Experiment set4S181 for Rahnella sp. WP5

Compare to:

NL-CCM; vial

200 most important genes:

  gene name fitness t score description  
EX31_RS02385 -3.9 -2.1 hypothetical protein compare
EX31_RS14340 -2.3 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS05825 -2.3 -2.2 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS14405 -2.1 -2.3 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS11525 -1.7 -3.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS23480 -1.6 -3.6 Tol-Pal system protein TolQ compare
EX31_RS02520 -1.6 -1.8 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS11540 -1.5 -3.6 dCTP deaminase compare
EX31_RS07415 -1.5 -1.7 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS22245 -1.5 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS22250 -1.5 -3.2 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS25725 -1.4 -1.6 hypothetical protein compare
EX31_RS23320 -1.4 -3.6 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS14325 -1.3 -8.8 envelope stress sensor histidine kinase CpxA compare
EX31_RS09170 -1.2 -2.1 ABC transporter ATP-binding protein compare
EX31_RS06055 -1.2 -2.2 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS25300 -1.2 -1.2 YqaE/Pmp3 family membrane protein compare
EX31_RS12875 -1.2 -1.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS20495 -1.1 -5.0 outer membrane protein assembly factor BamB compare
EX31_RS04645 -1.1 -1.1 DUF2559 family protein compare
EX31_RS18445 -1.1 -2.2 DUF2732 domain-containing protein compare
EX31_RS18255 -1.1 -2.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS07785 -1.1 -1.3 carbon storage regulator CsrA compare
EX31_RS23490 -1.0 -1.8 cell envelope integrity protein TolA compare
EX31_RS02530 -1.0 -1.5 ABC transporter ATP-binding protein compare
EX31_RS15880 -1.0 -4.5 nitrogen regulation protein NR(I) compare
EX31_RS18540 -1.0 -0.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS20735 -1.0 -2.1 exodeoxyribonuclease V subunit beta compare
EX31_RS12400 -0.9 -1.8 RNA polymerase factor sigma-54 compare
EX31_RS14730 -0.9 -0.9 DUF2756 domain-containing protein compare
EX31_RS07430 -0.9 -2.6 transporter substrate-binding domain-containing protein compare
EX31_RS15870 -0.9 -2.3 glutamate--ammonia ligase compare
EX31_RS03570 -0.9 -1.3 DUF721 domain-containing protein compare
EX31_RS23965 -0.9 -2.8 hypothetical protein compare
EX31_RS11105 -0.9 -2.7 cytosine deaminase compare
EX31_RS06620 -0.8 -2.2 electron transport complex subunit RsxA compare
EX31_RS07010 -0.8 -3.0 ABC transporter ATP-binding protein compare
EX31_RS25365 -0.8 -0.8 50S ribosomal protein L31 compare
EX31_RS25645 -0.8 -1.6 K(+)-transporting ATPase subunit F compare
EX31_RS18570 -0.8 -1.1 cold shock-like protein CspD compare
EX31_RS02740 -0.8 -1.7 oxidative damage protection protein compare
EX31_RS10135 -0.7 -2.2 ROK family transcriptional regulator compare
EX31_RS06690 -0.7 -2.0 hypothetical protein compare
EX31_RS18040 -0.7 -5.5 porin OmpA compare
EX31_RS09165 -0.7 -1.9 FadR family transcriptional regulator compare
EX31_RS13480 -0.7 -3.4 site-specific tyrosine recombinase XerD compare
EX31_RS25895 -0.7 -1.6 DinI-like family protein compare
EX31_RS10340 -0.7 -1.7 GNAT family N-acetyltransferase compare
EX31_RS09670 -0.7 -2.0 bleomycin resistance protein compare
EX31_RS01955 -0.7 -2.3 DUF2931 family protein compare
EX31_RS17465 -0.7 -2.1 hypothetical protein compare
EX31_RS19845 -0.7 -1.4 DNA polymerase II small subunit compare
EX31_RS15875 -0.7 -5.2 nitrogen regulation protein NR(II) compare
EX31_RS09500 -0.7 -2.5 hypothetical protein compare
EX31_RS17295 -0.6 -1.7 hypothetical protein compare
EX31_RS23485 -0.6 -1.1 colicin uptake protein TolR compare
EX31_RS09375 -0.6 -1.7 gamma-glutamylcyclotransferase compare
EX31_RS09640 -0.6 -3.2 30S ribosomal protein S6--L-glutamate ligase compare
EX31_RS20940 -0.6 -2.3 AlpA family transcriptional regulator compare
EX31_RS20620 -0.6 -2.6 two-component system QseEF-associated lipoprotein QseG compare
EX31_RS26065 -0.6 -1.7 IS630 family transposase compare
EX31_RS11045 -0.6 -1.3 NADP-dependent oxidoreductase compare
EX31_RS07590 -0.6 -1.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS01595 -0.6 -0.8 phage minor tail protein G compare
EX31_RS11470 -0.6 -1.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS03330 -0.6 -1.4 hypoxanthine phosphoribosyltransferase compare
EX31_RS14610 -0.6 -1.4 twin-arginine translocase subunit TatE compare
EX31_RS12510 -0.6 -4.3 FAD-dependent oxidoreductase compare
EX31_RS22260 -0.6 -2.4 DNA-binding protein HU-beta compare
EX31_RS09960 -0.6 -2.5 glutamine amidotransferase compare
EX31_RS09600 -0.6 -1.3 flagellar type III secretion system protein FliR compare
EX31_RS23500 -0.6 -1.6 peptidoglycan-associated lipoprotein Pal compare
EX31_RS16330 -0.6 -2.7 endoribonuclease MazF compare
EX31_RS07135 -0.6 -1.0 hypothetical protein compare
EX31_RS06065 -0.6 -3.1 phosphate ABC transporter permease PstC compare
EX31_RS17265 -0.6 -2.5 hypothetical protein compare
EX31_RS18525 -0.6 -1.4 DNA translocase FtsK compare
EX31_RS08140 -0.6 -0.9 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS06800 -0.6 -1.6 ABC transporter permease compare
EX31_RS23160 -0.6 -1.7 amino acid ABC transporter ATP-binding protein compare
EX31_RS02225 -0.5 -1.7 hypothetical protein compare
EX31_RS04520 -0.5 -3.1 YheU family protein compare
EX31_RS04325 -0.5 -0.6 hypothetical protein compare
EX31_RS17710 -0.5 -2.2 hypothetical protein compare
EX31_RS13415 -0.5 -2.2 Lrp/AsnC family transcriptional regulator compare
EX31_RS25410 -0.5 -0.8 transposase compare
EX31_RS04295 -0.5 -1.7 hypothetical protein compare
EX31_RS04035 -0.5 -3.8 phosphoserine phosphatase compare
EX31_RS23495 -0.5 -2.0 Tol-Pal system protein TolB compare
EX31_RS23125 -0.5 -1.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS06925 -0.5 -1.6 transglycosylase SLT domain-containing protein compare
EX31_RS05255 -0.5 -1.0 hypothetical protein compare
EX31_RS11435 -0.5 -2.2 ATP phosphoribosyltransferase compare
EX31_RS12030 -0.5 -1.5 hypothetical protein compare
EX31_RS26005 -0.5 -1.6 transposase compare
EX31_RS09815 -0.5 -1.5 2-keto-3-deoxygluconate transporter compare
EX31_RS07445 -0.5 -1.6 amino acid ABC transporter permease compare
EX31_RS23470 -0.5 -0.9 cyd operon protein YbgE compare
EX31_RS03790 -0.5 -0.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS14180 -0.5 -4.0 argininosuccinate lyase compare
EX31_RS25665 -0.5 -1.0 DUF2502 domain-containing protein compare
EX31_RS06565 -0.5 -1.4 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
EX31_RS03890 -0.5 -2.0 Na+/H+ antiporter NhaA compare
EX31_RS25530 -0.5 -1.8 hypothetical protein compare
EX31_RS10020 -0.5 -1.1 YciI family protein compare
EX31_RS07555 -0.5 -1.3 glucose 1-dehydrogenase compare
EX31_RS25605 -0.5 -1.6 transposase compare
EX31_RS22275 -0.5 -1.7 YbgC/FadM family acyl-CoA thioesterase compare
EX31_RS11675 -0.5 -0.8 Holliday junction branch migration protein RuvA compare
EX31_RS14410 -0.5 -4.2 glycosyltransferase family 9 protein compare
EX31_RS02470 -0.5 -1.8 alpha/beta fold hydrolase compare
EX31_RS13170 -0.5 -2.0 precorrin-2 dehydrogenase compare
EX31_RS06990 -0.5 -1.6 GntR family transcriptional regulator compare
EX31_RS08660 -0.5 -2.1 peroxide/acid stress response protein YhcN compare
EX31_RS06485 -0.5 -1.1 YdbL family protein compare
EX31_RS11255 -0.5 -2.9 CidA/LrgA family protein compare
EX31_RS05730 -0.5 -1.4 isochorismatase family protein compare
EX31_RS09975 -0.5 -2.5 tryptophan synthase subunit beta compare
EX31_RS24265 -0.5 -1.7 secY/secA suppressor protein compare
EX31_RS20810 -0.5 -2.0 DUF1471 domain-containing protein compare
EX31_RS01305 -0.5 -1.2 trehalose-phosphatase compare
EX31_RS02590 -0.4 -2.5 nucleoside hydrolase compare
EX31_RS20670 -0.4 -0.5 RNA chaperone/antiterminator CspA compare
EX31_RS26000 -0.4 -1.3 GntR family transcriptional regulator compare
EX31_RS19405 -0.4 -0.8 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS16690 -0.4 -1.6 CoA transferase compare
EX31_RS22270 -0.4 -0.6 competence protein ComEA compare
EX31_RS00380 -0.4 -1.4 ABC transporter ATP-binding protein compare
EX31_RS01695 -0.4 -0.7 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS05245 -0.4 -1.2 PTS sugar transporter subunit IIB compare
EX31_RS09210 -0.4 -1.3 hypothetical protein compare
EX31_RS07280 -0.4 -1.5 cytochrome c compare
EX31_RS06070 -0.4 -2.4 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS01290 -0.4 -1.3 LysR family transcriptional regulator compare
EX31_RS00570 -0.4 -2.6 UbiX family flavin prenyltransferase compare
EX31_RS18625 -0.4 -1.2 heavy metal-binding domain-containing protein compare
EX31_RS00540 -0.4 -1.6 pentapeptide MXKDX repeat protein compare
EX31_RS10040 -0.4 -1.3 YciU family protein compare
EX31_RS02525 -0.4 -2.5 ABC transporter permease compare
EX31_RS15155 -0.4 -0.8 diaminopimelate epimerase compare
EX31_RS09685 -0.4 -1.5 GNAT family N-acetyltransferase compare
EX31_RS22800 -0.4 -1.2 ArsC family reductase compare
EX31_RS20865 -0.4 -1.1 bacteriocin immunity protein compare
EX31_RS17460 -0.4 -1.2 putative selenoprotein compare
EX31_RS14320 -0.4 -0.8 envelope stress response regulator transcription factor CpxR compare
EX31_RS21470 -0.4 -2.6 phosphoglycerate dehydrogenase compare
EX31_RS16675 -0.4 -1.3 histidine utilization repressor compare
EX31_RS13975 -0.4 -1.9 EAL domain-containing protein compare
EX31_RS11550 -0.4 -2.8 iron-sulfur cluster carrier protein ApbC compare
EX31_RS23285 -0.4 -1.7 hypothetical protein compare
EX31_RS04710 -0.4 -1.2 adenine-specific DNA-methyltransferase compare
EX31_RS02285 -0.4 -1.4 PTS sugar transporter subunit IIB compare
EX31_RS25595 -0.4 -0.6 hypothetical protein compare
EX31_RS11465 -0.4 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS18760 -0.4 -2.0 DeoR/GlpR transcriptional regulator compare
EX31_RS16285 -0.4 -1.1 conjugal transfer protein compare
EX31_RS25295 -0.4 -1.1 GhoT/OrtT family toxin compare
EX31_RS13815 -0.4 -0.4 ribonuclease T compare
EX31_RS07225 -0.4 -1.3 membrane dipeptidase compare
EX31_RS02495 -0.4 -2.0 cytochrome P450 compare
EX31_RS13445 -0.4 -3.3 argininosuccinate synthase compare
EX31_RS00470 -0.4 -1.2 PadR family transcriptional regulator compare
EX31_RS04480 -0.4 -2.2 lysis protein compare
EX31_RS07525 -0.4 -0.9 sulfurtransferase compare
EX31_RS11610 -0.4 -1.7 SDR family oxidoreductase compare
EX31_RS13970 -0.4 -2.3 YdiU family protein compare
EX31_RS17820 -0.4 -2.0 DUF805 domain-containing protein compare
EX31_RS17290 -0.4 -1.5 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS00675 -0.4 -1.4 membrane dipeptidase compare
EX31_RS15535 -0.4 -1.4 LamB/YcsF family protein compare
EX31_RS19205 -0.4 -0.9 50S ribosomal protein L25 compare
EX31_RS09995 -0.4 -1.1 YkgJ family cysteine cluster protein compare
EX31_RS21145 -0.4 -1.3 oxalurate catabolism protein HpxZ compare
EX31_RS24485 -0.4 -2.0 DUF1425 domain-containing protein compare
EX31_RS15165 -0.4 -2.0 tyrosine recombinase XerC compare
EX31_RS07215 -0.4 -1.9 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
EX31_RS15810 -0.4 -1.7 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
EX31_RS18925 -0.4 -1.5 ABC transporter ATP-binding protein compare
EX31_RS03070 -0.4 -1.1 hypothetical protein compare
EX31_RS15905 -0.4 -2.9 DNA polymerase I compare
EX31_RS06060 -0.4 -1.1 phosphate ABC transporter permease PstA compare
EX31_RS09980 -0.4 -1.6 tryptophan synthase subunit alpha compare
EX31_RS24205 -0.4 -1.0 hypothetical protein compare
EX31_RS13915 -0.4 -2.0 hypothetical protein compare
EX31_RS22755 -0.4 -1.9 hypothetical protein compare
EX31_RS04600 -0.4 -1.5 ureidoglycolate lyase compare
EX31_RS01715 -0.4 -1.1 DNA replication protein compare
EX31_RS12145 -0.4 -2.6 amino acid ABC transporter permease compare
EX31_RS24395 -0.4 -1.2 ribonuclease E compare
EX31_RS07895 -0.4 -2.5 phosphoadenylyl-sulfate reductase compare
EX31_RS02195 -0.4 -1.0 MarR family transcriptional regulator compare
EX31_RS15525 -0.4 -1.2 nitrogen assimilation transcriptional regulator compare
EX31_RS12925 -0.4 -1.6 YaeP family protein compare
EX31_RS19925 -0.4 -1.8 4Fe-4S dicluster domain-containing protein compare
EX31_RS05785 -0.4 -1.1 superoxide dismutase [Mn] compare
EX31_RS21950 -0.4 -1.6 DUF1471 domain-containing protein compare
EX31_RS03190 -0.4 -1.3 hypothetical protein compare
EX31_RS02160 -0.4 -1.3 helix-turn-helix domain-containing protein compare
EX31_RS22300 -0.4 -1.7 Lrp/AsnC family transcriptional regulator compare
EX31_RS24190 -0.4 -1.6 DNA gyrase inhibitor compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm; vial experiments