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Experiment set4S175 for
Rahnella sp. WP5
Compare to:
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NL-CCM_agar
200 most important genes:
gene
name
fitness
t score
description
EX31
_RS14340
-2.4
-2.3
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
compare
EX31
_RS10035
-1.7
-1.9
cardiolipin synthase
compare
EX31
_RS09580
-1.6
-2.4
flagellar motor switch protein FliN
compare
EX31
_RS13815
-1.6
-1.9
ribonuclease T
compare
EX31
_RS03220
-1.5
-1.8
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC
compare
EX31
_RS12875
-1.3
-2.5
D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
compare
EX31
_RS21020
-1.3
-1.7
D-sedoheptulose 7-phosphate isomerase
compare
EX31
_RS14405
-1.2
-1.7
lipopolysaccharide heptosyltransferase RfaC
compare
EX31
_RS18255
-1.2
-3.0
3-phosphoserine/phosphohydroxythreonine transaminase
compare
EX31
_RS01885
-1.2
-2.8
type IV secretion protein Rhs
compare
EX31
_RS01390
-1.1
-1.4
hypothetical protein
compare
EX31
_RS05825
-1.1
-1.5
mannitol-1-phosphate 5-dehydrogenase
compare
EX31
_RS08140
-1.1
-2.2
bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
compare
EX31
_RS11840
-1.1
-8.0
diacylglycerol kinase
compare
EX31
_RS22145
-1.1
-2.2
phosphatidylglycerophosphatase A
compare
EX31
_RS02520
-1.1
-1.7
sigma-54-dependent Fis family transcriptional regulator
compare
EX31
_RS06055
-1.1
-2.5
phosphate ABC transporter ATP-binding protein PstB
compare
EX31
_RS02560
-1.0
-1.3
hypothetical protein
compare
EX31
_RS16625
-1.0
-1.4
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
compare
EX31
_RS21470
-1.0
-5.5
phosphoglycerate dehydrogenase
compare
EX31
_RS08745
-1.0
-1.1
50S ribosomal protein L9
compare
EX31
_RS17835
-1.0
-1.9
PTS transporter subunit EIIB
compare
EX31
_RS13045
-1.0
-6.7
bifunctional uridylyltransferase/uridylyl-removing protein GlnD
compare
EX31
_RS01510
-0.9
-3.3
DinI-like family protein
compare
EX31
_RS15880
-0.9
-5.4
nitrogen regulation protein NR(I)
compare
EX31
_RS20655
-0.9
-2.0
hypothetical protein
compare
EX31
_RS17290
-0.9
-2.7
tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB
compare
EX31
_RS22430
-0.9
-1.2
hemolysin expression modulator Hha
compare
EX31
_RS07520
-0.9
-1.9
ornithine cyclodeaminase
compare
EX31
_RS22250
-0.9
-2.1
ATP-dependent protease ATP-binding subunit ClpX
compare
EX31
_RS03710
-0.8
-1.4
glucose uptake inhibitor SgrT
compare
EX31
_RS23245
-0.8
-7.4
asparagine synthase B
compare
EX31
_RS18450
-0.8
-1.2
hypothetical protein
compare
EX31
_RS22800
-0.8
-2.0
ArsC family reductase
compare
EX31
_RS06595
-0.8
-2.0
electron transport complex subunit E
compare
EX31
_RS10515
-0.8
-3.1
disulfide bond formation protein DsbB
compare
EX31
_RS09905
-0.8
-3.4
protease SohB
compare
EX31
_RS09170
-0.8
-1.9
ABC transporter ATP-binding protein
compare
EX31
_RS23895
-0.7
-3.3
TetR/AcrR family transcriptional regulator
compare
EX31
_RS23320
-0.7
-2.5
alpha-D-glucose phosphate-specific phosphoglucomutase
compare
EX31
_RS09490
-0.7
-0.9
hypothetical protein
compare
EX31
_RS00450
-0.7
-2.4
methionine-R-sulfoxide reductase
compare
EX31
_RS04035
-0.7
-5.6
phosphoserine phosphatase
compare
EX31
_RS02920
-0.7
-1.7
glycosyltransferase
compare
EX31
_RS02270
-0.7
-2.5
transcriptional regulator ChbR
compare
EX31
_RS14550
-0.7
-1.6
Trk system potassium transporter TrkH
compare
EX31
_RS15905
-0.7
-5.7
DNA polymerase I
compare
EX31
_RS02130
-0.7
-2.5
amino acid-binding protein
compare
EX31
_RS23880
-0.7
-1.8
DUF1471 domain-containing protein
compare
EX31
_RS18525
-0.7
-1.8
DNA translocase FtsK
compare
EX31
_RS06780
-0.7
-2.6
glucose 1-dehydrogenase
compare
EX31
_RS02385
-0.7
-1.1
hypothetical protein
compare
EX31
_RS16645
-0.6
-1.3
DUF1471 domain-containing protein
compare
EX31
_RS26000
-0.6
-1.3
GntR family transcriptional regulator
compare
EX31
_RS06620
-0.6
-2.7
electron transport complex subunit RsxA
compare
EX31
_RS24255
-0.6
-5.3
glucans biosynthesis glucosyltransferase MdoH
compare
EX31
_RS03900
-0.6
-3.1
molecular chaperone DnaK
compare
EX31
_RS09685
-0.6
-2.6
GNAT family N-acetyltransferase
compare
EX31
_RS10020
-0.6
-1.5
YciI family protein
compare
EX31
_RS06690
-0.6
-1.6
hypothetical protein
compare
EX31
_RS02295
-0.6
-2.0
gluconate 2-dehydrogenase subunit 3 family protein
compare
EX31
_RS25680
-0.6
-3.1
PhoP/PhoQ regulator MgrB
compare
EX31
_RS07015
-0.6
-1.5
xanthine dehydrogenase accessory protein XdhC
compare
EX31
_RS23440
-0.6
-1.2
2-oxoglutarate dehydrogenase E1 component
compare
EX31
_RS22750
-0.6
-2.2
phosphoribosylaminoimidazolesuccinocarboxamide synthase
compare
EX31
_RS01085
-0.6
-1.6
ATP-binding cassette domain-containing protein
compare
EX31
_RS10380
-0.6
-2.6
DUF4440 domain-containing protein
compare
EX31
_RS08595
-0.6
-1.9
transcription elongation factor GreA
compare
EX31
_RS20865
-0.6
-1.4
bacteriocin immunity protein
compare
EX31
_RS25290
-0.6
-1.7
hypothetical protein
compare
EX31
_RS11110
-0.5
-1.3
RidA family protein
compare
EX31
_RS24450
-0.5
-1.2
aminodeoxychorismate lyase
compare
EX31
_RS25415
-0.5
-0.7
helix-turn-helix domain-containing protein
compare
EX31
_RS07460
-0.5
-1.9
NAD(P)-binding domain-containing protein
compare
EX31
_RS23500
-0.5
-1.7
peptidoglycan-associated lipoprotein Pal
compare
EX31
_RS07050
-0.5
-1.9
sugar ABC transporter permease
compare
EX31
_RS02665
-0.5
-2.9
glutathione synthase
compare
EX31
_RS06955
-0.5
-1.6
hypothetical protein
compare
EX31
_RS01960
-0.5
-1.4
DUF2931 family protein
compare
EX31
_RS18925
-0.5
-2.9
ABC transporter ATP-binding protein
compare
EX31
_RS11115
-0.5
-1.8
creatininase family protein
compare
EX31
_RS07380
-0.5
-1.1
redox-regulated ATPase YchF
compare
EX31
_RS11625
-0.5
-0.9
hypothetical protein
compare
EX31
_RS20090
-0.5
-1.6
tRNA-Ala
compare
EX31
_RS20180
-0.5
-1.0
phosphocarrier protein Hpr
compare
EX31
_RS00550
-0.5
-2.8
cytochrome b/b6 domain-containing protein
compare
EX31
_RS12825
-0.5
-2.9
ornithine carbamoyltransferase
compare
EX31
_RS24600
-0.5
-1.2
hypothetical protein
compare
EX31
_RS03695
-0.5
-1.9
3-isopropylmalate dehydratase small subunit
compare
EX31
_RS07225
-0.5
-2.1
membrane dipeptidase
compare
EX31
_RS02110
-0.5
-1.4
L-rhamnose mutarotase
compare
EX31
_RS11635
-0.5
-1.5
transcriptional antiterminator BglG
compare
EX31
_RS02790
-0.5
-2.2
low molecular weight phosphotyrosine protein phosphatase
compare
EX31
_RS11240
-0.5
-1.4
GNAT family N-acetyltransferase
compare
EX31
_RS12385
-0.5
-3.7
RNase adapter RapZ
compare
EX31
_RS20020
-0.5
-2.2
GNAT family N-acetyltransferase
compare
EX31
_RS00610
-0.5
-2.1
heme utilization cystosolic carrier protein HutX
compare
EX31
_RS14410
-0.5
-4.1
glycosyltransferase family 9 protein
compare
EX31
_RS09760
-0.4
-1.5
D-xylose ABC transporter substrate-binding protein
compare
EX31
_RS10090
-0.4
-1.2
NAD-dependent epimerase
compare
EX31
_RS17710
-0.4
-2.1
hypothetical protein
compare
EX31
_RS10815
-0.4
-1.8
oxidoreductase
compare
EX31
_RS20940
-0.4
-1.0
AlpA family transcriptional regulator
compare
EX31
_RS04775
-0.4
-2.5
Hsp33 family molecular chaperone HslO
compare
EX31
_RS07360
-0.4
-1.9
protease modulator HflC
compare
EX31
_RS09495
-0.4
-1.6
DUF4186 domain-containing protein
compare
EX31
_RS15875
-0.4
-3.6
nitrogen regulation protein NR(II)
compare
EX31
_RS10750
-0.4
-1.2
chromate transporter
compare
EX31
_RS09605
-0.4
-1.6
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
compare
EX31
_RS10190
-0.4
-1.8
glycosyltransferase
compare
EX31
_RS01650
-0.4
-1.8
hypothetical protein
compare
EX31
_RS24250
-0.4
-2.6
glucan biosynthesis protein G
compare
EX31
_RS06245
-0.4
-1.2
hypothetical protein
compare
EX31
_RS01970
-0.4
-0.6
hypothetical protein
compare
EX31
_RS01920
-0.4
-1.4
hypothetical protein
compare
EX31
_RS12400
-0.4
-0.8
RNA polymerase factor sigma-54
compare
EX31
_RS17285
-0.4
-1.5
carboxy-S-adenosyl-L-methionine synthase CmoA
compare
EX31
_RS25130
-0.4
-1.6
DUF1328 domain-containing protein
compare
EX31
_RS11540
-0.4
-1.1
dCTP deaminase
compare
EX31
_RS13980
-0.4
-1.4
lipoate--protein ligase A
compare
EX31
_RS20000
-0.4
-1.7
nuclear transport factor 2 family protein
compare
EX31
_RS07525
-0.4
-1.5
sulfurtransferase
compare
EX31
_RS21895
-0.4
-3.5
phosphoribosylformylglycinamidine synthase
compare
EX31
_RS00600
-0.4
-1.0
DUF1471 domain-containing protein
compare
EX31
_RS21440
-0.4
-1.9
arginine exporter ArgO
compare
EX31
_RS00805
-0.4
-1.6
translesion error-prone DNA polymerase V subunit UmuC
compare
EX31
_RS02000
-0.4
-2.3
hypothetical protein
compare
EX31
_RS01195
-0.4
-2.2
SDR family oxidoreductase
compare
EX31
_RS24395
-0.4
-1.5
ribonuclease E
compare
EX31
_RS02490
-0.4
-1.6
3-oxoacyl-ACP synthase
compare
EX31
_RS18485
-0.4
-1.4
Tat proofreading chaperone DmsD
compare
EX31
_RS21280
-0.4
-1.0
hydroxymyristoyl-ACP dehydratase
compare
EX31
_RS09775
-0.4
-0.9
(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase
compare
EX31
_RS24670
-0.4
-1.5
peptidoglycan editing factor PgeF
compare
EX31
_RS21220
-0.4
-2.5
LysR family transcriptional regulator
compare
EX31
_RS09210
-0.4
-1.4
hypothetical protein
compare
EX31
_RS00985
-0.4
-1.4
type VI secretion protein
compare
EX31
_RS09980
-0.4
-2.6
tryptophan synthase subunit alpha
compare
EX31
_RS14325
-0.4
-3.3
envelope stress sensor histidine kinase CpxA
compare
EX31
_RS02780
-0.4
-1.6
oligosaccharide flippase family protein
compare
EX31
_RS06985
-0.4
-1.2
iron export ABC transporter permease subunit FetB
compare
EX31
_RS00170
-0.4
-1.0
DUF1471 domain-containing protein
compare
EX31
_RS02310
-0.4
-0.6
hypothetical protein
compare
EX31
_RS06945
-0.4
-1.3
helix-turn-helix domain-containing protein
compare
EX31
_RS02485
-0.4
-2.3
hypothetical protein
compare
EX31
_RS09600
-0.4
-1.2
flagellar type III secretion system protein FliR
compare
EX31
_RS03645
-0.4
-1.2
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
compare
EX31
_RS01090
-0.4
-1.1
metal ABC transporter permease
compare
EX31
_RS22695
-0.4
-2.6
phosphoribosylformylglycinamidine cyclo-ligase
compare
EX31
_RS02280
-0.4
-2.3
PTS N,N'-diacetylchitobiose transporter subunit IIC
compare
EX31
_RS09115
-0.4
-1.8
ABC transporter ATP-binding protein
compare
EX31
_RS15085
-0.4
-1.5
lipid III flippase WzxE
compare
EX31
_RS08825
-0.4
-3.2
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
compare
EX31
_RS09515
-0.4
-1.5
GNAT family N-acetyltransferase
compare
EX31
_RS13415
-0.4
-1.4
Lrp/AsnC family transcriptional regulator
compare
EX31
_RS22150
-0.4
-2.3
aldo/keto reductase
compare
EX31
_RS00540
-0.4
-1.5
pentapeptide MXKDX repeat protein
compare
EX31
_RS14180
-0.4
-3.2
argininosuccinate lyase
compare
EX31
_RS16860
-0.4
-3.2
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
compare
EX31
_RS14320
-0.4
-1.0
envelope stress response regulator transcription factor CpxR
compare
EX31
_RS18935
-0.4
-2.1
sugar phosphotransferase
compare
EX31
_RS01985
-0.4
-1.6
type VI secretion system lipoprotein TssJ
compare
EX31
_RS02180
-0.4
-0.9
peptide-methionine (R)-S-oxide reductase MsrB
compare
EX31
_RS11690
-0.4
-0.7
dihydroneopterin triphosphate diphosphatase
compare
EX31
_RS16855
-0.4
-2.9
phosphoribosylamine--glycine ligase
compare
EX31
_RS13930
-0.4
-2.7
AI-2E family transporter YdiK
compare
EX31
_RS01840
-0.4
-1.5
PAS domain-containing protein
compare
EX31
_RS06615
-0.4
-1.9
electron transport complex subunit RsxB
compare
EX31
_RS00330
-0.4
-1.3
drug:proton antiporter
compare
EX31
_RS17985
-0.4
-1.1
acylphosphatase
compare
EX31
_RS19115
-0.4
-2.6
phosphatase PAP2 family protein
compare
EX31
_RS07200
-0.4
-2.4
FNR family transcription factor
compare
EX31
_RS00190
-0.4
-1.5
H-NS histone family protein
compare
EX31
_RS26010
-0.4
-1.1
YnhF family membrane protein
compare
EX31
_RS16800
-0.4
-1.9
sulfur carrier protein ThiS
compare
EX31
_RS02525
-0.4
-2.2
ABC transporter permease
compare
EX31
_RS01280
-0.4
-1.0
SgcJ/EcaC family oxidoreductase
compare
EX31
_RS03010
-0.4
-2.3
helix-turn-helix domain-containing protein
compare
EX31
_RS06925
-0.4
-1.6
transglycosylase SLT domain-containing protein
compare
EX31
_RS00925
-0.4
-2.0
glycosyltransferase family 9 protein
compare
EX31
_RS23170
-0.4
-2.2
amino acid ABC transporter permease
compare
EX31
_RS10595
-0.3
-1.2
ribonuclease D
compare
EX31
_RS10000
-0.3
-1.5
UPF0259 family protein
compare
EX31
_RS25105
-0.3
-0.7
DUF2474 domain-containing protein
compare
EX31
_RS25225
-0.3
-1.3
hypothetical protein
compare
EX31
_RS10725
-0.3
-0.7
plasmid maintenance protein CcdB
compare
EX31
_RS25725
-0.3
-0.7
hypothetical protein
compare
EX31
_RS22320
-0.3
-2.5
ammonium transporter AmtB
compare
EX31
_RS25470
-0.3
-1.2
LysR family transcriptional regulator
compare
EX31
_RS00905
-0.3
-1.4
ester cyclase
compare
EX31
_RS12435
-0.3
-3.0
phospholipid ABC transporter ATP-binding protein MlaF
compare
EX31
_RS02510
-0.3
-2.0
4'-phosphopantetheinyl transferase superfamily protein
compare
EX31
_RS18810
-0.3
-1.8
GNAT family N-acetyltransferase
compare
EX31
_RS01405
-0.3
-2.0
hypothetical protein
compare
EX31
_RS07470
-0.3
-1.1
hypothetical protein
compare
EX31
_RS24260
-0.3
-0.7
YceK/YidQ family lipoprotein
compare
EX31
_RS00350
-0.3
-2.1
exodeoxyribonuclease X
compare
EX31
_RS08515
-0.3
-3.0
lipoprotein NlpI
compare
EX31
_RS22785
-0.3
-1.0
YpfN family protein
compare
EX31
_RS18800
-0.3
-1.6
DMT family transporter
compare
Specific Phenotypes
None in this experiment
For Rahnella sp. WP5 in nl-ccm_agar experiments