Experiment set4S177 for Rahnella sp. WP5

Compare to:

NL-CCM_agar

200 most important genes:

  gene name fitness t score description  
EX31_RS21020 -2.8 -3.3 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS22430 -2.4 -2.2 hemolysin expression modulator Hha compare
EX31_RS07785 -2.0 -2.2 carbon storage regulator CsrA compare
EX31_RS25725 -1.8 -2.5 hypothetical protein compare
EX31_RS15870 -1.8 -2.6 glutamate--ammonia ligase compare
EX31_RS14340 -1.6 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS19795 -1.4 -2.3 hypothetical protein compare
EX31_RS17285 -1.3 -3.5 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS09580 -1.3 -2.0 flagellar motor switch protein FliN compare
EX31_RS17290 -1.3 -4.0 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS06800 -1.0 -2.9 ABC transporter permease compare
EX31_RS18255 -1.0 -2.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS07415 -0.9 -1.2 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS13045 -0.9 -6.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS25365 -0.9 -1.0 50S ribosomal protein L31 compare
EX31_RS23245 -0.9 -7.9 asparagine synthase B compare
EX31_RS21470 -0.9 -5.4 phosphoglycerate dehydrogenase compare
EX31_RS11840 -0.9 -6.5 diacylglycerol kinase compare
EX31_RS22750 -0.9 -2.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS14320 -0.9 -1.2 envelope stress response regulator transcription factor CpxR compare
EX31_RS06485 -0.9 -1.7 YdbL family protein compare
EX31_RS16645 -0.8 -2.0 DUF1471 domain-containing protein compare
EX31_RS02360 -0.8 -1.6 CsbD family protein compare
EX31_RS09650 -0.8 -2.0 GrxA family glutaredoxin compare
EX31_RS02625 -0.8 -1.2 hypothetical protein compare
EX31_RS09080 -0.8 -1.3 LysR family transcriptional regulator compare
EX31_RS10515 -0.8 -3.3 disulfide bond formation protein DsbB compare
EX31_RS21280 -0.8 -1.7 hydroxymyristoyl-ACP dehydratase compare
EX31_RS23175 -0.8 -3.4 amino acid ABC transporter substrate-binding protein compare
EX31_RS15880 -0.8 -3.9 nitrogen regulation protein NR(I) compare
EX31_RS14405 -0.7 -0.9 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS19845 -0.7 -1.1 DNA polymerase II small subunit compare
EX31_RS23895 -0.7 -2.6 TetR/AcrR family transcriptional regulator compare
EX31_RS25295 -0.7 -1.4 GhoT/OrtT family toxin compare
EX31_RS23470 -0.7 -1.8 cyd operon protein YbgE compare
EX31_RS23440 -0.7 -1.4 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS06915 -0.7 -1.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS24140 -0.7 -1.2 DUF2594 family protein compare
EX31_RS01885 -0.7 -1.5 type IV secretion protein Rhs compare
EX31_RS18445 -0.7 -1.9 DUF2732 domain-containing protein compare
EX31_RS17100 -0.7 -1.8 colicin immunity protein Cui compare
EX31_RS13745 -0.7 -2.7 pyridoxal kinase PdxY compare
EX31_RS04035 -0.7 -5.3 phosphoserine phosphatase compare
EX31_RS20655 -0.6 -1.7 hypothetical protein compare
EX31_RS24255 -0.6 -5.2 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS12930 -0.6 -2.1 Rho-binding antiterminator compare
EX31_RS14345 -0.6 -1.3 protein-export chaperone SecB compare
EX31_RS10025 -0.6 -1.7 hypothetical protein compare
EX31_RS18945 -0.6 -2.0 CatB-related O-acetyltransferase compare
EX31_RS24780 -0.6 -2.2 YebY family protein compare
EX31_RS16680 -0.6 -1.0 enoyl-CoA hydratase compare
EX31_RS24540 -0.6 -2.8 NAD-dependent protein deacylase compare
EX31_RS20105 -0.6 -2.0 tRNA-Val compare
EX31_RS18370 -0.6 -0.8 tail protein X compare
EX31_RS24115 -0.5 -0.7 tRNA-Lys compare
EX31_RS21575 -0.5 -1.2 hypothetical protein compare
EX31_RS07535 -0.5 -1.7 cytochrome b/b6 domain-containing protein compare
EX31_RS25025 -0.5 -1.2 DUF1272 domain-containing protein compare
EX31_RS10955 -0.5 -1.1 AI-2E family transporter compare
EX31_RS03325 -0.5 -1.2 DUF2778 domain-containing protein compare
EX31_RS15875 -0.5 -4.2 nitrogen regulation protein NR(II) compare
EX31_RS12385 -0.5 -4.2 RNase adapter RapZ compare
EX31_RS23785 -0.5 -1.5 DUF262 domain-containing protein compare
EX31_RS02470 -0.5 -2.5 alpha/beta fold hydrolase compare
EX31_RS01260 -0.5 -1.2 YebG family protein compare
EX31_RS16955 -0.5 -1.1 ABC transporter ATP-binding protein compare
EX31_RS19435 -0.5 -1.0 NADH-quinone oxidoreductase subunit A compare
EX31_RS06645 -0.5 -2.0 arabinose ABC transporter substrate-binding protein compare
EX31_RS04925 -0.5 -1.1 Fe-S biogenesis protein NfuA compare
EX31_RS24260 -0.5 -1.3 YceK/YidQ family lipoprotein compare
EX31_RS15810 -0.5 -2.3 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
EX31_RS24450 -0.5 -1.1 aminodeoxychorismate lyase compare
EX31_RS17250 -0.5 -2.1 DUF1493 family protein compare
EX31_RS03775 -0.5 -1.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS02155 -0.5 -2.7 HD domain-containing protein compare
EX31_RS15595 -0.5 -1.8 MetQ/NlpA family lipoprotein compare
EX31_RS02530 -0.5 -0.9 ABC transporter ATP-binding protein compare
EX31_RS03860 -0.5 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
EX31_RS13430 -0.5 -2.3 hypothetical protein compare
EX31_RS02230 -0.5 -2.5 SDR family oxidoreductase compare
EX31_RS10930 -0.5 -0.7 protein DsrB compare
EX31_RS08825 -0.5 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS16860 -0.5 -4.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS07590 -0.5 -1.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS24945 -0.5 -1.5 5S ribosomal RNA compare
EX31_RS16675 -0.5 -1.7 histidine utilization repressor compare
EX31_RS18115 -0.5 -1.7 aliphatic sulfonate ABC transporter permease SsuC compare
EX31_RS24345 -0.5 -1.8 cytochrome b compare
EX31_RS19895 -0.5 -2.1 hydrogenase maturation nickel metallochaperone HypA compare
EX31_RS16655 -0.4 -1.2 hypothetical protein compare
EX31_RS11650 -0.4 -1.9 glucose 1-dehydrogenase compare
EX31_RS20870 -0.4 -2.0 colicin compare
EX31_RS06690 -0.4 -1.4 hypothetical protein compare
EX31_RS03900 -0.4 -1.4 molecular chaperone DnaK compare
EX31_RS14500 -0.4 -2.6 orotate phosphoribosyltransferase compare
EX31_RS06795 -0.4 -1.7 ABC transporter ATP-binding protein compare
EX31_RS01090 -0.4 -1.8 metal ABC transporter permease compare
EX31_RS19010 -0.4 -1.6 alkylphosphonate utilization protein compare
EX31_RS15905 -0.4 -3.4 DNA polymerase I compare
EX31_RS06455 -0.4 -1.6 sugar ABC transporter permease compare
EX31_RS11675 -0.4 -1.0 Holliday junction branch migration protein RuvA compare
EX31_RS23165 -0.4 -2.7 glutamate/aspartate ABC transporter permease GltK compare
EX31_RS01075 -0.4 -2.4 manganese-binding transcriptional regulator MntR compare
EX31_RS18435 -0.4 -2.3 DUF5405 family protein compare
EX31_RS25645 -0.4 -0.8 K(+)-transporting ATPase subunit F compare
EX31_RS22550 -0.4 -1.9 Kef family K(+) transporter compare
EX31_RS00355 -0.4 -1.4 mandelate racemase compare
EX31_RS25875 -0.4 -1.8 hypothetical protein compare
EX31_RS10340 -0.4 -1.3 GNAT family N-acetyltransferase compare
EX31_RS16710 -0.4 -1.5 ABC transporter permease subunit compare
EX31_RS06225 -0.4 -0.9 hypothetical protein compare
EX31_RS24790 -0.4 -2.2 cation transporter compare
EX31_RS16855 -0.4 -3.2 phosphoribosylamine--glycine ligase compare
EX31_RS08545 -0.4 -2.2 transcription termination/antitermination protein NusA compare
EX31_RS00985 -0.4 -1.6 type VI secretion protein compare
EX31_RS22315 -0.4 -1.9 P-II family nitrogen regulator compare
EX31_RS00540 -0.4 -1.4 pentapeptide MXKDX repeat protein compare
EX31_RS05430 -0.4 -2.0 4-oxalocrotonate tautomerase family protein compare
EX31_RS25095 -0.4 -0.7 hypothetical protein compare
EX31_RS18470 -0.4 -2.0 pyruvate formate lyase 1-activating protein compare
EX31_RS02595 -0.4 -2.8 dihydrodipicolinate synthase family protein compare
EX31_RS26005 -0.4 -1.5 transposase compare
EX31_RS03330 -0.4 -1.1 hypoxanthine phosphoribosyltransferase compare
EX31_RS08120 -0.4 -2.3 hypothetical protein compare
EX31_RS03790 -0.4 -1.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS19370 -0.4 -1.7 DUF1097 domain-containing protein compare
EX31_RS21990 -0.4 -2.1 recombination-associated protein RdgC compare
EX31_RS10855 -0.4 -1.9 hypothetical protein compare
EX31_RS02450 -0.4 -2.3 AMP-binding protein compare
EX31_RS07440 -0.4 -0.9 urea carboxylase-associated family protein compare
EX31_RS01670 -0.4 -1.3 lysozyme compare
EX31_RS02520 -0.4 -0.7 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS20450 -0.4 -1.9 IMP dehydrogenase compare
EX31_RS22080 -0.4 -2.5 peroxiredoxin C compare
EX31_RS23560 -0.4 -1.3 phosphate starvation-inducible protein compare
EX31_RS00255 -0.4 -1.9 hypothetical protein compare
EX31_RS01970 -0.4 -0.5 hypothetical protein compare
EX31_RS00110 -0.4 -1.7 ABC transporter permease compare
EX31_RS03085 -0.4 -2.0 hypothetical protein compare
EX31_RS01985 -0.4 -1.4 type VI secretion system lipoprotein TssJ compare
EX31_RS00545 -0.4 -0.9 molybdopterin-dependent oxidoreductase compare
EX31_RS20140 -0.4 -1.2 hypothetical protein compare
EX31_RS02125 -0.4 -2.1 helix-turn-helix transcriptional regulator compare
EX31_RS11255 -0.4 -2.4 CidA/LrgA family protein compare
EX31_RS20975 -0.4 -2.1 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS23170 -0.4 -2.4 amino acid ABC transporter permease compare
EX31_RS03645 -0.4 -0.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS21895 -0.4 -3.1 phosphoribosylformylglycinamidine synthase compare
EX31_RS22620 -0.4 -1.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS24250 -0.4 -2.3 glucan biosynthesis protein G compare
EX31_RS10035 -0.4 -0.6 cardiolipin synthase compare
EX31_RS06565 -0.4 -1.2 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
EX31_RS23705 -0.4 -1.6 malonyl-ACP O-methyltransferase BioC compare
EX31_RS01280 -0.4 -0.9 SgcJ/EcaC family oxidoreductase compare
EX31_RS04845 -0.4 -1.8 ferrous iron transporter A compare
EX31_RS25380 -0.4 -2.3 hypothetical protein compare
EX31_RS15685 -0.4 -1.3 phage shock protein PspA compare
EX31_RS25450 -0.4 -1.1 helix-turn-helix domain-containing protein compare
EX31_RS08270 -0.4 -1.2 DUF2000 domain-containing protein compare
EX31_RS11130 -0.4 -1.5 ABC transporter permease compare
EX31_RS09615 -0.4 -2.0 putrescine ABC transporter permease PotI compare
EX31_RS02165 -0.4 -1.8 hypothetical protein compare
EX31_RS07000 -0.4 -1.4 iron ABC transporter permease compare
EX31_RS00700 -0.4 -1.1 ABC transporter permease compare
EX31_RS09560 -0.4 -1.4 flagella biosynthesis chaperone FliJ compare
EX31_RS10975 -0.3 -1.4 DUF2891 domain-containing protein compare
EX31_RS09775 -0.3 -0.8 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS23530 -0.3 -1.7 nicotinamide riboside transporter PnuC compare
EX31_RS09170 -0.3 -0.9 ABC transporter ATP-binding protein compare
EX31_RS22250 -0.3 -1.0 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS09930 -0.3 -2.1 adenosylcobinamide-GDP ribazoletransferase compare
EX31_RS14180 -0.3 -2.8 argininosuccinate lyase compare
EX31_RS25105 -0.3 -0.7 DUF2474 domain-containing protein compare
EX31_RS05870 -0.3 -1.4 plasmid stabilization protein compare
EX31_RS13445 -0.3 -2.9 argininosuccinate synthase compare
EX31_RS23305 -0.3 -1.5 LexA regulated protein compare
EX31_RS23285 -0.3 -1.7 hypothetical protein compare
EX31_RS09225 -0.3 -1.2 iron-containing alcohol dehydrogenase family protein compare
EX31_RS07200 -0.3 -2.1 FNR family transcription factor compare
EX31_RS26040 -0.3 -0.6 hypothetical protein compare
EX31_RS14770 -0.3 -1.4 hypothetical protein compare
EX31_RS06695 -0.3 -1.9 cellulose synthase operon protein YhjQ compare
EX31_RS12585 -0.3 -2.4 hypothetical protein compare
EX31_RS02150 -0.3 -1.8 YceI family protein compare
EX31_RS09715 -0.3 -1.7 M20 family metallopeptidase compare
EX31_RS23815 -0.3 -1.4 hypothetical protein compare
EX31_RS24340 -0.3 -1.6 YceI family protein compare
EX31_RS20940 -0.3 -1.0 AlpA family transcriptional regulator compare
EX31_RS01530 -0.3 -0.7 hypothetical protein compare
EX31_RS03570 -0.3 -0.5 DUF721 domain-containing protein compare
EX31_RS16400 -0.3 -1.6 L-tyrosine/L-tryptophan isonitrile synthase family protein compare
EX31_RS13765 -0.3 -2.0 anhydro-N-acetylmuramic acid kinase compare
EX31_RS05040 -0.3 -1.4 helix-turn-helix domain-containing protein compare
EX31_RS21960 -0.3 -1.7 shikimate kinase AroL compare
EX31_RS20180 -0.3 -0.6 phosphocarrier protein Hpr compare
EX31_RS23760 -0.3 -1.5 molybdopterin synthase catalytic subunit MoaE compare
EX31_RS22460 -0.3 -1.1 50S ribosomal protein L36 compare
EX31_RS24050 -0.3 -1.8 ABC transporter permease compare
EX31_RS00430 -0.3 -2.0 PTS sucrose transporter subunit IIBC compare
EX31_RS09565 -0.3 -0.7 flagellar hook-length control protein FliK compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm_agar experiments