Experiment set4S468 for Phocaeicola vulgatus CL09T03C04

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9

Group: mouse
Media: + diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono
Culturing: Bvulgatus_CL09T03C04_ML5
By: Surya Tripathi on 12/1/24

Specific Phenotypes

For 11 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms

SEED Subsystems

Subsystem	#Specific
Chitin and N-acetylglucosamine utilization	1
Coenzyme B12 biosynthesis	1
D-Galacturonate and D-Glucuronate Utilization	1
Predicted carbohydrate hydrolases	1
Terminal cytochrome d ubiquinol oxidases	1
Terminal cytochrome oxidases	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose and glucuronate interconversions

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
D-fructuronate degradation	4	4	1
superpathway of β-D-glucuronosides degradation	7	6	1
β-(1,4)-mannan degradation	7	4	1
superpathway of hexuronide and hexuronate degradation	10	9	1
superpathway of microbial D-galacturonate and D-glucuronate degradation	31	14	1