Experiment set4S406 for Enterobacter sp. TBS_079

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Motility test in 1X LB; 1 day; outer cut; 0.3% agar

Group: motility; outer cut
Media: LB + Agar (3 g/L)
Culturing: Enterobacter_TBS_079_ML3, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Robin on 3/9/24
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 40 genes in this experiment

For motility; outer cut Agar in Enterobacter sp. TBS_079

For motility; outer cut Agar across organisms

SEED Subsystems

Subsystem #Specific
Flagellum 10
Flagellar motility 4
Bacterial Chemotaxis 3
Bacterial hemoglobins 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
KDO2-Lipid A biosynthesis 1
Lysine Biosynthesis DAP Pathway 1
Orphan regulatory proteins 1
Proteolysis in bacteria, ATP-dependent 1
Purine conversions 1
Threonine and Homoserine Biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
ethanol degradation I 2 2 2
acetaldehyde biosynthesis I 1 1 1
pyruvate fermentation to ethanol I 3 3 2
pyruvate fermentation to ethanol III 3 3 2
xanthine and xanthosine salvage 2 2 1
pyruvate fermentation to ethanol II 2 2 1
guanine and guanosine salvage I 2 2 1
L-threonine degradation IV 2 2 1
guanine and guanosine salvage II 2 2 1
ethanolamine utilization 5 4 2
acetylene degradation (anaerobic) 5 4 2
ethanol degradation II 3 3 1
2-deoxy-α-D-ribose 1-phosphate degradation 3 3 1
2-deoxy-D-ribose degradation I 3 3 1
L-homoserine biosynthesis 3 3 1
superpathway of guanine and guanosine salvage 3 3 1
adenine salvage 3 3 1
L-leucine degradation III 3 2 1
L-isoleucine degradation II 3 2 1
L-methionine degradation III 3 2 1
L-valine degradation II 3 2 1
2-hydroxypenta-2,4-dienoate degradation 3 1 1
sulfoacetaldehyde degradation IV 3 1 1
2-aminoethylphosphonate degradation I 3 1 1
adenine and adenosine salvage III 4 4 1
phytol degradation 4 3 1
dipicolinate biosynthesis 4 3 1
L-tyrosine degradation III 4 2 1
salidroside biosynthesis 4 2 1
L-phenylalanine degradation III 4 2 1
L-methionine biosynthesis IV 4 2 1
spermidine biosynthesis II 4 2 1
superpathway of fermentation (Chlamydomonas reinhardtii) 9 9 2
pyruvate fermentation to isobutanol (engineered) 5 4 1
ectoine biosynthesis 5 3 1
(S)-propane-1,2-diol degradation 5 3 1
phenylethanol biosynthesis 5 2 1
catechol degradation I (meta-cleavage pathway) 5 1 1
superpathway of pyrimidine deoxyribonucleosides degradation 6 6 1
superpathway of L-threonine biosynthesis 6 6 1
norspermidine biosynthesis 6 4 1
triethylamine degradation 6 1 1
superpathway of Clostridium acetobutylicum solventogenic fermentation 13 6 2
noradrenaline and adrenaline degradation 13 4 2
superpathway of purine deoxyribonucleosides degradation 7 7 1
L-lysine biosynthesis VI 7 6 1
3-methylbutanol biosynthesis (engineered) 7 6 1
L-lysine biosynthesis III 7 6 1
serotonin degradation 7 3 1
3-dehydroquinate biosynthesis II (archaea) 7 3 1
cremeomycin biosynthesis 7 2 1
toluene degradation V (aerobic) (via toluene-cis-diol) 7 1 1
toluene degradation I (aerobic) (via o-cresol) 7 1 1
catechol degradation II (meta-cleavage pathway) 7 1 1
mixed acid fermentation 16 16 2
superpathway of L-homoserine and L-methionine biosynthesis 8 8 1
superpathway of polyamine biosynthesis III 8 4 1
butanol and isobutanol biosynthesis (engineered) 8 3 1
grixazone biosynthesis 8 2 1
3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation 8 2 1
p-cumate degradation 8 1 1
superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation 17 8 2
superpathway of L-methionine biosynthesis (transsulfuration) 9 9 1
superpathway of S-adenosyl-L-methionine biosynthesis 9 9 1
L-lysine biosynthesis I 9 9 1
heterolactic fermentation 18 15 2
L-lysine biosynthesis II 9 6 1
hexitol fermentation to lactate, formate, ethanol and acetate 19 18 2
meta cleavage pathway of aromatic compounds 10 1 1
superpathway of N-acetylneuraminate degradation 22 19 2
p-cymene degradation 11 1 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 10 1
chorismate biosynthesis II (archaea) 12 8 1
peptidoglycan maturation (meso-diaminopimelate containing) 12 6 1
naphthalene degradation to acetyl-CoA 12 2 1
L-tryptophan degradation XII (Geobacillus) 12 1 1
L-tryptophan degradation IX 12 1 1
superpathway of L-isoleucine biosynthesis I 13 13 1
L-tryptophan degradation V (side chain pathway) 13 1 1
toluene degradation IV (aerobic) (via catechol) 13 1 1
superpathway of purine nucleotide salvage 14 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 18 1
superpathway of L-threonine metabolism 18 16 1
mandelate degradation to acetyl-CoA 18 3 1
superpathway of anaerobic sucrose degradation 19 17 1
aspartate superpathway 25 24 1
platensimycin biosynthesis 26 6 1
superpathway of aerobic toluene degradation 30 4 1
superpathway of aromatic compound degradation via 3-oxoadipate 35 7 1
superpathway of aromatic compound degradation via 2-hydroxypentadienoate 42 6 1