Experiment set4S467 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -5.7 -3.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS10710 -5.6 -3.8 DUF3108 domain-containing protein compare
HMPREF1058_RS14565 -5.5 -3.8 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS09675 -5.5 -3.8 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS12115 -5.5 -3.8 acetylglutamate kinase compare
HMPREF1058_RS02405 -5.1 -3.6 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS08835 -5.1 -5.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS08840 -5.1 -3.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS11040 -5.1 -3.5 polysaccharide deacetylase family protein compare
HMPREF1058_RS00625 -4.9 -5.9 MFS transporter compare
HMPREF1058_RS08855 -4.9 -6.7 arginine repressor compare
HMPREF1058_RS02410 -4.8 -3.3 methylmalonyl-CoA mutase compare
HMPREF1058_RS09585 -4.7 -7.8 argininosuccinate lyase compare
HMPREF1058_RS14610 -4.7 -3.2 adenylosuccinate synthase compare
HMPREF1058_RS12315 -4.6 -8.8 glycoside hydrolase family 97 protein compare
HMPREF1058_RS12780 -4.5 -3.1 M20 family metallo-hydrolase compare
HMPREF1058_RS08640 -4.5 -2.0 acetylornithine carbamoyltransferase compare
HMPREF1058_RS14740 -4.4 -4.3 iron ABC transporter permease compare
HMPREF1058_RS14550 -4.4 -5.3 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS02880 -4.4 -8.5 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS12105 -4.4 -3.0 shikimate kinase compare
HMPREF1058_RS12575 -4.4 -15.8 mannose-1-phosphate guanylyltransferase compare
HMPREF1058_RS06380 -4.2 -2.9 copper homeostasis protein CutC compare
HMPREF1058_RS00205 -4.2 -4.1 cation:proton antiporter compare
HMPREF1058_RS14770 -4.2 -2.9 prephenate dehydrogenase compare
HMPREF1058_RS15075 -4.2 -2.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS10965 -4.1 -7.4 cation transporter compare
HMPREF1058_RS09620 -4.1 -2.8 hypothetical protein compare
HMPREF1058_RS08995 -4.0 -12.7 GH92 family glycosyl hydrolase compare
HMPREF1058_RS09180 -4.0 -2.8 hypothetical protein compare
HMPREF1058_RS14745 -4.0 -3.9 ABC transporter substrate-binding protein compare
HMPREF1058_RS13655 -4.0 -8.6 cardiolipin synthase compare
HMPREF1058_RS18635 -4.0 -1.2 PepSY-like domain-containing protein compare
HMPREF1058_RS14735 -4.0 -6.1 ABC transporter ATP-binding protein compare
HMPREF1058_RS09460 -3.9 -8.0 gamma carbonic anhydrase family protein compare
HMPREF1058_RS14660 -3.9 -2.7 TolC family protein compare
HMPREF1058_RS10295 -3.9 -2.0 hypothetical protein compare
HMPREF1058_RS09590 -3.9 -6.0 hypothetical protein compare
HMPREF1058_RS14655 -3.9 -5.3 CusA/CzcA family heavy metal efflux RND transporter compare
HMPREF1058_RS13595 -3.9 -7.9 phosphotransferase compare
HMPREF1058_RS07955 -3.8 -2.6 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS09745 -3.8 -6.9 glycosyltransferase compare
HMPREF1058_RS14120 -3.8 -6.9 DUF349 domain-containing protein compare
HMPREF1058_RS01450 -3.7 -2.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
HMPREF1058_RS14200 -3.7 -6.2 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS02975 -3.7 -1.5 hypothetical protein compare
HMPREF1058_RS08025 -3.7 -2.5 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS10995 -3.7 -2.5 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS14785 -3.7 -2.5 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS14790 -3.6 -6.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS15660 -3.6 -10.5 galactokinase compare
HMPREF1058_RS16625 -3.5 -2.4 hypothetical protein compare
HMPREF1058_RS00630 -3.5 -8.1 carbohydrate kinase compare
HMPREF1058_RS17170 -3.5 -3.4 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS08615 -3.5 -8.6 RluA family pseudouridine synthase compare
HMPREF1058_RS17775 -3.4 -4.1 hypothetical protein compare
HMPREF1058_RS07190 -3.4 -4.7 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS15635 -3.4 -11.9 L-arabinose isomerase compare
HMPREF1058_RS16620 -3.4 -2.4 GGGtGRT protein compare
HMPREF1058_RS12715 -3.4 -13.0 porin family protein compare
HMPREF1058_RS14755 -3.3 -10.3 hypothetical protein compare
HMPREF1058_RS06870 -3.3 -12.3 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS09610 -3.3 -4.6 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS10840 -3.3 -2.0 hypothetical protein compare
HMPREF1058_RS10490 -3.3 -8.5 rhomboid family intramembrane serine protease compare
HMPREF1058_RS14645 -3.3 -7.0 hypothetical protein compare
HMPREF1058_RS06085 -3.3 -3.2 hypothetical protein compare
HMPREF1058_RS10460 -3.3 -14.4 NAD-dependent epimerase/dehydratase family protein compare
HMPREF1058_RS14650 -3.3 -2.3 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS15640 -3.3 -5.8 L-ribulose-5-phosphate 4-epimerase compare
HMPREF1058_RS07005 -3.2 -4.4 alpha-N-arabinofuranosidase compare
HMPREF1058_RS10225 -3.2 -3.1 hypothetical protein compare
HMPREF1058_RS02885 -3.2 -9.5 response regulator transcription factor compare
HMPREF1058_RS17070 -3.2 -10.1 ribokinase compare
HMPREF1058_RS16500 -3.2 -2.2 OadG family protein compare
HMPREF1058_RS10910 -3.2 -16.5 glycosyltransferase family 39 protein compare
HMPREF1058_RS00620 -3.2 -14.8 GH32 C-terminal domain-containing protein compare
HMPREF1058_RS09890 -3.2 -1.0 DUF3876 domain-containing protein compare
HMPREF1058_RS04520 -3.2 -1.0 hypothetical protein compare
HMPREF1058_RS08845 -3.1 -7.3 argininosuccinate synthase compare
HMPREF1058_RS04375 -3.1 -2.1 carbon-nitrogen hydrolase compare
HMPREF1058_RS02095 -3.1 -6.3 efflux transporter outer membrane subunit compare
HMPREF1058_RS16505 -3.1 -2.1 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS04005 -3.1 -4.2 patatin-like phospholipase family protein compare
HMPREF1058_RS10080 -3.1 -12.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS13350 -3.0 -3.0 Trk system potassium transporter TrkA compare
HMPREF1058_RS09185 -3.0 -2.1 DUF4252 domain-containing protein compare
HMPREF1058_RS06195 -3.0 -2.1 diaminopimelate decarboxylase compare
HMPREF1058_RS19090 -3.0 -0.9 tRNA-Phe compare
HMPREF1058_RS02100 -3.0 -10.6 efflux RND transporter permease subunit compare
HMPREF1058_RS14795 -3.0 -4.6 prephenate dehydratase compare
HMPREF1058_RS15645 -3.0 -5.3 NUDIX hydrolase compare
HMPREF1058_RS06350 -3.0 -3.5 SoxR reducing system RseC family protein compare
HMPREF1058_RS16510 -3.0 -2.0 methylmalonyl-CoA epimerase compare
HMPREF1058_RS12785 -3.0 -12.9 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS10525 -3.0 -15.1 carbohydrate binding domain-containing protein compare
HMPREF1058_RS07390 -3.0 -7.6 cyclically-permuted mutarotase family protein compare
HMPREF1058_RS17235 -2.9 -6.3 glycoside hydrolase family 88 protein compare
HMPREF1058_RS09000 -2.9 -4.6 FecR domain-containing protein compare
HMPREF1058_RS14760 -2.9 -15.5 TonB-dependent receptor compare
HMPREF1058_RS18685 -2.9 -2.8 F0F1 ATP synthase subunit delta compare
HMPREF1058_RS14490 -2.9 -5.2 S9 family peptidase compare
HMPREF1058_RS07295 -2.9 -5.8 AGE family epimerase/isomerase compare
HMPREF1058_RS06060 -2.9 -4.8 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS10075 -2.9 -9.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS02215 -2.9 -8.8 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
HMPREF1058_RS07420 -2.8 -8.1 exo-alpha-sialidase compare
HMPREF1058_RS06320 -2.8 -3.3 electron transport complex subunit RsxA compare
HMPREF1058_RS12040 -2.8 -9.8 butyrate kinase compare
HMPREF1058_RS15565 -2.8 -13.8 hypothetical protein compare
HMPREF1058_RS12345 -2.8 -10.0 4-alpha-glucanotransferase compare
HMPREF1058_RS15630 -2.8 -8.7 FGGY-family carbohydrate kinase compare
HMPREF1058_RS16760 -2.8 -1.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS07040 -2.8 -9.0 tetratricopeptide repeat protein compare
HMPREF1058_RS07200 -2.8 -7.6 tryptophan synthase subunit alpha compare
HMPREF1058_RS09685 -2.8 -10.1 tetratricopeptide repeat protein compare
HMPREF1058_RS14285 -2.8 -1.0 DUF5056 domain-containing protein compare
HMPREF1058_RS17150 -2.7 -11.9 S41 family peptidase compare
HMPREF1058_RS08065 -2.7 -7.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS07070 -2.7 -7.0 PCMD domain-containing protein compare
HMPREF1058_RS17050 -2.7 -1.9 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS05145 -2.7 -1.9 ATP-binding protein compare
HMPREF1058_RS17060 -2.7 -1.8 HAD family hydrolase compare
HMPREF1058_RS02170 -2.7 -2.6 hypothetical protein compare
HMPREF1058_RS06875 -2.7 -6.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS01655 -2.7 -2.6 DUF4296 domain-containing protein compare
HMPREF1058_RS07965 -2.7 -7.4 chromate transporter compare
HMPREF1058_RS07960 -2.6 -14.7 response regulator compare
HMPREF1058_RS10900 -2.6 -8.7 glycosyltransferase compare
HMPREF1058_RS11730 -2.6 -1.4 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS10270 -2.6 -2.9 hypothetical protein compare
HMPREF1058_RS18235 -2.6 -2.5 3'-5' exonuclease compare
HMPREF1058_RS16235 -2.6 -7.9 AMP-binding protein compare
HMPREF1058_RS21520 -2.6 -0.8 hypothetical protein compare
HMPREF1058_RS07440 -2.6 -1.8 aspartate--ammonia ligase compare
HMPREF1058_RS00600 -2.6 -5.7 diaminopimelate dehydrogenase compare
HMPREF1058_RS15390 -2.6 -3.9 5-methyltetrahydrofolate--homocysteine methyltransferase compare
HMPREF1058_RS09750 -2.5 -1.8 glycosyltransferase compare
HMPREF1058_RS06640 -2.5 -3.5 chain-length determining protein compare
HMPREF1058_RS07170 -2.5 -7.7 tryptophan synthase subunit beta compare
HMPREF1058_RS0119685 -2.5 -1.1 DUF4133 domain-containing protein compare
HMPREF1058_RS10725 -2.5 -8.1 6-phosphofructokinase compare
HMPREF1058_RS06645 -2.5 -4.1 SLBB domain-containing protein compare
HMPREF1058_RS02735 -2.5 -7.1 zinc metallopeptidase compare
HMPREF1058_RS03110 -2.4 -5.4 ABC transporter ATP-binding protein compare
HMPREF1058_RS17940 -2.4 -2.4 alpha-amylase compare
HMPREF1058_RS07455 -2.4 -2.3 HDIG domain-containing protein compare
HMPREF1058_RS07675 -2.4 -4.4 elongation factor G compare
HMPREF1058_RS07655 -2.4 -1.0 hypothetical protein compare
HMPREF1058_RS07970 -2.4 -8.1 chromate transporter compare
HMPREF1058_RS10835 -2.4 -3.3 UDP-galactopyranose mutase compare
HMPREF1058_RS01745 -2.4 -1.7 PorT family protein compare
HMPREF1058_RS11490 -2.4 -1.7 redox-regulated ATPase YchF compare
HMPREF1058_RS14555 -2.4 -1.4 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS07720 -2.4 -6.1 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS00590 -2.4 -2.8 hypothetical protein compare
HMPREF1058_RS11315 -2.4 -11.5 tRNA pseudouridine(55) synthase TruB compare
HMPREF1058_RS04065 -2.4 -1.2 VWA domain-containing protein compare
HMPREF1058_RS08060 -2.4 -6.1 hypothetical protein compare
HMPREF1058_RS08775 -2.4 -3.0 DUF1893 domain-containing protein compare
HMPREF1058_RS17885 -2.3 -10.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS17045 -2.3 -2.3 hypothetical protein compare
HMPREF1058_RS07750 -2.3 -11.4 efflux RND transporter permease subunit compare
HMPREF1058_RS11535 -2.3 -4.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS00595 -2.3 -1.6 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS04035 -2.3 -1.6 hypothetical protein compare
HMPREF1058_RS16195 -2.3 -4.5 hypothetical protein compare
HMPREF1058_RS15920 -2.3 -1.4 hypothetical protein compare
HMPREF1058_RS12795 -2.3 -5.8 CYTH domain-containing protein compare
HMPREF1058_RS04290 -2.3 -3.5 DUF1015 domain-containing protein compare
HMPREF1058_RS07890 -2.2 -6.9 hypothetical protein compare
HMPREF1058_RS02105 -2.2 -5.4 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS17950 -2.2 -3.1 biotin synthase BioB compare
HMPREF1058_RS06560 -2.2 -1.5 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS16900 -2.2 -4.7 hypothetical protein compare
HMPREF1058_RS01685 -2.2 -2.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS15435 -2.2 -5.7 hypothetical protein compare
HMPREF1058_RS20495 -2.2 -4.4 hypothetical protein compare
HMPREF1058_RS01650 -2.2 -3.0 hypothetical protein compare
HMPREF1058_RS10055 -2.2 -12.5 translational GTPase TypA compare
HMPREF1058_RS06335 -2.2 -1.5 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS07765 -2.2 -4.9 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS18680 -2.2 -3.6 F0F1 ATP synthase subunit B compare
HMPREF1058_RS03080 -2.2 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
HMPREF1058_RS06040 -2.2 -3.0 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS07175 -2.2 -7.7 anthranilate synthase component I family protein compare
HMPREF1058_RS17935 -2.2 -4.2 glycosyltransferase compare
HMPREF1058_RS12200 -2.2 -5.7 CvpA family protein compare
HMPREF1058_RS04015 -2.2 -3.6 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS03805 -2.2 -3.9 PorT family protein compare
HMPREF1058_RS07650 -2.2 -3.0 MarR family transcriptional regulator compare
HMPREF1058_RS16495 -2.1 -1.5 biotin/lipoyl-binding protein compare
HMPREF1058_RS18220 -2.1 -4.3 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
HMPREF1058_RS12805 -2.1 -7.1 RNA polymerase sigma factor compare
HMPREF1058_RS03105 -2.1 -3.0 ABC transporter permease compare
HMPREF1058_RS14270 -2.1 -7.5 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS14835 -2.1 -2.9 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS03210 -2.1 -11.1 alpha-glucan family phosphorylase compare
HMPREF1058_RS06345 -2.1 -4.6 Fe-S cluster domain-containing protein compare
HMPREF1058_RS07300 -2.1 -5.7 MFS transporter compare


Specific Phenotypes

For 5 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms