Experiment set4S467 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS02220 +10.7 37.8 branched-chain amino acid aminotransferase compare
HMPREF1058_RS07310 +9.4 29.1 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS16830 +7.3 26.8 acyl-ACP thioesterase compare
HMPREF1058_RS14020 +6.9 42.6 cardiolipin synthase compare
HMPREF1058_RS16815 +5.8 12.3 dihydroxy-acid dehydratase compare
HMPREF1058_RS16820 +5.1 9.4 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS10955 +4.8 23.0 phosphatase PAP2 family protein compare
HMPREF1058_RS15100 +4.5 6.8 hypothetical protein compare
HMPREF1058_RS02255 +4.3 9.6 DUF3244 domain-containing protein compare
HMPREF1058_RS02250 +4.1 26.3 hypothetical protein compare
HMPREF1058_RS15090 +4.0 10.0 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS16515 +3.9 17.8 GNAT family N-acetyltransferase compare
HMPREF1058_RS03950 +3.8 2.6 type I restriction enzyme HsdR N-terminal domain-containing protein compare
HMPREF1058_RS02260 +3.8 13.5 hypothetical protein compare
HMPREF1058_RS21310 +3.8 9.5 hypothetical protein compare
HMPREF1058_RS07245 +3.7 6.7 Rne/Rng family ribonuclease compare
HMPREF1058_RS11270 +3.6 20.8 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS15460 +3.5 13.6 amidohydrolase compare
HMPREF1058_RS02245 +3.4 4.7 cytidylate kinase-like family protein compare
HMPREF1058_RS15080 +3.2 7.1 glycoside hydrolase family 97 protein compare
HMPREF1058_RS10860 +3.1 16.7 glycosyltransferase family 8 protein compare
HMPREF1058_RS0119645 +2.9 4.8 AAA family ATPase compare
HMPREF1058_RS10705 +2.7 12.0 hypothetical protein compare
HMPREF1058_RS03195 +2.7 5.5 V-type ATP synthase subunit I compare
HMPREF1058_RS02800 +2.6 8.6 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS10230 +2.6 2.0 hypothetical protein compare
HMPREF1058_RS15095 +2.5 6.2 hypothetical protein compare
HMPREF1058_RS02755 +2.5 1.7 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS15085 +2.5 7.9 TonB-dependent receptor compare
HMPREF1058_RS05200 +2.4 6.5 MaoC family dehydratase compare
HMPREF1058_RS03185 +2.4 9.6 V-type ATP synthase subunit B compare
HMPREF1058_RS06265 +2.4 11.7 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS03175 +2.3 9.2 DUF2764 domain-containing protein compare
HMPREF1058_RS10890 +2.3 10.0 glycosyltransferase family 2 protein compare
HMPREF1058_RS11825 +2.3 7.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS11435 +2.2 4.7 DNA mismatch repair protein MutS compare
HMPREF1058_RS14605 +2.2 5.0 transcriptional repressor compare
HMPREF1058_RS14545 +2.2 11.0 2-isopropylmalate synthase compare
HMPREF1058_RS03190 +2.2 7.1 V-type ATP synthase subunit D compare
HMPREF1058_RS03180 +2.1 10.6 V-type ATP synthase subunit A compare
HMPREF1058_RS10885 +2.1 8.7 glycosyltransferase compare
HMPREF1058_RS03170 +2.1 7.2 hypothetical protein compare
HMPREF1058_RS07285 +2.1 10.7 ROK family transcriptional regulator compare
HMPREF1058_RS04545 +2.0 5.7 hypothetical protein compare
HMPREF1058_RS03200 +2.0 7.9 V-type ATP synthase subunit K compare
HMPREF1058_RS08040 +1.9 1.7 HD domain-containing protein compare
HMPREF1058_RS16825 +1.9 2.1 acetolactate synthase small subunit compare
HMPREF1058_RS05035 +1.9 10.9 C69 family dipeptidase compare
HMPREF1058_RS02320 +1.9 4.4 hypothetical protein compare
HMPREF1058_RS02750 +1.9 2.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS01625 +1.9 2.8 hypothetical protein compare
HMPREF1058_RS04365 +1.8 13.6 translocation/assembly module TamB compare
HMPREF1058_RS01640 +1.8 13.0 BamA/TamA family outer membrane protein compare
HMPREF1058_RS01615 +1.8 1.8 tRNA-Lys compare
HMPREF1058_RS21620 +1.8 3.1 hypothetical protein compare
HMPREF1058_RS13785 +1.8 9.4 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS06260 +1.8 6.1 DUF3943 domain-containing protein compare
HMPREF1058_RS04430 +1.8 6.5 alpha-1,2-fucosyltransferase compare
HMPREF1058_RS11880 +1.7 11.0 hypothetical protein compare
HMPREF1058_RS01445 +1.7 2.6 cysteine-rich CWC family protein compare
HMPREF1058_RS01880 +1.7 1.4 hypothetical protein compare
HMPREF1058_RS10815 +1.7 5.2 DUF4249 domain-containing protein compare
HMPREF1058_RS11275 +1.7 1.7 hypothetical protein compare
HMPREF1058_RS13780 +1.7 12.2 TonB-dependent receptor compare
HMPREF1058_RS18870 +1.6 2.0 hypothetical protein compare
HMPREF1058_RS02490 +1.6 5.5 four helix bundle protein compare
HMPREF1058_RS05355 +1.6 6.1 helix-turn-helix domain-containing protein compare
HMPREF1058_RS15430 +1.6 9.6 aspartate-alanine antiporter compare
HMPREF1058_RS0119260 +1.6 2.2 hypothetical protein compare
HMPREF1058_RS02085 +1.5 6.2 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS03295 +1.5 2.8 sulfur carrier protein ThiS compare
HMPREF1058_RS04995 +1.5 6.7 putative sulfate exporter family transporter compare
HMPREF1058_RS05465 +1.5 4.2 DNA-binding protein compare
HMPREF1058_RS16420 +1.5 5.6 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS06420 +1.4 2.9 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS02480 +1.4 4.3 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS10875 +1.4 7.3 glycosyltransferase compare
HMPREF1058_RS05930 +1.4 5.0 MFS transporter compare
HMPREF1058_RS06255 +1.4 5.1 hypothetical protein compare
HMPREF1058_RS17290 +1.4 1.9 glycosyltransferase family 2 protein compare
HMPREF1058_RS17870 +1.3 6.1 metallophosphoesterase compare
HMPREF1058_RS06080 +1.3 6.0 glutamine synthetase III compare
HMPREF1058_RS06375 +1.3 2.2 glutaminase A compare
HMPREF1058_RS17650 +1.3 3.2 response regulator transcription factor compare
HMPREF1058_RS10805 +1.3 4.1 FecR family protein compare
HMPREF1058_RS0119640 +1.3 3.0 hypothetical protein compare
HMPREF1058_RS19025 +1.3 1.9 hypothetical protein compare
HMPREF1058_RS02335 +1.3 3.3 hypothetical protein compare
HMPREF1058_RS06250 +1.3 7.3 AMP-binding protein compare
HMPREF1058_RS17175 +1.2 2.6 MarC family protein compare
HMPREF1058_RS13750 +1.2 8.6 TonB-dependent receptor compare
HMPREF1058_RS10305 +1.2 5.3 hypothetical protein compare
HMPREF1058_RS04580 +1.2 2.1 hypothetical protein compare
HMPREF1058_RS15025 +1.2 6.4 FecR family protein compare
HMPREF1058_RS11815 +1.2 7.3 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS17865 +1.2 4.0 hypothetical protein compare
HMPREF1058_RS17645 +1.1 6.9 DUF5113 domain-containing protein compare
HMPREF1058_RS13425 +1.1 4.0 HU family DNA-binding protein compare
HMPREF1058_RS16430 +1.1 4.7 FecR domain-containing protein compare
HMPREF1058_RS05950 +1.1 4.4 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS18570 +1.1 2.2 GNAT family N-acetyltransferase compare
HMPREF1058_RS01290 +1.1 2.5 DUF1622 domain-containing protein compare
HMPREF1058_RS09715 +1.1 3.2 hypothetical protein compare
HMPREF1058_RS08765 +1.1 7.1 AMP-binding protein compare
HMPREF1058_RS16250 +1.1 4.3 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS11840 +1.1 7.5 hypothetical protein compare
HMPREF1058_RS08325 +1.1 2.3 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS04670 +1.1 1.4 fluoride efflux transporter CrcB compare
HMPREF1058_RS07165 +1.1 3.5 YtxH domain-containing protein compare
HMPREF1058_RS05945 +1.1 5.7 DUF4836 family protein compare
HMPREF1058_RS15440 +1.1 5.6 tetratricopeptide repeat protein compare
HMPREF1058_RS13745 +1.1 6.6 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS15895 +1.1 3.3 transcriptional repressor compare
HMPREF1058_RS0119380 +1.0 2.0 IS66 family insertion sequence element accessory protein TnpB compare
HMPREF1058_RS08275 +1.0 2.4 DoxX family protein compare
HMPREF1058_RS15615 +1.0 3.9 DUF4468 domain-containing protein compare
HMPREF1058_RS0120025 +1.0 3.7 DUF975 family protein compare
HMPREF1058_RS04740 +1.0 3.9 DUF5606 domain-containing protein compare
HMPREF1058_RS0119660 +1.0 7.0 DNA cytosine methyltransferase compare
HMPREF1058_RS09960 +1.0 3.0 hypothetical protein compare
HMPREF1058_RS02495 +1.0 4.7 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS10330 +1.0 2.6 hypothetical protein compare
HMPREF1058_RS18010 +1.0 3.2 L-asparaginase 2 compare
HMPREF1058_RS16690 +1.0 4.5 NTP transferase domain-containing protein compare
HMPREF1058_RS17205 +1.0 1.9 DUF4199 domain-containing protein compare
HMPREF1058_RS16425 +1.0 7.1 TonB-dependent receptor compare
HMPREF1058_RS13770 +1.0 7.3 TonB-dependent receptor compare
HMPREF1058_RS15570 +1.0 6.5 hypothetical protein compare
HMPREF1058_RS21590 +1.0 1.0 hypothetical protein compare
HMPREF1058_RS06070 +1.0 1.7 ferritin compare
HMPREF1058_RS17610 +1.0 3.8 DUF47 domain-containing protein compare
HMPREF1058_RS07225 +1.0 2.3 gliding motility-associated protein GldE compare
HMPREF1058_RS07920 +1.0 3.4 DUF108 domain-containing protein compare
HMPREF1058_RS07060 +1.0 4.4 DUF3869 domain-containing protein compare
HMPREF1058_RS02535 +1.0 4.0 imidazolonepropionase compare
HMPREF1058_RS09240 +1.0 3.8 type I methionyl aminopeptidase compare
HMPREF1058_RS01205 +1.0 1.6 methyltransferase compare
HMPREF1058_RS21210 +1.0 2.7 hypothetical protein compare
HMPREF1058_RS07080 +1.0 1.5 YtxH domain-containing protein compare
HMPREF1058_RS02525 +1.0 2.8 glutamate formimidoyltransferase compare
HMPREF1058_RS01530 +1.0 1.7 NAD(P)H-dependent oxidoreductase compare
HMPREF1058_RS15525 +1.0 2.0 hypothetical protein compare
HMPREF1058_RS05030 +0.9 3.5 M23 family metallopeptidase compare
HMPREF1058_RS11830 +0.9 6.5 hypothetical protein compare
HMPREF1058_RS00465 +0.9 3.0 translation initiation factor compare
HMPREF1058_RS10975 +0.9 3.5 serine acetyltransferase compare
HMPREF1058_RS14505 +0.9 1.4 mechanosensitive ion channel compare
HMPREF1058_RS05955 +0.9 3.8 hypothetical protein compare
HMPREF1058_RS16965 +0.9 2.6 response regulator compare
HMPREF1058_RS13020 +0.9 2.5 hypothetical protein compare
HMPREF1058_RS18890 +0.9 2.7 DUF3127 domain-containing protein compare
HMPREF1058_RS07985 +0.9 1.8 endonuclease/exonuclease/phosphatase family protein compare
HMPREF1058_RS03885 +0.9 4.2 insulinase family protein compare
HMPREF1058_RS01225 +0.9 2.5 HAD family phosphatase compare
HMPREF1058_RS04115 +0.9 1.3 CinA family protein compare
HMPREF1058_RS03450 +0.9 0.9 hypothetical protein compare
HMPREF1058_RS02530 +0.9 1.9 GxxExxY protein compare
HMPREF1058_RS13065 +0.9 4.9 hypothetical protein compare
HMPREF1058_RS18070 +0.9 3.6 ABC transporter permease compare
HMPREF1058_RS01235 +0.9 3.8 phosphoserine phosphatase SerB compare
HMPREF1058_RS21140 +0.9 1.6 ISAs1 family transposase compare
HMPREF1058_RS06470 +0.9 3.0 hypothetical protein compare
HMPREF1058_RS11585 +0.9 5.4 hypothetical protein compare
HMPREF1058_RS21045 +0.9 2.0 hypothetical protein compare
HMPREF1058_RS05940 +0.9 2.1 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
HMPREF1058_RS10650 +0.9 2.5 hypothetical protein compare
HMPREF1058_RS02520 +0.9 3.6 urocanate hydratase compare
HMPREF1058_RS14065 +0.9 4.6 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS18910 +0.9 1.6 hypothetical protein compare
HMPREF1058_RS00470 +0.9 3.2 redox-sensing transcriptional repressor Rex compare
HMPREF1058_RS05695 +0.9 1.5 helix-turn-helix domain-containing protein compare
HMPREF1058_RS17860 +0.9 1.9 oligopeptide transporter, OPT family compare
HMPREF1058_RS12505 +0.9 0.6 RNA polymerase factor sigma-54 compare
HMPREF1058_RS00390 +0.8 1.7 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS02340 +0.8 4.5 RNA degradosome polyphosphate kinase compare
HMPREF1058_RS08920 +0.8 2.9 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS01500 +0.8 2.0 hypothetical protein compare
HMPREF1058_RS10250 +0.8 4.1 hypothetical protein compare
HMPREF1058_RS08400 +0.8 3.7 family 43 glycosylhydrolase compare
HMPREF1058_RS17035 +0.8 3.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS08335 +0.8 3.9 acyloxyacyl hydrolase compare
HMPREF1058_RS10310 +0.8 3.9 hypothetical protein compare
HMPREF1058_RS02485 +0.8 3.8 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS17745 +0.8 2.4 hypothetical protein compare
HMPREF1058_RS04555 +0.8 1.7 YqaJ viral recombinase family protein compare
HMPREF1058_RS0119835 +0.8 2.4 type II toxin-antitoxin system HipA family toxin compare
HMPREF1058_RS10810 +0.8 2.9 TonB-dependent receptor compare
HMPREF1058_RS03940 +0.8 3.5 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS20195 +0.8 3.0 hypothetical protein compare
HMPREF1058_RS10510 +0.8 3.2 virulence RhuM family protein compare
HMPREF1058_RS06160 +0.8 2.0 formyltetrahydrofolate deformylase compare
HMPREF1058_RS18610 +0.8 2.2 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS07055 +0.8 4.7 hypothetical protein compare
HMPREF1058_RS07545 +0.8 0.9 hypothetical protein compare
HMPREF1058_RS05215 +0.8 2.6 GtrA family protein compare
HMPREF1058_RS0119820 +0.8 1.3 hypothetical protein compare
HMPREF1058_RS09490 +0.8 4.1 adenosine kinase compare
HMPREF1058_RS05660 +0.8 2.0 hypothetical protein compare
HMPREF1058_RS20490 +0.8 1.3 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS12995 +0.8 1.3 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono across organisms