Experiment set4S172 for Rahnella sp. WP5

200 most important genes:

gene	name	fitness	t score	description
EX31_RS11675		-3.7	-4.3	Holliday junction branch migration protein RuvA
EX31_RS21020		-2.6	-3.1	D-sedoheptulose 7-phosphate isomerase
EX31_RS14405		-2.6	-3.1	lipopolysaccharide heptosyltransferase RfaC
EX31_RS23490		-2.6	-3.1	cell envelope integrity protein TolA
EX31_RS23320		-2.6	-6.4	alpha-D-glucose phosphate-specific phosphoglucomutase
EX31_RS03645		-2.4	-4.0	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
EX31_RS11525		-2.4	-4.6	UTP--glucose-1-phosphate uridylyltransferase GalU
EX31_RS03790		-2.3	-3.5	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
EX31_RS08140		-2.2	-4.0	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
EX31_RS23500		-2.1	-3.9	peptidoglycan-associated lipoprotein Pal
EX31_RS05825		-2.1	-2.0	mannitol-1-phosphate 5-dehydrogenase
EX31_RS15085		-2.0	-6.3	lipid III flippase WzxE
EX31_RS11840		-1.9	-11.2	diacylglycerol kinase
EX31_RS25105		-1.8	-2.3	DUF2474 domain-containing protein
EX31_RS21895		-1.8	-13.0	phosphoribosylformylglycinamidine synthase
EX31_RS14400		-1.8	-5.4	ADP-heptose--LPS heptosyltransferase RfaF
EX31_RS03250		-1.8	-9.5	RNA polymerase-binding protein DksA
EX31_RS15095		-1.8	-2.9	O-antigen assembly polymerase
EX31_RS16855		-1.7	-9.9	phosphoribosylamine--glycine ligase
EX31_RS15555		-1.7	-3.7	amino acid ABC transporter ATP-binding protein
EX31_RS14435		-1.6	-7.4	glycosyltransferase family 4 protein
EX31_RS16860		-1.6	-12.2	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
EX31_RS12400		-1.6	-1.5	RNA polymerase factor sigma-54
EX31_RS22750		-1.6	-3.2	phosphoribosylaminoimidazolesuccinocarboxamide synthase
EX31_RS22625		-1.5	-2.7	5-(carboxyamino)imidazole ribonucleotide mutase
EX31_RS10535		-1.5	-2.2	GtrA family protein
EX31_RS22695		-1.5	-6.9	phosphoribosylformylglycinamidine cyclo-ligase
EX31_RS11490		-1.5	-4.8	glycosyltransferase
EX31_RS07830		-1.5	-6.8	murein hydrolase activator NlpD
EX31_RS19570		-1.4	-8.4	amidophosphoribosyltransferase
EX31_RS02520		-1.3	-1.3	sigma-54-dependent Fis family transcriptional regulator
EX31_RS23785		-1.3	-2.6	DUF262 domain-containing protein
EX31_RS14445		-1.3	-6.0	glycosyltransferase family 2 protein
EX31_RS23495		-1.3	-5.4	Tol-Pal system protein TolB
EX31_RS18255		-1.3	-3.2	3-phosphoserine/phosphohydroxythreonine transaminase
EX31_RS15870		-1.3	-2.5	glutamate--ammonia ligase
EX31_RS23485		-1.2	-1.5	colicin uptake protein TolR
EX31_RS23440		-1.2	-2.0	2-oxoglutarate dehydrogenase E1 component
EX31_RS15880		-1.2	-6.0	nitrogen regulation protein NR(I)
EX31_RS23480		-1.2	-3.2	Tol-Pal system protein TolQ
EX31_RS01970		-1.2	-1.3	hypothetical protein
EX31_RS12875		-1.2	-2.2	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
EX31_RS22620		-1.1	-4.7	5-(carboxyamino)imidazole ribonucleotide synthase
EX31_RS24600		-1.1	-2.1	hypothetical protein
EX31_RS06955		-1.1	-2.7	hypothetical protein
EX31_RS04035		-1.1	-7.6	phosphoserine phosphatase
EX31_RS06055		-1.1	-2.4	phosphate ABC transporter ATP-binding protein PstB
EX31_RS11540		-1.1	-2.8	dCTP deaminase
EX31_RS00585		-1.1	-2.9	multidrug efflux SMR transporter
EX31_RS13045		-1.1	-6.9	bifunctional uridylyltransferase/uridylyl-removing protein GlnD
EX31_RS14410		-1.0	-9.3	glycosyltransferase family 9 protein
EX31_RS01710		-1.0	-1.9	hypothetical protein
EX31_RS02920		-1.0	-2.3	glycosyltransferase
EX31_RS20735		-1.0	-2.7	exodeoxyribonuclease V subunit beta
EX31_RS13740		-1.0	-1.3	glutathione transferase GstA
EX31_RS01885		-1.0	-1.5	type IV secretion protein Rhs
EX31_RS24145		-1.0	-5.5	UvrY/SirA/GacA family response regulator transcription factor
EX31_RS19795		-1.0	-1.7	hypothetical protein
EX31_RS11010		-1.0	-1.4	DgsA anti-repressor MtfA
EX31_RS25415		-1.0	-1.2	helix-turn-helix domain-containing protein
EX31_RS20495		-0.9	-4.2	outer membrane protein assembly factor BamB
EX31_RS11510		-0.9	-3.5	dTDP-4-dehydrorhamnose 3,5-epimerase
EX31_RS22430		-0.9	-1.2	hemolysin expression modulator Hha
EX31_RS07955		-0.9	-7.3	GTP diphosphokinase
EX31_RS14415		-0.9	-5.0	sugar glycosyltransferase
EX31_RS00450		-0.9	-2.5	methionine-R-sulfoxide reductase
EX31_RS07555		-0.9	-2.5	glucose 1-dehydrogenase
EX31_RS01695		-0.9	-2.0	RusA family crossover junction endodeoxyribonuclease
EX31_RS02790		-0.9	-2.8	low molecular weight phosphotyrosine protein phosphatase
EX31_RS08745		-0.9	-1.0	50S ribosomal protein L9
EX31_RS22245		-0.9	-1.5	ATP-dependent Clp endopeptidase proteolytic subunit ClpP
EX31_RS10360		-0.9	-2.3	ClbS/DfsB family four-helix bundle protein
EX31_RS14770		-0.8	-2.0	hypothetical protein
EX31_RS01920		-0.8	-1.8	hypothetical protein
EX31_RS15165		-0.8	-3.5	tyrosine recombinase XerC
EX31_RS22320		-0.8	-5.5	ammonium transporter AmtB
EX31_RS07525		-0.8	-2.4	sulfurtransferase
EX31_RS20870		-0.8	-2.7	colicin
EX31_RS03570		-0.8	-1.3	DUF721 domain-containing protein
EX31_RS12520		-0.8	-6.0	aerobic respiration two-component sensor histidine kinase ArcB
EX31_RS22715		-0.8	-2.3	arsenate reductase (glutaredoxin)
EX31_RS07520		-0.8	-1.5	ornithine cyclodeaminase
EX31_RS10035		-0.8	-1.0	cardiolipin synthase
EX31_RS18940		-0.8	-3.5	glycosyltransferase family 61 protein
EX31_RS06810		-0.8	-1.0	LysR family transcriptional regulator
EX31_RS07535		-0.8	-2.7	cytochrome b/b6 domain-containing protein
EX31_RS10020		-0.8	-1.6	YciI family protein
EX31_RS01965		-0.8	-1.7	DUF2931 family protein
EX31_RS13745		-0.8	-2.2	pyridoxal kinase PdxY
EX31_RS11500		-0.8	-0.9	glycosyltransferase family 2 protein
EX31_RS20405		-0.7	-3.4	class I SAM-dependent methyltransferase
EX31_RS07135		-0.7	-1.8	hypothetical protein
EX31_RS23560		-0.7	-2.8	phosphate starvation-inducible protein
EX31_RS18540		-0.7	-0.5	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD
EX31_RS18525		-0.7	-2.0	DNA translocase FtsK
EX31_RS23630		-0.7	-3.0	transcriptional regulator
EX31_RS24855		-0.7	-2.7	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF
EX31_RS09520		-0.7	-1.2	hypothetical protein
EX31_RS09650		-0.7	-1.7	GrxA family glutaredoxin
EX31_RS18945		-0.7	-2.4	CatB-related O-acetyltransferase
EX31_RS10595		-0.7	-1.8	ribonuclease D
EX31_RS25095		-0.7	-1.6	hypothetical protein
EX31_RS02200		-0.7	-3.3	Hcp family type VI secretion system effector
EX31_RS16675		-0.7	-2.2	histidine utilization repressor
EX31_RS12385		-0.7	-5.7	RNase adapter RapZ
EX31_RS13480		-0.7	-3.3	site-specific tyrosine recombinase XerD
EX31_RS25300		-0.7	-1.1	YqaE/Pmp3 family membrane protein
EX31_RS09600		-0.7	-1.7	flagellar type III secretion system protein FliR
EX31_RS24560		-0.7	-2.2	two-component system response regulator PhoP
EX31_RS03220		-0.7	-1.1	Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC
EX31_RS01605		-0.7	-1.5	tail protein
EX31_RS24880		-0.7	-5.7	carboxy terminal-processing peptidase
EX31_RS14005		-0.7	-1.4	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase
EX31_RS25595		-0.7	-1.2	hypothetical protein
EX31_RS09925		-0.7	-2.1	alpha-ribazole phosphatase
EX31_RS01715		-0.7	-1.5	DNA replication protein
EX31_RS24670		-0.7	-1.9	peptidoglycan editing factor PgeF
EX31_RS22680		-0.6	-3.9	polyphosphate kinase 1
EX31_RS02130		-0.6	-2.1	amino acid-binding protein
EX31_RS09265		-0.6	-2.1	L-Ala-D/L-Glu epimerase
EX31_RS09335		-0.6	-1.5	hypothetical protein
EX31_RS09760		-0.6	-2.0	D-xylose ABC transporter substrate-binding protein
EX31_RS02365		-0.6	-0.9	hypothetical protein
EX31_RS09100		-0.6	-1.5	uroporphyrinogen-III C-methyltransferase
EX31_RS12600		-0.6	-2.2	pilus assembly protein
EX31_RS01280		-0.6	-1.0	SgcJ/EcaC family oxidoreductase
EX31_RS21295		-0.6	-1.9	acyl carrier protein
EX31_RS02270		-0.6	-1.9	transcriptional regulator ChbR
EX31_RS06270		-0.6	-1.5	aldo/keto reductase
EX31_RS26000		-0.6	-1.6	GntR family transcriptional regulator
EX31_RS19575		-0.6	-4.6	colicin V production protein
EX31_RS02765		-0.6	-1.7	acetyltransferase
EX31_RS18095		-0.6	-3.0	quinone-dependent dihydroorotate dehydrogenase
EX31_RS06235		-0.6	-1.6	hypothetical protein
EX31_RS02775		-0.6	-2.5	hypothetical protein
EX31_RS07410		-0.6	-0.8	NAD(P)H-dependent oxidoreductase
EX31_RS00020		-0.6	-2.8	GntR family transcriptional regulator
EX31_RS01390		-0.6	-0.6	hypothetical protein
EX31_RS07185		-0.6	-2.6	mannosyl-3-phosphoglycerate phosphatase-related protein
EX31_RS24270		-0.6	-1.9	hypothetical protein
EX31_RS13430		-0.6	-2.7	hypothetical protein
EX31_RS00010		-0.6	-1.4	type II toxin-antitoxin system HipA family toxin
EX31_RS16425		-0.6	-1.7	DUF421 domain-containing protein
EX31_RS06890		-0.6	-1.7	isopenicillin N synthase family oxygenase
EX31_RS06765		-0.6	-2.0	histidinol-phosphate transaminase
EX31_RS08515		-0.6	-5.2	lipoprotein NlpI
EX31_RS01090		-0.6	-1.7	metal ABC transporter permease
EX31_RS08595		-0.6	-1.4	transcription elongation factor GreA
EX31_RS14520		-0.6	-3.4	DUF2971 domain-containing protein
EX31_RS24260		-0.6	-1.4	YceK/YidQ family lipoprotein
EX31_RS04320		-0.6	-1.0	hypothetical protein
EX31_RS08210		-0.6	-2.6	hypothetical protein
EX31_RS14550		-0.6	-1.3	Trk system potassium transporter TrkH
EX31_RS03310		-0.6	-1.5	hypothetical protein
EX31_RS06690		-0.6	-1.3	hypothetical protein
EX31_RS25140		-0.6	-1.4	AlpA family transcriptional regulator
EX31_RS04710		-0.6	-2.2	adenine-specific DNA-methyltransferase
EX31_RS21575		-0.6	-2.0	hypothetical protein
EX31_RS25060		-0.6	-1.8	DUF2767 family protein
EX31_RS02905		-0.6	-2.2	right-handed parallel beta-helix repeat-containing protein
EX31_RS10750		-0.6	-1.5	chromate transporter
EX31_RS06245		-0.5	-1.6	hypothetical protein
EX31_RS22570		-0.5	-2.8	conjugal transfer protein TraB
EX31_RS02910		-0.5	-2.4	hypothetical protein
EX31_RS16980		-0.5	-1.5	ATP-dependent dethiobiotin synthetase BioD
EX31_RS02515		-0.5	-0.8	PAS domain-containing protein
EX31_RS17835		-0.5	-1.2	PTS transporter subunit EIIB
EX31_RS09685		-0.5	-1.9	GNAT family N-acetyltransferase
EX31_RS05245		-0.5	-1.6	PTS sugar transporter subunit IIB
EX31_RS01255		-0.5	-1.5	Crp/Fnr family transcriptional regulator
EX31_RS01800		-0.5	-2.0	porin
EX31_RS02900		-0.5	-3.1	glycosyltransferase
EX31_RS09390		-0.5	-1.9	phosphate starvation-inducible protein PhoH
EX31_RS18795		-0.5	-2.1	DMT family transporter
EX31_RS15055		-0.5	-4.6	UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase
EX31_RS24300		-0.5	-1.0	DUF2971 domain-containing protein
EX31_RS02020		-0.5	-1.6	MFS transporter
EX31_RS07005		-0.5	-2.4	ABC transporter substrate-binding protein
EX31_RS21950		-0.5	-2.3	DUF1471 domain-containing protein
EX31_RS10025		-0.5	-1.4	hypothetical protein
EX31_RS04295		-0.5	-1.5	hypothetical protein
EX31_RS22330		-0.5	-2.2	hypothetical protein
EX31_RS11260		-0.5	-2.5	CidB/LrgB family autolysis modulator
EX31_RS07965		-0.5	-4.5	two-component sensor histidine kinase BarA
EX31_RS18290		-0.5	-1.6	phage tail assembly protein
EX31_RS12550		-0.5	-3.6	16S rRNA (cytidine(1402)-2'-O)-methyltransferase
EX31_RS20265		-0.5	-0.9	YaiI/YqxD family protein
EX31_RS26040		-0.5	-0.7	hypothetical protein
EX31_RS04390		-0.5	-1.0	DNA polymerase III subunit chi
EX31_RS06925		-0.5	-2.0	transglycosylase SLT domain-containing protein
EX31_RS10245		-0.5	-1.9	D-alanyl-D-alanine dipeptidase
EX31_RS09655		-0.5	-0.8	membrane protein
EX31_RS18935		-0.5	-1.8	sugar phosphotransferase
EX31_RS24840		-0.5	-2.0	hypothetical protein
EX31_RS26005		-0.5	-1.8	transposase
EX31_RS09165		-0.5	-1.7	FadR family transcriptional regulator
EX31_RS25410		-0.5	-0.7	transposase
EX31_RS06600		-0.5	-2.2	electron transport complex subunit RsxG
EX31_RS06920		-0.5	-2.2	GlxA family transcriptional regulator
EX31_RS06340		-0.5	-1.3	thiol peroxidase

Specific Phenotypes

For 13 genes in this experiment