Experiment set4S176 for Rahnella sp. WP5

200 most important genes:

gene	name	fitness	t score	description
EX31_RS22430		-3.3	-2.3	hemolysin expression modulator Hha
EX31_RS05825		-2.2	-2.1	mannitol-1-phosphate 5-dehydrogenase
EX31_RS13335		-2.0	-2.8	transcriptional regulator
EX31_RS13815		-1.7	-1.9	ribonuclease T
EX31_RS10100		-1.6	-2.7	two-component system response regulator RssB
EX31_RS06595		-1.5	-2.2	electron transport complex subunit E
EX31_RS20735		-1.2	-3.3	exodeoxyribonuclease V subunit beta
EX31_RS02520		-1.2	-1.6	sigma-54-dependent Fis family transcriptional regulator
EX31_RS25290		-1.2	-3.0	hypothetical protein
EX31_RS07785		-1.1	-1.3	carbon storage regulator CsrA
EX31_RS15870		-1.1	-2.2	glutamate--ammonia ligase
EX31_RS21020		-1.1	-2.1	D-sedoheptulose 7-phosphate isomerase
EX31_RS06340		-1.0	-2.3	thiol peroxidase
EX31_RS10535		-1.0	-1.0	GtrA family protein
EX31_RS13045		-1.0	-6.3	bifunctional uridylyltransferase/uridylyl-removing protein GlnD
EX31_RS22625		-0.9	-2.2	5-(carboxyamino)imidazole ribonucleotide mutase
EX31_RS26000		-0.9	-1.6	GntR family transcriptional regulator
EX31_RS16725		-0.9	-1.7	phytanoyl-CoA dioxygenase
EX31_RS15655		-0.9	-1.8	hypothetical protein
EX31_RS25295		-0.9	-2.2	GhoT/OrtT family toxin
EX31_RS23245		-0.9	-7.6	asparagine synthase B
EX31_RS06485		-0.9	-1.8	YdbL family protein
EX31_RS02235		-0.8	-2.1	helix-turn-helix transcriptional regulator
EX31_RS14030		-0.8	-3.4	glutathione peroxidase
EX31_RS07340		-0.8	-1.5	stress-induced protein YchH
EX31_RS11625		-0.8	-1.1	hypothetical protein
EX31_RS15880		-0.8	-4.5	nitrogen regulation protein NR(I)
EX31_RS06055		-0.8	-1.7	phosphate ABC transporter ATP-binding protein PstB
EX31_RS24450		-0.8	-1.7	aminodeoxychorismate lyase
EX31_RS17835		-0.8	-2.4	PTS transporter subunit EIIB
EX31_RS18255		-0.8	-2.4	3-phosphoserine/phosphohydroxythreonine transaminase
EX31_RS13870		-0.8	-1.7	pyruvate kinase PykF
EX31_RS02515		-0.8	-1.6	PAS domain-containing protein
EX31_RS21470		-0.8	-4.8	phosphoglycerate dehydrogenase
EX31_RS11840		-0.8	-5.7	diacylglycerol kinase
EX31_RS18370		-0.8	-2.0	tail protein X
EX31_RS23440		-0.8	-1.5	2-oxoglutarate dehydrogenase E1 component
EX31_RS08270		-0.8	-2.8	DUF2000 domain-containing protein
EX31_RS17290		-0.7	-2.4	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB
EX31_RS04035		-0.7	-5.4	phosphoserine phosphatase
EX31_RS24260		-0.7	-1.9	YceK/YidQ family lipoprotein
EX31_RS14310		-0.7	-2.4	6-phosphofructokinase
EX31_RS11045		-0.7	-1.7	NADP-dependent oxidoreductase
EX31_RS02530		-0.7	-1.4	ABC transporter ATP-binding protein
EX31_RS10025		-0.7	-1.9	hypothetical protein
EX31_RS09775		-0.7	-0.8	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase
EX31_RS06690		-0.7	-1.6	hypothetical protein
EX31_RS10515		-0.7	-1.9	disulfide bond formation protein DsbB
EX31_RS09490		-0.7	-1.1	hypothetical protein
EX31_RS00610		-0.7	-3.0	heme utilization cystosolic carrier protein HutX
EX31_RS14550		-0.7	-1.2	Trk system potassium transporter TrkH
EX31_RS21280		-0.6	-1.5	hydroxymyristoyl-ACP dehydratase
EX31_RS02325		-0.6	-1.1	GNAT family N-acetyltransferase
EX31_RS18045		-0.6	-1.4	macrodomain Ter protein MatP
EX31_RS16955		-0.6	-2.3	ABC transporter ATP-binding protein
EX31_RS17955		-0.6	-2.4	SDR family oxidoreductase
EX31_RS26010		-0.6	-1.9	YnhF family membrane protein
EX31_RS25140		-0.6	-1.6	AlpA family transcriptional regulator
EX31_RS07440		-0.6	-1.3	urea carboxylase-associated family protein
EX31_RS09995		-0.6	-1.7	YkgJ family cysteine cluster protein
EX31_RS09535		-0.6	-1.0	flagellar hook-basal body complex protein FliE
EX31_RS02470		-0.6	-2.5	alpha/beta fold hydrolase
EX31_RS06800		-0.6	-1.8	ABC transporter permease
EX31_RS06680		-0.6	-0.8	cellulose biosynthesis protein BcsF
EX31_RS06550		-0.6	-2.0	two-component system response regulator NarL
EX31_RS07430		-0.6	-1.8	transporter substrate-binding domain-containing protein
EX31_RS09985		-0.6	-2.1	BON domain-containing protein
EX31_RS24765		-0.6	-2.0	non-heme ferritin
EX31_RS00130		-0.6	-2.1	GGDEF domain-containing protein
EX31_RS01805		-0.6	-0.9	hypothetical protein
EX31_RS24255		-0.6	-4.4	glucans biosynthesis glucosyltransferase MdoH
EX31_RS02365		-0.6	-1.0	hypothetical protein
EX31_RS06980		-0.5	-1.5	iron ABC transporter ATP-binding protein FetA
EX31_RS05040		-0.5	-2.4	helix-turn-helix domain-containing protein
EX31_RS08545		-0.5	-2.2	transcription termination/antitermination protein NusA
EX31_RS14405		-0.5	-0.8	lipopolysaccharide heptosyltransferase RfaC
EX31_RS11240		-0.5	-1.2	GNAT family N-acetyltransferase
EX31_RS18470		-0.5	-2.7	pyruvate formate lyase 1-activating protein
EX31_RS07525		-0.5	-1.8	sulfurtransferase
EX31_RS25215		-0.5	-2.0	polysulfide reductase NrfD
EX31_RS00630		-0.5	-1.1	iron dicitrate ABC transporter ATP-binding protein
EX31_RS07470		-0.5	-1.3	hypothetical protein
EX31_RS06605		-0.5	-3.6	electron transport complex subunit RsxD
EX31_RS20670		-0.5	-0.7	RNA chaperone/antiterminator CspA
EX31_RS09170		-0.5	-1.4	ABC transporter ATP-binding protein
EX31_RS24825		-0.5	-3.9	WG repeat-containing protein
EX31_RS08120		-0.5	-2.8	hypothetical protein
EX31_RS07130		-0.5	-1.6	ABC transporter substrate-binding protein
EX31_RS25555		-0.5	-1.3	GpE family phage tail protein
EX31_RS14340		-0.5	-0.7	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
EX31_RS14635		-0.5	-2.7	DedA family protein
EX31_RS08730		-0.5	-2.8	iron-sulfur cluster repair protein YtfE
EX31_RS15875		-0.5	-3.8	nitrogen regulation protein NR(II)
EX31_RS09335		-0.5	-1.5	hypothetical protein
EX31_RS25300		-0.5	-1.1	YqaE/Pmp3 family membrane protein
EX31_RS10930		-0.5	-1.5	protein DsrB
EX31_RS12400		-0.5	-0.9	RNA polymerase factor sigma-54
EX31_RS15095		-0.5	-1.9	O-antigen assembly polymerase
EX31_RS06620		-0.5	-1.8	electron transport complex subunit RsxA
EX31_RS12385		-0.5	-3.8	RNase adapter RapZ
EX31_RS19845		-0.5	-1.1	DNA polymerase II small subunit
EX31_RS08140		-0.5	-1.4	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
EX31_RS18290		-0.5	-1.3	phage tail assembly protein
EX31_RS23470		-0.5	-0.9	cyd operon protein YbgE
EX31_RS23170		-0.5	-2.4	amino acid ABC transporter permease
EX31_RS23895		-0.5	-1.9	TetR/AcrR family transcriptional regulator
EX31_RS02480		-0.5	-2.2	acyl-CoA/acyl-ACP dehydrogenase
EX31_RS12875		-0.5	-1.0	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
EX31_RS24395		-0.5	-1.8	ribonuclease E
EX31_RS23415		-0.5	-3.3	citrate synthase
EX31_RS09920		-0.5	-1.8	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
EX31_RS18480		-0.5	-2.1	ferredoxin-type protein NapF
EX31_RS24945		-0.5	-0.7	5S ribosomal RNA
EX31_RS20105		-0.5	-2.5	tRNA-Val
EX31_RS17810		-0.4	-1.7	triphosphoribosyl-dephospho-CoA synthase CitG
EX31_RS13980		-0.4	-1.2	lipoate--protein ligase A
EX31_RS15905		-0.4	-3.6	DNA polymerase I
EX31_RS06565		-0.4	-1.1	Ni(II)/Co(II)-binding transcriptional repressor RcnR
EX31_RS00905		-0.4	-1.5	ester cyclase
EX31_RS21145		-0.4	-1.5	oxalurate catabolism protein HpxZ
EX31_RS20265		-0.4	-1.2	YaiI/YqxD family protein
EX31_RS14180		-0.4	-3.7	argininosuccinate lyase
EX31_RS14185		-0.4	-3.0	acetylglutamate kinase
EX31_RS07590		-0.4	-1.3	bifunctional chorismate mutase/prephenate dehydrogenase
EX31_RS10200		-0.4	-2.3	4-oxalmesaconate hydratase
EX31_RS23790		-0.4	-2.1	transcriptional regulator
EX31_RS22620		-0.4	-2.1	5-(carboxyamino)imidazole ribonucleotide synthase
EX31_RS25680		-0.4	-2.5	PhoP/PhoQ regulator MgrB
EX31_RS22250		-0.4	-1.2	ATP-dependent protease ATP-binding subunit ClpX
EX31_RS17025		-0.4	-1.5	FadR family transcriptional regulator
EX31_RS23175		-0.4	-2.2	amino acid ABC transporter substrate-binding protein
EX31_RS12585		-0.4	-2.2	hypothetical protein
EX31_RS02545		-0.4	-1.9	alpha/beta hydrolase
EX31_RS09580		-0.4	-0.7	flagellar motor switch protein FliN
EX31_RS01135		-0.4	-1.3	SDR family oxidoreductase
EX31_RS08805		-0.4	-3.1	protease modulator HflC
EX31_RS09315		-0.4	-2.3	nitrate reductase subunit beta
EX31_RS14115		-0.4	-1.7	metal-dependent hydrolase
EX31_RS17265		-0.4	-1.5	hypothetical protein
EX31_RS03330		-0.4	-1.4	hypoxanthine phosphoribosyltransferase
EX31_RS09980		-0.4	-2.7	tryptophan synthase subunit alpha
EX31_RS09760		-0.4	-1.1	D-xylose ABC transporter substrate-binding protein
EX31_RS21895		-0.4	-3.4	phosphoribosylformylglycinamidine synthase
EX31_RS21440		-0.4	-1.6	arginine exporter ArgO
EX31_RS04845		-0.4	-1.3	ferrous iron transporter A
EX31_RS16675		-0.4	-1.5	histidine utilization repressor
EX31_RS10020		-0.4	-1.1	YciI family protein
EX31_RS01200		-0.4	-2.1	hypothetical protein
EX31_RS09270		-0.4	-1.3	DUF1611 domain-containing protein
EX31_RS00380		-0.4	-1.3	ABC transporter ATP-binding protein
EX31_RS02585		-0.4	-2.7	nucleoside hydrolase
EX31_RS09950		-0.4	-2.1	PHP domain-containing protein
EX31_RS01075		-0.4	-1.7	manganese-binding transcriptional regulator MntR
EX31_RS24380		-0.4	-1.1	DNA damage-inducible protein I
EX31_RS10830		-0.4	-1.1	copper-binding protein
EX31_RS05430		-0.4	-1.3	4-oxalocrotonate tautomerase family protein
EX31_RS06895		-0.4	-1.5	HlyD family secretion protein
EX31_RS20395		-0.4	-2.2	hydroxyethylthiazole kinase
EX31_RS19205		-0.4	-1.4	50S ribosomal protein L25
EX31_RS18215		-0.4	-2.0	cold-shock protein
EX31_RS23725		-0.4	-0.9	DUF2132 domain-containing protein
EX31_RS21575		-0.4	-1.5	hypothetical protein
EX31_RS15865		-0.4	-3.2	ribosome-dependent GTPase TypA
EX31_RS24730		-0.4	-1.0	YoaH family protein
EX31_RS05830		-0.4	-3.1	PTS mannitol transporter subunit IICBA
EX31_RS03010		-0.4	-2.2	helix-turn-helix domain-containing protein
EX31_RS10795		-0.4	-1.9	HlyD family secretion protein
EX31_RS13445		-0.4	-3.1	argininosuccinate synthase
EX31_RS02790		-0.4	-1.4	low molecular weight phosphotyrosine protein phosphatase
EX31_RS06710		-0.4	-2.5	cellulose biosynthesis protein BcsC
EX31_RS10820		-0.4	-2.0	magnesium/cobalt transporter CorA
EX31_RS23425		-0.3	-2.1	succinate dehydrogenase membrane anchor subunit
EX31_RS04615		-0.3	-2.1	OsmC family protein
EX31_RS17295		-0.3	-0.9	hypothetical protein
EX31_RS15460		-0.3	-1.4	hypothetical protein
EX31_RS06325		-0.3	-1.2	pyrimidine (deoxy)nucleoside triphosphate diphosphatase
EX31_RS24600		-0.3	-0.9	hypothetical protein
EX31_RS02035		-0.3	-1.7	ABC transporter ATP-binding protein
EX31_RS11855		-0.3	-1.8	CsbD family protein
EX31_RS02195		-0.3	-1.2	MarR family transcriptional regulator
EX31_RS22145		-0.3	-0.6	phosphatidylglycerophosphatase A
EX31_RS13745		-0.3	-1.2	pyridoxal kinase PdxY
EX31_RS10960		-0.3	-1.6	epoxyqueuosine reductase QueH
EX31_RS12530		-0.3	-2.4	divisome-associated lipoprotein YraP
EX31_RS00350		-0.3	-2.0	exodeoxyribonuclease X
EX31_RS19725		-0.3	-2.7	phospholipid-binding lipoprotein MlaA
EX31_RS19215		-0.3	-1.8	YejL family protein
EX31_RS02385		-0.3	-0.6	hypothetical protein
EX31_RS25035		-0.3	-1.9	hypothetical protein
EX31_RS00545		-0.3	-1.1	molybdopterin-dependent oxidoreductase
EX31_RS16965		-0.3	-1.9	iron ABC transporter permease
EX31_RS19150		-0.3	-1.9	hypothetical protein
EX31_RS15555		-0.3	-1.3	amino acid ABC transporter ATP-binding protein
EX31_RS26040		-0.3	-0.7	hypothetical protein
EX31_RS09885		-0.3	-2.2	aconitate hydratase AcnA
EX31_RS03220		-0.3	-0.5	Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC
EX31_RS20655		-0.3	-0.6	hypothetical protein
EX31_RS19420		-0.3	-0.7	NADH-quinone oxidoreductase subunit NuoE
EX31_RS20950		-0.3	-1.5	tRNA-Thr
EX31_RS25895		-0.3	-1.0	DinI-like family protein

Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm_agar experiments