -5.6 ATP-dependent Clp protease adapter ClpS compare
ABIE51_RS09275 -3.4 -13.1 cytochrome c compare
ABIE51_RS09280 -3.4 -13.3 cytochrome c compare
ABIE51_RS14555 -3.4 -3.2 M15 family metallopeptidase compare
ABIE51_RS19210 -3.4 -16.2 cytochrome c oxidase subunit II compare
ABIE51_RS05295 -3.3 -5.1 response regulator transcription factor compare
ABIE51_RS19015 -3.3 -13.5 cytochrome c4 compare
ABIE51_RS16485 -3.3 -3.1 adenosylhomocysteinase compare
ABIE51_RS19190 -3.3 -14.9 cytochrome c oxidase subunit 3 compare
ABIE51_RS11120 -3.3 -5.4 ATP-binding cassette domain-containing protein compare
ABIE51_RS19205 -3.3 -19.3 cytochrome c oxidase subunit I compare
ABIE51_RS16065 -3.2 -9.9 pyrroline-5-carboxylate reductase compare
ABIE51_RS06500 -3.2 -5.6 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS06020 -3.2 -20.0 2-methylcitrate synthase compare
ABIE51_RS04475 -3.1 -16.4 leucyl aminopeptidase compare
ABIE51_RS16415 -3.1 -17.9 aldo/keto reductase compare
ABIE51_RS19195 -3.1 -19.4 cytochrome c oxidase assembly protein compare
ABIE51_RS15615 -3.0 -11.3 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS03155 -3.0 -12.8 lytic murein transglycosylase B compare
ABIE51_RS12565 -3.0 -19.7 acyl-CoA dehydrogenase family protein compare
ABIE51_RS11115 -2.9 -3.3 molybdate ABC transporter permease subunit compare
ABIE51_RS11790 -2.9 -15.5 4a-hydroxytetrahydrobiopterin dehydratase compare
ABIE51_RS15375 -2.9 -9.2 SDR family NAD(P)-dependent oxidoreductase compare
ABIE51_RS08690 -2.9 -4.0 cytochrome c-type biogenesis protein compare
ABIE51_RS10925 -2.9 -5.4 FadR/GntR family transcriptional regulator compare
ABIE51_RS04705 -2.9 -5.4 division/cell wall cluster transcriptional repressor MraZ compare
ABIE51_RS00700 -2.8 -2.6 ABC transporter ATP-binding protein compare
ABIE51_RS04710 -2.8 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE51_RS02280 -2.8 -8.5 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS17740 -2.8 -12.3 hypothetical protein compare
ABIE51_RS14150 -2.8 -10.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS16735 -2.7 -5.1 flagellar export chaperone FliS compare
ABIE51_RS04490 -2.7 -9.3 RDD family protein compare
ABIE51_RS04380 -2.7 -11.1 CoA transferase subunit A compare
ABIE51_RS17190 -2.7 -1.9 penicillin-binding protein 1A compare
ABIE51_RS17710 -2.7 -15.4 TlpA disulfide reductase family protein compare
ABIE51_RS09065 -2.7 -9.3 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS04850 -2.7 -15.7 sigma-54 dependent transcriptional regulator compare
ABIE51_RS08210 -2.7 -8.6 SCO family protein compare
ABIE51_RS03030 -2.6 -6.9 DUF484 family protein compare
ABIE51_RS01095 -2.6 -7.8 cell division protein ZapE compare
ABIE51_RS19170 -2.6 -11.8 COX15/CtaA family protein compare
ABIE51_RS04805 -2.6 -1.8 A24 family peptidase compare
ABIE51_RS08960 -2.6 -6.5 YhdH/YhfP family quinone oxidoreductase compare
ABIE51_RS02450 -2.6 -5.4 MarR family transcriptional regulator compare
ABIE51_RS06785 -2.6 -14.8 ribonuclease G compare
ABIE51_RS05180 -2.5 -7.4 glycosyltransferase compare
ABIE51_RS04535 -2.5 -8.2 type II secretion system major pseudopilin GspG compare
ABIE51_RS17260 -2.5 -11.6 RidA family protein compare
ABIE51_RS19105 -2.5 -11.4 pteridine reductase compare
ABIE51_RS16860 -2.5 -2.8 MinD/ParA family protein compare
ABIE51_RS12635 -2.4 -4.1 hypothetical protein compare
ABIE51_RS17320 -2.4 -17.4 aminopeptidase P N-terminal domain-containing protein compare
ABIE51_RS08810 -2.4 -19.3 glucoamylase family protein compare
ABIE51_RS09365 -2.4 -4.2 glycosyltransferase family 4 protein compare
ABIE51_RS04545 -2.4 -4.2 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS13455 -2.4 -4.2 membrane protein insertion efficiency factor YidD compare
ABIE51_RS09375 -2.4 -9.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS09430 -2.3 -8.1 tetratricopeptide repeat protein compare
ABIE51_RS17660 -2.3 -12.1 malonic semialdehyde reductase compare
ABIE51_RS00635 -2.3 -5.2 hybrid sensor histidine kinase/response regulator compare
ABIE51_RS06255 -2.3 -14.5 formimidoylglutamate deiminase compare
ABIE51_RS05415 -2.2 -5.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE51_RS00925 -2.2 -18.8 phenylalanine 4-monooxygenase compare
ABIE51_RS06815 -2.2 -10.7 (2E,6E)-farnesyl diphosphate synthase compare
ABIE51_RS04620 -2.2 -13.6 serine hydroxymethyltransferase compare
ABIE51_RS09095 -2.2 -6.4 metalloregulator ArsR/SmtB family transcription factor compare
ABIE51_RS09100 -2.2 -11.8 acyl-CoA dehydrogenase family protein compare
ABIE51_RS05175 -2.2 -6.2 hypothetical protein compare
ABIE51_RS04520 -2.1 -10.9 type II secretion system ATPase GspE compare
ABIE51_RS08815 -2.1 -13.1 sugar ABC transporter substrate-binding protein compare
ABIE51_RS13105 -2.1 -18.2 methylmalonyl-CoA mutase family protein compare
ABIE51_RS13815 -2.1 -7.3 beta-N-acetylhexosaminidase compare
ABIE51_RS04835 -2.1 -9.9 glycosyltransferase family 2 protein compare
ABIE51_RS08820 -2.1 -15.0 sugar ABC transporter permease compare
ABIE51_RS18995 -2.1 -6.4 alpha-glucosidase family protein compare
ABIE51_RS04550 -2.1 -5.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS15880 -2.1 -9.7 AI-2E family transporter compare
ABIE51_RS08825 -2.1 -8.4 carbohydrate ABC transporter permease compare
ABIE51_RS06490 -2.0 -4.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABIE51_RS17400 -2.0 -14.5 DUF192 domain-containing protein compare
ABIE51_RS05045 -2.0 -2.7 Holliday junction branch migration protein RuvA compare
ABIE51_RS09425 -2.0 -1.4 helix-turn-helix domain-containing protein compare
ABIE51_RS19175 -2.0 -4.7 hypothetical protein compare
ABIE51_RS08870 -2.0 -9.8 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
ABIE51_RS17500 -2.0 -14.9 helix-turn-helix domain-containing protein compare
ABIE51_RS11515 -1.9 -4.9 high frequency lysogenization protein HflD compare
ABIE51_RS13265 -1.9 -11.2 amino acid permease compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Ying_AminoAcid20 in Lysobacter sp. OAE881

For carbon source Ying_AminoAcid20 across organisms