Experiment set4S178 for Rahnella sp. WP5

Compare to:

NL-CCM_agar

200 most important genes:

  gene name fitness t score description  
EX31_RS22430 -3.3 -2.3 hemolysin expression modulator Hha compare
EX31_RS03220 -2.1 -2.3 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS02385 -1.8 -2.1 hypothetical protein compare
EX31_RS08745 -1.6 -1.9 50S ribosomal protein L9 compare
EX31_RS09580 -1.5 -2.3 flagellar motor switch protein FliN compare
EX31_RS22625 -1.4 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS26000 -1.3 -3.0 GntR family transcriptional regulator compare
EX31_RS08130 -1.3 -1.7 accessory factor UbiK family protein compare
EX31_RS13045 -1.3 -8.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS14340 -1.3 -1.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS15870 -1.2 -2.3 glutamate--ammonia ligase compare
EX31_RS10020 -1.1 -2.5 YciI family protein compare
EX31_RS10100 -1.1 -2.0 two-component system response regulator RssB compare
EX31_RS10535 -1.1 -2.0 GtrA family protein compare
EX31_RS11840 -1.1 -7.4 diacylglycerol kinase compare
EX31_RS01885 -1.1 -2.6 type IV secretion protein Rhs compare
EX31_RS04105 -1.1 -1.9 helix-turn-helix domain-containing protein compare
EX31_RS05825 -1.1 -1.4 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS09535 -1.1 -2.1 flagellar hook-basal body complex protein FliE compare
EX31_RS22750 -1.0 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS20735 -1.0 -2.7 exodeoxyribonuclease V subunit beta compare
EX31_RS12400 -1.0 -1.6 RNA polymerase factor sigma-54 compare
EX31_RS21020 -1.0 -1.7 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS18625 -1.0 -2.5 heavy metal-binding domain-containing protein compare
EX31_RS21470 -0.9 -5.6 phosphoglycerate dehydrogenase compare
EX31_RS09650 -0.9 -1.7 GrxA family glutaredoxin compare
EX31_RS07590 -0.9 -1.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS13815 -0.8 -0.7 ribonuclease T compare
EX31_RS07475 -0.8 -0.6 hypothetical protein compare
EX31_RS14405 -0.8 -1.6 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS23245 -0.8 -7.5 asparagine synthase B compare
EX31_RS13870 -0.8 -1.7 pyruvate kinase PykF compare
EX31_RS06340 -0.8 -2.2 thiol peroxidase compare
EX31_RS22800 -0.8 -1.1 ArsC family reductase compare
EX31_RS23130 -0.8 -2.0 ribosome silencing factor compare
EX31_RS20020 -0.8 -2.7 GNAT family N-acetyltransferase compare
EX31_RS23440 -0.7 -1.6 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS23320 -0.7 -3.0 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS11675 -0.7 -1.2 Holliday junction branch migration protein RuvA compare
EX31_RS24255 -0.7 -5.7 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS04035 -0.7 -5.0 phosphoserine phosphatase compare
EX31_RS23485 -0.7 -1.3 colicin uptake protein TolR compare
EX31_RS15880 -0.7 -4.0 nitrogen regulation protein NR(I) compare
EX31_RS00010 -0.7 -1.6 type II toxin-antitoxin system HipA family toxin compare
EX31_RS18540 -0.7 -0.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS25110 -0.7 -1.7 DUF2474 domain-containing protein compare
EX31_RS02360 -0.7 -1.8 CsbD family protein compare
EX31_RS05040 -0.6 -2.4 helix-turn-helix domain-containing protein compare
EX31_RS01805 -0.6 -0.7 hypothetical protein compare
EX31_RS02530 -0.6 -1.1 ABC transporter ATP-binding protein compare
EX31_RS21300 -0.6 -1.8 acyl carrier protein compare
EX31_RS17835 -0.6 -1.4 PTS transporter subunit EIIB compare
EX31_RS03775 -0.6 -2.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS22315 -0.6 -3.1 P-II family nitrogen regulator compare
EX31_RS00985 -0.6 -1.3 type VI secretion protein compare
EX31_RS14325 -0.6 -4.9 envelope stress sensor histidine kinase CpxA compare
EX31_RS11045 -0.6 -1.9 NADP-dependent oxidoreductase compare
EX31_RS15095 -0.6 -2.2 O-antigen assembly polymerase compare
EX31_RS22695 -0.6 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS22250 -0.6 -1.6 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS10955 -0.6 -1.3 AI-2E family transporter compare
EX31_RS03790 -0.6 -1.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS20840 -0.6 -0.9 hypothetical protein compare
EX31_RS10190 -0.6 -2.2 glycosyltransferase compare
EX31_RS06620 -0.6 -2.5 electron transport complex subunit RsxA compare
EX31_RS12385 -0.6 -4.8 RNase adapter RapZ compare
EX31_RS17290 -0.6 -2.0 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS21895 -0.6 -4.8 phosphoribosylformylglycinamidine synthase compare
EX31_RS10030 -0.6 -1.4 YciY family protein compare
EX31_RS06405 -0.6 -1.2 SDR family oxidoreductase compare
EX31_RS25910 -0.6 -0.8 hypothetical protein compare
EX31_RS24790 -0.6 -2.4 cation transporter compare
EX31_RS02515 -0.6 -1.0 PAS domain-containing protein compare
EX31_RS18370 -0.6 -1.2 tail protein X compare
EX31_RS11490 -0.5 -2.4 glycosyltransferase compare
EX31_RS25695 -0.5 -2.8 DUF1883 domain-containing protein compare
EX31_RS11460 -0.5 -1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS04320 -0.5 -1.5 hypothetical protein compare
EX31_RS14410 -0.5 -4.9 glycosyltransferase family 9 protein compare
EX31_RS24480 -0.5 -1.7 purine nucleoside phosphoramidase compare
EX31_RS15905 -0.5 -4.3 DNA polymerase I compare
EX31_RS09360 -0.5 -1.8 ABC transporter permease compare
EX31_RS01655 -0.5 -1.7 hypothetical protein compare
EX31_RS24730 -0.5 -1.7 YoaH family protein compare
EX31_RS22620 -0.5 -3.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS22785 -0.5 -0.7 YpfN family protein compare
EX31_RS20450 -0.5 -2.4 IMP dehydrogenase compare
EX31_RS24185 -0.5 -2.1 DNA-binding transcriptional repressor DeoR compare
EX31_RS15555 -0.5 -1.4 amino acid ABC transporter ATP-binding protein compare
EX31_RS02520 -0.5 -0.9 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS06595 -0.5 -1.1 electron transport complex subunit E compare
EX31_RS18010 -0.5 -1.8 methylglyoxal synthase compare
EX31_RS22080 -0.5 -3.4 peroxiredoxin C compare
EX31_RS06915 -0.5 -0.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS16860 -0.5 -4.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS06635 -0.5 -1.9 L-arabinose isomerase compare
EX31_RS25105 -0.5 -0.9 DUF2474 domain-containing protein compare
EX31_RS16645 -0.5 -1.0 DUF1471 domain-containing protein compare
EX31_RS20670 -0.5 -0.7 RNA chaperone/antiterminator CspA compare
EX31_RS02270 -0.5 -2.0 transcriptional regulator ChbR compare
EX31_RS07610 -0.5 -1.7 conjugal transfer protein TraR compare
EX31_RS08455 -0.5 -2.5 hypothetical protein compare
EX31_RS01390 -0.5 -0.6 hypothetical protein compare
EX31_RS10045 -0.5 -1.7 ABC transporter ATP-binding protein compare
EX31_RS10815 -0.5 -1.6 oxidoreductase compare
EX31_RS15350 -0.5 -1.9 nitrogen fixation protein NifX compare
EX31_RS11690 -0.4 -1.5 dihydroneopterin triphosphate diphosphatase compare
EX31_RS25630 -0.4 -2.0 DUF3606 domain-containing protein compare
EX31_RS17285 -0.4 -1.6 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS01510 -0.4 -1.4 DinI-like family protein compare
EX31_RS10375 -0.4 -1.0 hypothetical protein compare
EX31_RS22550 -0.4 -2.1 Kef family K(+) transporter compare
EX31_RS09190 -0.4 -1.4 ABC transporter permease compare
EX31_RS23895 -0.4 -2.0 TetR/AcrR family transcriptional regulator compare
EX31_RS18255 -0.4 -0.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS22680 -0.4 -2.6 polyphosphate kinase 1 compare
EX31_RS08545 -0.4 -1.9 transcription termination/antitermination protein NusA compare
EX31_RS23160 -0.4 -1.2 amino acid ABC transporter ATP-binding protein compare
EX31_RS15875 -0.4 -3.6 nitrogen regulation protein NR(II) compare
EX31_RS14770 -0.4 -1.3 hypothetical protein compare
EX31_RS23470 -0.4 -0.9 cyd operon protein YbgE compare
EX31_RS07465 -0.4 -1.5 LysR family transcriptional regulator compare
EX31_RS22320 -0.4 -3.0 ammonium transporter AmtB compare
EX31_RS07285 -0.4 -1.5 GNAT family N-acetyltransferase compare
EX31_RS23490 -0.4 -0.9 cell envelope integrity protein TolA compare
EX31_RS08825 -0.4 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS07080 -0.4 -1.8 NCS2 family permease compare
EX31_RS03330 -0.4 -1.3 hypoxanthine phosphoribosyltransferase compare
EX31_RS06940 -0.4 -1.9 HD domain-containing protein compare
EX31_RS05830 -0.4 -3.6 PTS mannitol transporter subunit IICBA compare
EX31_RS09495 -0.4 -1.6 DUF4186 domain-containing protein compare
EX31_RS14180 -0.4 -3.4 argininosuccinate lyase compare
EX31_RS24555 -0.4 -2.6 two-component system sensor histidine kinase PhoQ compare
EX31_RS18985 -0.4 -1.3 glutamine ABC transporter ATP-binding protein GlnQ compare
EX31_RS12535 -0.4 -2.7 DnaA initiator-associating protein DiaA compare
EX31_RS11525 -0.4 -1.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS19885 -0.4 -2.4 HypC/HybG/HupF family hydrogenase formation chaperone compare
EX31_RS17740 -0.4 -2.0 RluA family pseudouridine synthase compare
EX31_RS10585 -0.4 -1.4 septum site-determining protein MinD compare
EX31_RS11105 -0.4 -1.5 cytosine deaminase compare
EX31_RS06585 -0.4 -0.9 DUF2501 domain-containing protein compare
EX31_RS07215 -0.4 -1.8 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
EX31_RS25990 -0.4 -1.6 hypothetical protein compare
EX31_RS24395 -0.4 -1.4 ribonuclease E compare
EX31_RS09725 -0.4 -2.0 PQQ-dependent sugar dehydrogenase compare
EX31_RS00545 -0.4 -1.5 molybdopterin-dependent oxidoreductase compare
EX31_RS01280 -0.4 -0.7 SgcJ/EcaC family oxidoreductase compare
EX31_RS01955 -0.4 -0.8 DUF2931 family protein compare
EX31_RS24310 -0.4 -1.7 hypothetical protein compare
EX31_RS06610 -0.4 -2.0 electron transport complex subunit RsxC compare
EX31_RS19655 -0.4 -1.6 beta-ketoacyl-ACP synthase I compare
EX31_RS18335 -0.4 -1.8 hypothetical protein compare
EX31_RS25660 -0.4 -1.2 multidrug efflux pump-associated protein, AcrZ family compare
EX31_RS14335 -0.4 -0.9 serine O-acetyltransferase compare
EX31_RS15910 -0.4 -2.5 thiol:disulfide interchange protein DsbA compare
EX31_RS21295 -0.4 -1.3 acyl carrier protein compare
EX31_RS25970 -0.4 -1.5 glutathione transferase GstA compare
EX31_RS00190 -0.4 -1.2 H-NS histone family protein compare
EX31_RS17390 -0.4 -1.3 succinylglutamate desuccinylase compare
EX31_RS07445 -0.4 -1.6 amino acid ABC transporter permease compare
EX31_RS16285 -0.4 -1.4 conjugal transfer protein compare
EX31_RS10380 -0.4 -1.1 DUF4440 domain-containing protein compare
EX31_RS16620 -0.4 -1.2 glycosyltransferase compare
EX31_RS18315 -0.4 -2.3 phage tail protein I compare
EX31_RS16855 -0.4 -2.8 phosphoribosylamine--glycine ligase compare
EX31_RS09995 -0.4 -1.3 YkgJ family cysteine cluster protein compare
EX31_RS09630 -0.4 -1.6 spermidine/putrescine ABC transporter substrate-binding protein PotF compare
EX31_RS06650 -0.4 -2.0 L-arabinose ABC transporter ATP-binding protein AraG compare
EX31_RS08325 -0.4 -2.1 membrane protein compare
EX31_RS13445 -0.4 -3.0 argininosuccinate synthase compare
EX31_RS07540 -0.4 -1.8 helix-turn-helix transcriptional regulator compare
EX31_RS11385 -0.4 -1.6 hypothetical protein compare
EX31_RS09980 -0.4 -2.3 tryptophan synthase subunit alpha compare
EX31_RS07290 -0.4 -1.5 C4-dicarboxylic acid transporter DauA compare
EX31_RS03955 -0.4 -1.7 two-component system response regulator ArcA compare
EX31_RS11115 -0.3 -1.3 creatininase family protein compare
EX31_RS24600 -0.3 -0.8 hypothetical protein compare
EX31_RS02340 -0.3 -1.6 hypothetical protein compare
EX31_RS25785 -0.3 -1.6 hypothetical protein compare
EX31_RS16625 -0.3 -0.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS09165 -0.3 -0.9 FadR family transcriptional regulator compare
EX31_RS06695 -0.3 -2.1 cellulose synthase operon protein YhjQ compare
EX31_RS19600 -0.3 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS23745 -0.3 -1.8 molybdenum cofactor biosynthesis protein B compare
EX31_RS12945 -0.3 -2.1 VOC family protein compare
EX31_RS24305 -0.3 -1.9 VOC family protein compare
EX31_RS23175 -0.3 -1.7 amino acid ABC transporter substrate-binding protein compare
EX31_RS14345 -0.3 -1.0 protein-export chaperone SecB compare
EX31_RS10510 -0.3 -2.4 sodium/proton antiporter NhaB compare
EX31_RS06720 -0.3 -1.9 imidazolonepropionase compare
EX31_RS23860 -0.3 -0.8 hypothetical protein compare
EX31_RS09945 -0.3 -1.9 threonylcarbamoyl-AMP synthase compare
EX31_RS01285 -0.3 -1.8 sulfite exporter TauE/SafE family protein compare
EX31_RS06730 -0.3 -1.8 formimidoylglutamate deiminase compare
EX31_RS15685 -0.3 -1.4 phage shock protein PspA compare
EX31_RS25975 -0.3 -2.7 3',5'-cyclic-AMP phosphodiesterase compare
EX31_RS01270 -0.3 -1.8 LysR family transcriptional regulator compare
EX31_RS17560 -0.3 -1.8 FadR family transcriptional regulator compare
EX31_RS22505 -0.3 -1.5 adenine phosphoribosyltransferase compare
EX31_RS02625 -0.3 -0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm_agar experiments