Experiment set4S44 for Rhodopseudomonas palustris CGA009

Compare to:

PM with Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
TX73_024775 -3.7 -14.2 O-succinylhomoserine sulfhydrylase compare
TX73_019145 -3.6 -7.6 prephenate dehydratase compare
TX73_001320 -3.5 -17.6 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_019180 -3.3 -3.1 methionine synthase compare
TX73_005530 -3.2 -4.3 FAD-binding oxidoreductase compare
TX73_015855 -3.0 -2.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_019175 -2.9 -6.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_013960 -2.8 -4.9 pyridoxine 5'-phosphate synthase compare
TX73_024230 -2.7 -6.2 trehalose-phosphatase compare
TX73_008015 -2.3 -2.2 ribulose bisphosphate carboxylase small subunit compare
TX73_010535 -2.2 -11.8 biotin synthase BioB compare
TX73_000395 -2.1 -2.0 nucleotidyltransferase family protein compare
TX73_018875 -2.1 -9.4 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
TX73_012525 -2.0 -5.6 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
TX73_014855 -2.0 -12.4 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
TX73_022040 -1.8 -9.6 proton-conducting transporter membrane subunit compare
TX73_017010 -1.7 -1.8 TetR/AcrR family transcriptional regulator compare
TX73_013215 -1.6 -5.6 glycosyltransferase family 39 protein compare
TX73_022055 -1.6 -6.0 NADH-quinone oxidoreductase subunit NuoI compare
TX73_014840 -1.6 -11.1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase compare
TX73_021840 -1.6 -6.7 nitrite/sulfite reductase compare
TX73_022035 -1.6 -9.2 NADH-quinone oxidoreductase subunit M compare
TX73_014835 -1.5 -11.6 dihydrolipoyl dehydrogenase compare
TX73_008010 -1.5 -3.8 form I ribulose bisphosphate carboxylase large subunit compare
TX73_002745 -1.5 -7.0 polyhydroxyalkanoate synthesis repressor PhaR compare
TX73_007730 -1.5 -8.2 DUF3422 domain-containing protein compare
TX73_015670 -1.4 -6.9 potassium transporter Kup compare
TX73_021835 -1.4 -4.7 DUF934 domain-containing protein compare
TX73_005330 -1.4 -3.7 electron transfer flavoprotein-ubiquinone oxidoreductase compare
TX73_015405 -1.4 -5.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
TX73_022030 -1.4 -7.6 proton-conducting transporter membrane subunit compare
TX73_022060 -1.4 -6.6 NADH-quinone oxidoreductase subunit NuoH compare
TX73_008020 -1.4 -3.6 CbbX protein compare
TX73_022015 -1.4 -5.8 response regulator compare
TX73_020625 -1.3 -5.0 NAD-dependent epimerase compare
TX73_022075 -1.3 -4.8 NADH-quinone oxidoreductase subunit NuoE compare
TX73_015410 -1.3 -3.3 dethiobiotin synthase compare
TX73_022070 -1.3 -7.2 NADH-quinone oxidoreductase subunit F compare
TX73_022080 -1.3 -8.3 NADH-quinone oxidoreductase subunit C/D compare
TX73_021975 -1.3 -4.6 CBS domain-containing protein compare
TX73_018540 -1.3 -9.5 phosphomethylpyrimidine synthase ThiC compare
TX73_014850 -1.3 -8.7 pyruvate dehydrogenase complex E1 component subunit beta compare
TX73_021865 -1.3 -1.5 hypothetical protein compare
TX73_007900 -1.2 -9.1 transcriptional regulator PpsR compare
TX73_000270 -1.2 -4.6 PTS IIA-like nitrogen regulatory protein PtsN compare
TX73_004835 -1.2 -5.9 tetratricopeptide repeat protein compare
TX73_021845 -1.2 -2.3 DUF2849 domain-containing protein compare
TX73_003880 -1.2 -3.5 phosphoadenylyl-sulfate reductase compare
TX73_023835 -1.1 -6.9 lipopolysaccharide biosynthesis protein compare
TX73_003890 -1.1 -7.5 adenylyl-sulfate kinase compare
TX73_001795 -1.1 -4.1 sulfate transporter family protein compare
TX73_002045 -1.1 -2.2 phosphatase PAP2 family protein compare
TX73_000090 -1.1 -4.4 cbb3-type cytochrome c oxidase subunit 3 compare
TX73_004430 -1.1 -6.7 metal ABC transporter permease compare
TX73_004440 -1.1 -7.4 GTP-binding protein compare
TX73_022050 -1.1 -4.0 NADH-quinone oxidoreductase subunit J compare
TX73_015770 -1.0 -7.7 RNA degradosome polyphosphate kinase compare
TX73_016270 -1.0 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
TX73_001720 -1.0 -3.1 nucleotide exchange factor GrpE compare
TX73_014045 -1.0 -6.7 arginyltransferase compare
TX73_013955 -1.0 -5.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
TX73_022085 -1.0 -4.1 NADH-quinone oxidoreductase subunit B compare
TX73_010135 -1.0 -2.6 TetR/AcrR family transcriptional regulator compare
TX73_009990 -1.0 -1.2 ATP-binding protein compare
TX73_010270 -1.0 -2.0 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_004425 -1.0 -6.3 zinc ABC transporter ATP-binding protein AztA compare
TX73_014430 -1.0 -1.9 DUF3309 family protein compare
TX73_003885 -1.0 -6.9 sulfate adenylyltransferase subunit 2 compare
TX73_018340 -1.0 -3.3 N-acetylmuramoyl-L-alanine amidase compare
TX73_012480 -1.0 -1.3 ABC transporter ATP-binding protein compare
TX73_022045 -1.0 -2.4 NADH-quinone oxidoreductase subunit NuoK compare
TX73_018330 -0.9 -3.4 hypothetical protein compare
TX73_006140 -0.9 -6.5 SDR family NAD(P)-dependent oxidoreductase compare
TX73_022090 -0.9 -2.9 NADH-quinone oxidoreductase subunit A compare
TX73_003060 -0.9 -1.8 [protein-PII] uridylyltransferase compare
TX73_000100 -0.9 -7.8 cytochrome-c oxidase, cbb3-type subunit I compare
TX73_013965 -0.9 -1.0 holo-ACP synthase compare
TX73_000075 -0.9 -4.3 FixH family protein compare
TX73_005960 -0.9 -3.3 exodeoxyribonuclease VII large subunit compare
TX73_024595 -0.9 -1.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
TX73_000065 -0.8 -2.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
TX73_022065 -0.8 -5.3 NADH-quinone oxidoreductase subunit NuoG compare
TX73_018250 -0.8 -1.3 UDP-3-O-acyl-N-acetylglucosamine deacetylase compare
TX73_018520 -0.8 -0.8 FAD-dependent oxidoreductase compare
TX73_000070 -0.8 -6.4 cation-translocating P-type ATPase compare
TX73_015245 -0.7 -1.1 NADH-quinone oxidoreductase subunit NuoI compare
TX73_004435 -0.7 -4.1 metal ABC transporter substrate-binding protein compare
TX73_017350 -0.7 -2.5 sugar transferase compare
TX73_008365 -0.7 -1.2 chemotaxis protein CheW compare
TX73_001065 -0.7 -0.7 heme exporter protein CcmD compare
TX73_014965 -0.7 -4.2 preprotein translocase subunit SecG compare
TX73_016990 -0.7 -3.7 histidine phosphatase family protein compare
TX73_001460 -0.7 -0.8 outer membrane lipoprotein carrier protein LolA compare
TX73_000095 -0.7 -3.6 cytochrome-c oxidase, cbb3-type subunit II compare
TX73_018925 -0.7 -2.0 DUF6496 domain-containing protein compare
TX73_001365 -0.6 -4.9 RuBisCO large subunit C-terminal-like domain-containing protein compare
TX73_014645 -0.6 -5.1 phytoene/squalene synthase family protein compare
TX73_022840 -0.6 -2.7 carbohydrate ABC transporter permease compare
TX73_013240 -0.6 -3.4 amino acid ABC transporter substrate-binding protein compare
TX73_006455 -0.6 -1.5 adenosylcobinamide-GDP ribazoletransferase compare
TX73_004445 -0.6 -4.9 WD40 repeat domain-containing protein compare
TX73_017855 -0.6 -2.5 hypothetical protein compare
TX73_010115 -0.6 -1.6 hypothetical protein compare
TX73_006730 -0.6 -1.4 carboxymuconolactone decarboxylase family protein compare
TX73_005115 -0.6 -2.6 cysteine-rich small domain-containing protein compare
TX73_003870 -0.6 -2.6 sulfate ABC transporter permease subunit CysT compare
TX73_010065 -0.6 -1.7 DUF1656 domain-containing protein compare
TX73_021850 -0.6 -3.4 siroheme synthase CysG compare
TX73_020595 -0.6 -1.1 hypothetical protein compare
TX73_020410 -0.6 -2.8 histidine phosphatase family protein compare
TX73_000085 -0.6 -3.6 cytochrome-c oxidase, cbb3-type subunit III compare
TX73_011325 -0.6 -4.2 Ppx/GppA phosphatase family protein compare
TX73_019515 -0.6 -2.8 TetR/AcrR family transcriptional regulator compare
TX73_011440 -0.6 -1.5 hypothetical protein compare
TX73_017130 -0.6 -1.2 hypothetical protein compare
TX73_022290 -0.6 -1.0 hypothetical protein compare
TX73_018465 -0.5 -1.9 DUF3606 domain-containing protein compare
TX73_021900 -0.5 -3.4 sigma-70 family RNA polymerase sigma factor compare
TX73_010305 -0.5 -2.9 GNAT family N-acetyltransferase compare
TX73_003860 -0.5 -2.7 sulfate ABC transporter ATP-binding protein compare
TX73_025105 -0.5 -2.8 hypothetical protein compare
TX73_020970 -0.5 -2.3 hypothetical protein compare
TX73_016370 -0.5 -3.4 DUF2384 domain-containing protein compare
TX73_008175 -0.5 -4.0 glutamate racemase compare
TX73_018335 -0.5 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
TX73_003875 -0.5 -3.0 sulfate ABC transporter substrate-binding protein compare
TX73_023080 -0.5 -1.9 hypothetical protein compare
TX73_013225 -0.5 -1.2 glycosyltransferase family 2 protein compare
TX73_022735 -0.5 -1.9 hypothetical protein compare
TX73_004620 -0.5 -2.2 DUF459 domain-containing protein compare
TX73_017425 -0.5 -1.2 sodium:solute symporter compare
TX73_011445 -0.5 -2.9 WYL domain-containing protein compare
TX73_018185 -0.5 -1.7 hypothetical protein compare
TX73_010245 -0.5 -1.2 AraC family transcriptional regulator compare
TX73_022515 -0.5 -1.5 DUF1902 domain-containing protein compare
TX73_015380 -0.5 -4.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
TX73_015500 -0.5 -1.8 hypothetical protein compare
TX73_006090 -0.5 -2.2 CoA pyrophosphatase compare
TX73_021785 -0.5 -1.7 PAS domain-containing protein compare
TX73_005760 -0.5 -3.8 EAL domain-containing protein compare
TX73_001535 -0.5 -4.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
TX73_017145 -0.5 -2.0 hypothetical protein compare
TX73_024830 -0.5 -1.0 phosphate ABC transporter ATP-binding protein PstB compare
TX73_024675 -0.5 -1.0 FAD-binding protein compare
TX73_017780 -0.5 -1.7 hypothetical protein compare
TX73_005985 -0.5 -1.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
TX73_021000 -0.5 -2.9 NAD-dependent epimerase/dehydratase family protein compare
TX73_007490 -0.5 -2.3 VWA domain-containing protein compare
TX73_011630 -0.5 -2.4 DUF6117 family protein compare
TX73_019665 -0.4 -2.3 XdhC family protein compare
TX73_009785 -0.4 -2.1 phage major tail protein, TP901-1 family compare
TX73_025090 -0.4 -1.4 DUF3551 domain-containing protein compare
TX73_008615 -0.4 -1.9 hybrid sensor histidine kinase/response regulator compare
TX73_015865 -0.4 -1.6 alcohol dehydrogenase compare
TX73_012935 -0.4 -1.7 LL-diaminopimelate aminotransferase compare
TX73_008350 -0.4 -2.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
TX73_024670 -0.4 -2.0 3-hydroxybutyryl-CoA dehydrogenase compare
TX73_002805 -0.4 -0.8 disulfide bond formation protein B compare
TX73_003520 -0.4 -2.7 TetR/AcrR family transcriptional regulator compare
TX73_000550 -0.4 -2.4 zinc-binding dehydrogenase compare
TX73_020440 -0.4 -3.8 hypothetical protein compare
TX73_006105 -0.4 -1.8 DUF2158 domain-containing protein compare
TX73_021480 -0.4 -1.6 DUF1858 domain-containing protein compare
TX73_002300 -0.4 -1.5 helix-turn-helix domain-containing protein compare
TX73_022860 -0.4 -1.8 glycerol-3-phosphate dehydrogenase compare
TX73_013925 -0.4 -1.8 large conductance mechanosensitive channel protein MscL compare
TX73_008970 -0.4 -2.7 NAD(P)-dependent oxidoreductase compare
TX73_019195 -0.4 -1.5 hypothetical protein compare
TX73_006785 -0.4 -1.3 DUF3551 domain-containing protein compare
TX73_013835 -0.4 -1.5 heat shock protein HspQ compare
TX73_020215 -0.4 -3.1 flagellar basal-body rod protein FlgF compare
TX73_004275 -0.4 -2.0 organic hydroperoxide resistance protein compare
TX73_007885 -0.4 -2.1 tryptophan-rich sensory protein compare
TX73_010370 -0.4 -2.1 rhodanese-like domain-containing protein compare
TX73_009050 -0.4 -1.7 DUF6285 domain-containing protein compare
TX73_011145 -0.4 -1.9 helix-turn-helix domain-containing protein compare
TX73_017125 -0.4 -1.6 transglutaminase family protein compare
TX73_001680 -0.4 -3.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
TX73_012115 -0.4 -2.1 GntR family transcriptional regulator compare
TX73_003865 -0.4 -2.1 sulfate ABC transporter permease subunit CysW compare
TX73_006095 -0.4 -1.0 DUF6111 family protein compare
TX73_008130 -0.4 -0.8 TIGR01620 family protein compare
TX73_006830 -0.4 -1.4 cupin domain-containing protein compare
TX73_016275 -0.4 -1.4 ATP-dependent Clp protease adapter ClpS compare
TX73_001830 -0.4 -3.5 glycosyltransferase family 39 protein compare
TX73_014075 -0.4 -2.2 hypothetical protein compare
TX73_005895 -0.4 -2.3 glycosyltransferase family 2 protein compare
TX73_010675 -0.4 -0.7 DUF378 domain-containing protein compare
TX73_004190 -0.4 -2.9 sulfite exporter TauE/SafE family protein compare
TX73_006615 -0.4 -1.0 hypothetical protein compare
TX73_023530 -0.4 -2.3 low molecular weight phosphatase family protein compare
TX73_002530 -0.4 -3.4 M48 family metalloprotease compare
TX73_007005 -0.4 -1.3 ABC transporter ATP-binding protein compare
TX73_014735 -0.4 -1.1 hypothetical protein compare
TX73_024955 -0.4 -3.3 MFS transporter compare
TX73_006840 -0.4 -1.3 tyrosine-type recombinase/integrase compare
TX73_015825 -0.4 -1.1 DNA polymerase III subunit chi compare
TX73_014315 -0.4 -1.6 O-acetylhomoserine aminocarboxypropyltransferase compare
TX73_016585 -0.4 -1.9 ATPase compare
TX73_005055 -0.4 -2.0 IclR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Rhodopseudomonas palustris CGA009 in carbon source experiments

For carbon source Sodium succinate dibasic hexahydrate across organisms