Experiment set4S405 for Enterobacter sp. TBS_079

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Motility test in 1X LB; 1 day; outer cut; 0.3% agar

Group: motility; outer cut
Media: LB + Agar (3 g/L)
Culturing: Enterobacter_TBS_079_ML3, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Robin on 3/9/24
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 54 genes in this experiment

For motility; outer cut Agar in Enterobacter sp. TBS_079

For motility; outer cut Agar across organisms

SEED Subsystems

Subsystem #Specific
Flagellum 27
Flagellar motility 12
Bacterial Chemotaxis 9
Two-component regulatory systems in Campylobacter 3
Flagellum in Campylobacter 2
Bacterial hemoglobins 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
KDO2-Lipid A biosynthesis 1
Lysine Biosynthesis DAP Pathway 1
Proteolysis in bacteria, ATP-dependent 1
Purine conversions 1
Threonine and Homoserine Biosynthesis 1
Transcription initiation, bacterial sigma factors 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
guanine and guanosine salvage II 2 2 1
xanthine and xanthosine salvage 2 2 1
guanine and guanosine salvage I 2 2 1
adenine salvage 3 3 1
superpathway of guanine and guanosine salvage 3 3 1
L-homoserine biosynthesis 3 3 1
adenine and adenosine salvage III 4 4 1
dipicolinate biosynthesis 4 3 1
L-methionine biosynthesis IV 4 2 1
spermidine biosynthesis II 4 2 1
ectoine biosynthesis 5 3 1
superpathway of L-threonine biosynthesis 6 6 1
norspermidine biosynthesis 6 4 1
L-lysine biosynthesis VI 7 6 1
L-lysine biosynthesis III 7 6 1
3-dehydroquinate biosynthesis II (archaea) 7 3 1
cremeomycin biosynthesis 7 2 1
superpathway of L-homoserine and L-methionine biosynthesis 8 8 1
superpathway of polyamine biosynthesis III 8 4 1
grixazone biosynthesis 8 2 1
superpathway of S-adenosyl-L-methionine biosynthesis 9 9 1
superpathway of L-methionine biosynthesis (transsulfuration) 9 9 1
L-lysine biosynthesis I 9 9 1
L-lysine biosynthesis II 9 6 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 10 1
chorismate biosynthesis II (archaea) 12 8 1
superpathway of L-isoleucine biosynthesis I 13 13 1
superpathway of purine nucleotide salvage 14 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 18 1
aspartate superpathway 25 24 1
platensimycin biosynthesis 26 6 1