Experiment set4S175 for Rahnella sp. WP5

Compare to:

NL-CCM_agar

200 most important genes:

  gene name fitness t score description  
EX31_RS14340 -2.4 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS10035 -1.7 -1.9 cardiolipin synthase compare
EX31_RS09580 -1.6 -2.4 flagellar motor switch protein FliN compare
EX31_RS13815 -1.6 -1.9 ribonuclease T compare
EX31_RS03220 -1.5 -1.8 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS12875 -1.3 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS21020 -1.3 -1.7 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS14405 -1.2 -1.7 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS18255 -1.2 -3.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS01885 -1.2 -2.8 type IV secretion protein Rhs compare
EX31_RS01390 -1.1 -1.4 hypothetical protein compare
EX31_RS05825 -1.1 -1.5 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS08140 -1.1 -2.2 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS11840 -1.1 -8.0 diacylglycerol kinase compare
EX31_RS22145 -1.1 -2.2 phosphatidylglycerophosphatase A compare
EX31_RS02520 -1.1 -1.7 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS06055 -1.1 -2.5 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS02560 -1.0 -1.3 hypothetical protein compare
EX31_RS16625 -1.0 -1.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS21470 -1.0 -5.5 phosphoglycerate dehydrogenase compare
EX31_RS08745 -1.0 -1.1 50S ribosomal protein L9 compare
EX31_RS17835 -1.0 -1.9 PTS transporter subunit EIIB compare
EX31_RS13045 -1.0 -6.7 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS01510 -0.9 -3.3 DinI-like family protein compare
EX31_RS15880 -0.9 -5.4 nitrogen regulation protein NR(I) compare
EX31_RS20655 -0.9 -2.0 hypothetical protein compare
EX31_RS17290 -0.9 -2.7 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS22430 -0.9 -1.2 hemolysin expression modulator Hha compare
EX31_RS07520 -0.9 -1.9 ornithine cyclodeaminase compare
EX31_RS22250 -0.9 -2.1 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS03710 -0.8 -1.4 glucose uptake inhibitor SgrT compare
EX31_RS23245 -0.8 -7.4 asparagine synthase B compare
EX31_RS18450 -0.8 -1.2 hypothetical protein compare
EX31_RS22800 -0.8 -2.0 ArsC family reductase compare
EX31_RS06595 -0.8 -2.0 electron transport complex subunit E compare
EX31_RS10515 -0.8 -3.1 disulfide bond formation protein DsbB compare
EX31_RS09905 -0.8 -3.4 protease SohB compare
EX31_RS09170 -0.8 -1.9 ABC transporter ATP-binding protein compare
EX31_RS23895 -0.7 -3.3 TetR/AcrR family transcriptional regulator compare
EX31_RS23320 -0.7 -2.5 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS09490 -0.7 -0.9 hypothetical protein compare
EX31_RS00450 -0.7 -2.4 methionine-R-sulfoxide reductase compare
EX31_RS04035 -0.7 -5.6 phosphoserine phosphatase compare
EX31_RS02920 -0.7 -1.7 glycosyltransferase compare
EX31_RS02270 -0.7 -2.5 transcriptional regulator ChbR compare
EX31_RS14550 -0.7 -1.6 Trk system potassium transporter TrkH compare
EX31_RS15905 -0.7 -5.7 DNA polymerase I compare
EX31_RS02130 -0.7 -2.5 amino acid-binding protein compare
EX31_RS23880 -0.7 -1.8 DUF1471 domain-containing protein compare
EX31_RS18525 -0.7 -1.8 DNA translocase FtsK compare
EX31_RS06780 -0.7 -2.6 glucose 1-dehydrogenase compare
EX31_RS02385 -0.7 -1.1 hypothetical protein compare
EX31_RS16645 -0.6 -1.3 DUF1471 domain-containing protein compare
EX31_RS26000 -0.6 -1.3 GntR family transcriptional regulator compare
EX31_RS06620 -0.6 -2.7 electron transport complex subunit RsxA compare
EX31_RS24255 -0.6 -5.3 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS03900 -0.6 -3.1 molecular chaperone DnaK compare
EX31_RS09685 -0.6 -2.6 GNAT family N-acetyltransferase compare
EX31_RS10020 -0.6 -1.5 YciI family protein compare
EX31_RS06690 -0.6 -1.6 hypothetical protein compare
EX31_RS02295 -0.6 -2.0 gluconate 2-dehydrogenase subunit 3 family protein compare
EX31_RS25680 -0.6 -3.1 PhoP/PhoQ regulator MgrB compare
EX31_RS07015 -0.6 -1.5 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS23440 -0.6 -1.2 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS22750 -0.6 -2.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS01085 -0.6 -1.6 ATP-binding cassette domain-containing protein compare
EX31_RS10380 -0.6 -2.6 DUF4440 domain-containing protein compare
EX31_RS08595 -0.6 -1.9 transcription elongation factor GreA compare
EX31_RS20865 -0.6 -1.4 bacteriocin immunity protein compare
EX31_RS25290 -0.6 -1.7 hypothetical protein compare
EX31_RS11110 -0.5 -1.3 RidA family protein compare
EX31_RS24450 -0.5 -1.2 aminodeoxychorismate lyase compare
EX31_RS25415 -0.5 -0.7 helix-turn-helix domain-containing protein compare
EX31_RS07460 -0.5 -1.9 NAD(P)-binding domain-containing protein compare
EX31_RS23500 -0.5 -1.7 peptidoglycan-associated lipoprotein Pal compare
EX31_RS07050 -0.5 -1.9 sugar ABC transporter permease compare
EX31_RS02665 -0.5 -2.9 glutathione synthase compare
EX31_RS06955 -0.5 -1.6 hypothetical protein compare
EX31_RS01960 -0.5 -1.4 DUF2931 family protein compare
EX31_RS18925 -0.5 -2.9 ABC transporter ATP-binding protein compare
EX31_RS11115 -0.5 -1.8 creatininase family protein compare
EX31_RS07380 -0.5 -1.1 redox-regulated ATPase YchF compare
EX31_RS11625 -0.5 -0.9 hypothetical protein compare
EX31_RS20090 -0.5 -1.6 tRNA-Ala compare
EX31_RS20180 -0.5 -1.0 phosphocarrier protein Hpr compare
EX31_RS00550 -0.5 -2.8 cytochrome b/b6 domain-containing protein compare
EX31_RS12825 -0.5 -2.9 ornithine carbamoyltransferase compare
EX31_RS24600 -0.5 -1.2 hypothetical protein compare
EX31_RS03695 -0.5 -1.9 3-isopropylmalate dehydratase small subunit compare
EX31_RS07225 -0.5 -2.1 membrane dipeptidase compare
EX31_RS02110 -0.5 -1.4 L-rhamnose mutarotase compare
EX31_RS11635 -0.5 -1.5 transcriptional antiterminator BglG compare
EX31_RS02790 -0.5 -2.2 low molecular weight phosphotyrosine protein phosphatase compare
EX31_RS11240 -0.5 -1.4 GNAT family N-acetyltransferase compare
EX31_RS12385 -0.5 -3.7 RNase adapter RapZ compare
EX31_RS20020 -0.5 -2.2 GNAT family N-acetyltransferase compare
EX31_RS00610 -0.5 -2.1 heme utilization cystosolic carrier protein HutX compare
EX31_RS14410 -0.5 -4.1 glycosyltransferase family 9 protein compare
EX31_RS09760 -0.4 -1.5 D-xylose ABC transporter substrate-binding protein compare
EX31_RS10090 -0.4 -1.2 NAD-dependent epimerase compare
EX31_RS17710 -0.4 -2.1 hypothetical protein compare
EX31_RS10815 -0.4 -1.8 oxidoreductase compare
EX31_RS20940 -0.4 -1.0 AlpA family transcriptional regulator compare
EX31_RS04775 -0.4 -2.5 Hsp33 family molecular chaperone HslO compare
EX31_RS07360 -0.4 -1.9 protease modulator HflC compare
EX31_RS09495 -0.4 -1.6 DUF4186 domain-containing protein compare
EX31_RS15875 -0.4 -3.6 nitrogen regulation protein NR(II) compare
EX31_RS10750 -0.4 -1.2 chromate transporter compare
EX31_RS09605 -0.4 -1.6 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC compare
EX31_RS10190 -0.4 -1.8 glycosyltransferase compare
EX31_RS01650 -0.4 -1.8 hypothetical protein compare
EX31_RS24250 -0.4 -2.6 glucan biosynthesis protein G compare
EX31_RS06245 -0.4 -1.2 hypothetical protein compare
EX31_RS01970 -0.4 -0.6 hypothetical protein compare
EX31_RS01920 -0.4 -1.4 hypothetical protein compare
EX31_RS12400 -0.4 -0.8 RNA polymerase factor sigma-54 compare
EX31_RS17285 -0.4 -1.5 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS25130 -0.4 -1.6 DUF1328 domain-containing protein compare
EX31_RS11540 -0.4 -1.1 dCTP deaminase compare
EX31_RS13980 -0.4 -1.4 lipoate--protein ligase A compare
EX31_RS20000 -0.4 -1.7 nuclear transport factor 2 family protein compare
EX31_RS07525 -0.4 -1.5 sulfurtransferase compare
EX31_RS21895 -0.4 -3.5 phosphoribosylformylglycinamidine synthase compare
EX31_RS00600 -0.4 -1.0 DUF1471 domain-containing protein compare
EX31_RS21440 -0.4 -1.9 arginine exporter ArgO compare
EX31_RS00805 -0.4 -1.6 translesion error-prone DNA polymerase V subunit UmuC compare
EX31_RS02000 -0.4 -2.3 hypothetical protein compare
EX31_RS01195 -0.4 -2.2 SDR family oxidoreductase compare
EX31_RS24395 -0.4 -1.5 ribonuclease E compare
EX31_RS02490 -0.4 -1.6 3-oxoacyl-ACP synthase compare
EX31_RS18485 -0.4 -1.4 Tat proofreading chaperone DmsD compare
EX31_RS21280 -0.4 -1.0 hydroxymyristoyl-ACP dehydratase compare
EX31_RS09775 -0.4 -0.9 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS24670 -0.4 -1.5 peptidoglycan editing factor PgeF compare
EX31_RS21220 -0.4 -2.5 LysR family transcriptional regulator compare
EX31_RS09210 -0.4 -1.4 hypothetical protein compare
EX31_RS00985 -0.4 -1.4 type VI secretion protein compare
EX31_RS09980 -0.4 -2.6 tryptophan synthase subunit alpha compare
EX31_RS14325 -0.4 -3.3 envelope stress sensor histidine kinase CpxA compare
EX31_RS02780 -0.4 -1.6 oligosaccharide flippase family protein compare
EX31_RS06985 -0.4 -1.2 iron export ABC transporter permease subunit FetB compare
EX31_RS00170 -0.4 -1.0 DUF1471 domain-containing protein compare
EX31_RS02310 -0.4 -0.6 hypothetical protein compare
EX31_RS06945 -0.4 -1.3 helix-turn-helix domain-containing protein compare
EX31_RS02485 -0.4 -2.3 hypothetical protein compare
EX31_RS09600 -0.4 -1.2 flagellar type III secretion system protein FliR compare
EX31_RS03645 -0.4 -1.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS01090 -0.4 -1.1 metal ABC transporter permease compare
EX31_RS22695 -0.4 -2.6 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS02280 -0.4 -2.3 PTS N,N'-diacetylchitobiose transporter subunit IIC compare
EX31_RS09115 -0.4 -1.8 ABC transporter ATP-binding protein compare
EX31_RS15085 -0.4 -1.5 lipid III flippase WzxE compare
EX31_RS08825 -0.4 -3.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS09515 -0.4 -1.5 GNAT family N-acetyltransferase compare
EX31_RS13415 -0.4 -1.4 Lrp/AsnC family transcriptional regulator compare
EX31_RS22150 -0.4 -2.3 aldo/keto reductase compare
EX31_RS00540 -0.4 -1.5 pentapeptide MXKDX repeat protein compare
EX31_RS14180 -0.4 -3.2 argininosuccinate lyase compare
EX31_RS16860 -0.4 -3.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS14320 -0.4 -1.0 envelope stress response regulator transcription factor CpxR compare
EX31_RS18935 -0.4 -2.1 sugar phosphotransferase compare
EX31_RS01985 -0.4 -1.6 type VI secretion system lipoprotein TssJ compare
EX31_RS02180 -0.4 -0.9 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS11690 -0.4 -0.7 dihydroneopterin triphosphate diphosphatase compare
EX31_RS16855 -0.4 -2.9 phosphoribosylamine--glycine ligase compare
EX31_RS13930 -0.4 -2.7 AI-2E family transporter YdiK compare
EX31_RS01840 -0.4 -1.5 PAS domain-containing protein compare
EX31_RS06615 -0.4 -1.9 electron transport complex subunit RsxB compare
EX31_RS00330 -0.4 -1.3 drug:proton antiporter compare
EX31_RS17985 -0.4 -1.1 acylphosphatase compare
EX31_RS19115 -0.4 -2.6 phosphatase PAP2 family protein compare
EX31_RS07200 -0.4 -2.4 FNR family transcription factor compare
EX31_RS00190 -0.4 -1.5 H-NS histone family protein compare
EX31_RS26010 -0.4 -1.1 YnhF family membrane protein compare
EX31_RS16800 -0.4 -1.9 sulfur carrier protein ThiS compare
EX31_RS02525 -0.4 -2.2 ABC transporter permease compare
EX31_RS01280 -0.4 -1.0 SgcJ/EcaC family oxidoreductase compare
EX31_RS03010 -0.4 -2.3 helix-turn-helix domain-containing protein compare
EX31_RS06925 -0.4 -1.6 transglycosylase SLT domain-containing protein compare
EX31_RS00925 -0.4 -2.0 glycosyltransferase family 9 protein compare
EX31_RS23170 -0.4 -2.2 amino acid ABC transporter permease compare
EX31_RS10595 -0.3 -1.2 ribonuclease D compare
EX31_RS10000 -0.3 -1.5 UPF0259 family protein compare
EX31_RS25105 -0.3 -0.7 DUF2474 domain-containing protein compare
EX31_RS25225 -0.3 -1.3 hypothetical protein compare
EX31_RS10725 -0.3 -0.7 plasmid maintenance protein CcdB compare
EX31_RS25725 -0.3 -0.7 hypothetical protein compare
EX31_RS22320 -0.3 -2.5 ammonium transporter AmtB compare
EX31_RS25470 -0.3 -1.2 LysR family transcriptional regulator compare
EX31_RS00905 -0.3 -1.4 ester cyclase compare
EX31_RS12435 -0.3 -3.0 phospholipid ABC transporter ATP-binding protein MlaF compare
EX31_RS02510 -0.3 -2.0 4'-phosphopantetheinyl transferase superfamily protein compare
EX31_RS18810 -0.3 -1.8 GNAT family N-acetyltransferase compare
EX31_RS01405 -0.3 -2.0 hypothetical protein compare
EX31_RS07470 -0.3 -1.1 hypothetical protein compare
EX31_RS24260 -0.3 -0.7 YceK/YidQ family lipoprotein compare
EX31_RS00350 -0.3 -2.1 exodeoxyribonuclease X compare
EX31_RS08515 -0.3 -3.0 lipoprotein NlpI compare
EX31_RS22785 -0.3 -1.0 YpfN family protein compare
EX31_RS18800 -0.3 -1.6 DMT family transporter compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm_agar experiments