Experiment set4S171 for Rahnella sp. WP5

Compare to:

NL-CCM; ambient oxygen

200 most important genes:

  gene name fitness t score description  
EX31_RS15085 -3.6 -7.4 lipid III flippase WzxE compare
EX31_RS11525 -3.0 -4.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS25910 -2.6 -2.1 hypothetical protein compare
EX31_RS23490 -2.6 -3.0 cell envelope integrity protein TolA compare
EX31_RS18255 -2.4 -4.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS23485 -2.4 -2.9 colicin uptake protein TolR compare
EX31_RS11675 -2.3 -2.8 Holliday junction branch migration protein RuvA compare
EX31_RS21895 -2.2 -14.2 phosphoribosylformylglycinamidine synthase compare
EX31_RS14400 -2.1 -5.6 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS10180 -2.0 -2.3 type II 3-dehydroquinate dehydratase compare
EX31_RS05825 -2.0 -2.0 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS10035 -2.0 -2.4 cardiolipin synthase compare
EX31_RS08140 -2.0 -3.8 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS23320 -2.0 -4.4 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS24300 -1.9 -3.1 DUF2971 domain-containing protein compare
EX31_RS04325 -1.9 -1.3 hypothetical protein compare
EX31_RS16860 -1.8 -13.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS22695 -1.8 -7.2 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS03250 -1.7 -8.2 RNA polymerase-binding protein DksA compare
EX31_RS03790 -1.7 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS22750 -1.7 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS23500 -1.7 -4.1 peptidoglycan-associated lipoprotein Pal compare
EX31_RS11840 -1.7 -11.0 diacylglycerol kinase compare
EX31_RS23480 -1.6 -4.0 Tol-Pal system protein TolQ compare
EX31_RS19570 -1.6 -9.2 amidophosphoribosyltransferase compare
EX31_RS03645 -1.6 -2.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS21020 -1.6 -2.6 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS14445 -1.5 -6.5 glycosyltransferase family 2 protein compare
EX31_RS16855 -1.5 -9.7 phosphoribosylamine--glycine ligase compare
EX31_RS25295 -1.5 -1.7 GhoT/OrtT family toxin compare
EX31_RS23495 -1.5 -5.8 Tol-Pal system protein TolB compare
EX31_RS25645 -1.5 -1.8 K(+)-transporting ATPase subunit F compare
EX31_RS11490 -1.5 -4.5 glycosyltransferase compare
EX31_RS14405 -1.5 -2.1 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS14550 -1.5 -2.7 Trk system potassium transporter TrkH compare
EX31_RS25300 -1.5 -1.3 YqaE/Pmp3 family membrane protein compare
EX31_RS11500 -1.4 -1.7 glycosyltransferase family 2 protein compare
EX31_RS23440 -1.4 -2.5 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS15880 -1.4 -8.2 nitrogen regulation protein NR(I) compare
EX31_RS04320 -1.4 -1.5 hypothetical protein compare
EX31_RS04645 -1.4 -1.3 DUF2559 family protein compare
EX31_RS24600 -1.4 -1.7 hypothetical protein compare
EX31_RS13045 -1.4 -8.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS06680 -1.3 -1.6 cellulose biosynthesis protein BcsF compare
EX31_RS20735 -1.3 -3.3 exodeoxyribonuclease V subunit beta compare
EX31_RS10000 -1.3 -4.2 UPF0259 family protein compare
EX31_RS00920 -1.3 -1.7 DUF1493 family protein compare
EX31_RS15870 -1.3 -2.3 glutamate--ammonia ligase compare
EX31_RS04710 -1.2 -3.8 adenine-specific DNA-methyltransferase compare
EX31_RS12875 -1.2 -2.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS14410 -1.2 -10.1 glycosyltransferase family 9 protein compare
EX31_RS02515 -1.2 -0.8 PAS domain-containing protein compare
EX31_RS03310 -1.2 -3.4 hypothetical protein compare
EX31_RS06340 -1.1 -1.4 thiol peroxidase compare
EX31_RS25020 -1.1 -3.2 hypothetical protein compare
EX31_RS02520 -1.1 -1.3 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS07830 -1.1 -5.3 murein hydrolase activator NlpD compare
EX31_RS07955 -1.1 -8.5 GTP diphosphokinase compare
EX31_RS11510 -1.1 -4.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
EX31_RS10090 -1.1 -2.1 NAD-dependent epimerase compare
EX31_RS22320 -1.0 -6.1 ammonium transporter AmtB compare
EX31_RS14415 -1.0 -5.7 sugar glycosyltransferase compare
EX31_RS02625 -1.0 -1.3 hypothetical protein compare
EX31_RS07525 -1.0 -1.8 sulfurtransferase compare
EX31_RS04035 -1.0 -7.0 phosphoserine phosphatase compare
EX31_RS10590 -1.0 -1.4 cell division topological specificity factor MinE compare
EX31_RS00380 -1.0 -2.0 ABC transporter ATP-binding protein compare
EX31_RS23785 -0.9 -1.9 DUF262 domain-containing protein compare
EX31_RS25135 -0.9 -1.6 hypothetical protein compare
EX31_RS22800 -0.9 -1.0 ArsC family reductase compare
EX31_RS01915 -0.9 -2.3 hypothetical protein compare
EX31_RS10825 -0.9 -1.7 hypothetical protein compare
EX31_RS24280 -0.9 -3.3 hypothetical protein compare
EX31_RS00130 -0.9 -1.5 GGDEF domain-containing protein compare
EX31_RS15095 -0.9 -2.6 O-antigen assembly polymerase compare
EX31_RS14730 -0.9 -0.8 DUF2756 domain-containing protein compare
EX31_RS11205 -0.8 -2.4 chemotaxis protein CheV compare
EX31_RS09170 -0.8 -2.3 ABC transporter ATP-binding protein compare
EX31_RS17285 -0.8 -2.3 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS09610 -0.8 -2.3 YbjO family protein compare
EX31_RS18525 -0.8 -1.8 DNA translocase FtsK compare
EX31_RS06690 -0.8 -1.3 hypothetical protein compare
EX31_RS18420 -0.8 -3.9 hypothetical protein compare
EX31_RS07015 -0.8 -2.2 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS02110 -0.8 -2.0 L-rhamnose mutarotase compare
EX31_RS09260 -0.8 -2.5 ABC transporter ATP-binding protein compare
EX31_RS22620 -0.8 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS12520 -0.8 -5.4 aerobic respiration two-component sensor histidine kinase ArcB compare
EX31_RS09065 -0.8 -2.0 molecular chaperone compare
EX31_RS01920 -0.8 -2.2 hypothetical protein compare
EX31_RS24145 -0.8 -4.0 UvrY/SirA/GacA family response regulator transcription factor compare
EX31_RS25070 -0.8 -1.0 DUF551 domain-containing protein compare
EX31_RS13480 -0.8 -2.9 site-specific tyrosine recombinase XerD compare
EX31_RS05685 -0.8 -3.0 hypothetical protein compare
EX31_RS00330 -0.8 -2.8 drug:proton antiporter compare
EX31_RS07380 -0.8 -1.1 redox-regulated ATPase YchF compare
EX31_RS18940 -0.7 -2.1 glycosyltransferase family 61 protein compare
EX31_RS25895 -0.7 -1.9 DinI-like family protein compare
EX31_RS14005 -0.7 -2.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
EX31_RS00960 -0.7 -2.1 hypothetical protein compare
EX31_RS02765 -0.7 -2.8 acetyltransferase compare
EX31_RS12510 -0.7 -4.9 FAD-dependent oxidoreductase compare
EX31_RS25555 -0.7 -1.4 GpE family phage tail protein compare
EX31_RS12550 -0.7 -4.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
EX31_RS25140 -0.7 -1.6 AlpA family transcriptional regulator compare
EX31_RS24855 -0.7 -2.8 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS15595 -0.7 -2.3 MetQ/NlpA family lipoprotein compare
EX31_RS15055 -0.7 -6.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
EX31_RS15155 -0.7 -1.1 diaminopimelate epimerase compare
EX31_RS02160 -0.7 -2.4 helix-turn-helix domain-containing protein compare
EX31_RS12400 -0.7 -1.2 RNA polymerase factor sigma-54 compare
EX31_RS10215 -0.7 -1.8 NAD(P)-dependent oxidoreductase compare
EX31_RS09920 -0.7 -2.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
EX31_RS00810 -0.7 -3.3 translesion error-prone DNA polymerase V autoproteolytic subunit compare
EX31_RS24470 -0.7 -2.5 metal-dependent hydrolase compare
EX31_RS11150 -0.7 -1.8 efflux transporter periplasmic adaptor subunit compare
EX31_RS21575 -0.7 -1.6 hypothetical protein compare
EX31_RS05245 -0.7 -2.4 PTS sugar transporter subunit IIB compare
EX31_RS24285 -0.7 -2.7 DUF1493 family protein compare
EX31_RS19575 -0.7 -4.7 colicin V production protein compare
EX31_RS10190 -0.7 -1.3 glycosyltransferase compare
EX31_RS02380 -0.7 -2.0 OsmC family protein compare
EX31_RS08925 -0.6 -2.9 entericidin A/B family lipoprotein compare
EX31_RS10920 -0.6 -2.2 transcriptional regulator RcsA compare
EX31_RS13815 -0.6 -0.9 ribonuclease T compare
EX31_RS11260 -0.6 -2.5 CidB/LrgB family autolysis modulator compare
EX31_RS01530 -0.6 -0.8 hypothetical protein compare
EX31_RS23990 -0.6 -0.9 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS23875 -0.6 -1.3 DUF1471 domain-containing protein compare
EX31_RS14320 -0.6 -1.6 envelope stress response regulator transcription factor CpxR compare
EX31_RS02790 -0.6 -1.8 low molecular weight phosphotyrosine protein phosphatase compare
EX31_RS09325 -0.6 -1.4 transporter compare
EX31_RS19795 -0.6 -0.9 hypothetical protein compare
EX31_RS25245 -0.6 -1.9 late control protein B compare
EX31_RS24270 -0.6 -2.3 hypothetical protein compare
EX31_RS10340 -0.6 -1.0 GNAT family N-acetyltransferase compare
EX31_RS01580 -0.6 -1.2 phage tail protein compare
EX31_RS15165 -0.6 -2.7 tyrosine recombinase XerC compare
EX31_RS02930 -0.6 -2.5 protein-tyrosine-phosphatase compare
EX31_RS10725 -0.6 -1.3 plasmid maintenance protein CcdB compare
EX31_RS22680 -0.6 -3.4 polyphosphate kinase 1 compare
EX31_RS25695 -0.6 -2.3 DUF1883 domain-containing protein compare
EX31_RS11540 -0.6 -1.8 dCTP deaminase compare
EX31_RS20410 -0.6 -2.0 hypothetical protein compare
EX31_RS09945 -0.6 -2.2 threonylcarbamoyl-AMP synthase compare
EX31_RS23070 -0.6 -2.0 ABC transporter substrate-binding protein compare
EX31_RS24290 -0.6 -2.3 type VI secretion system tube protein Hcp compare
EX31_RS06245 -0.6 -2.0 hypothetical protein compare
EX31_RS16980 -0.6 -1.2 ATP-dependent dethiobiotin synthetase BioD compare
EX31_RS12600 -0.6 -1.4 pilus assembly protein compare
EX31_RS10535 -0.6 -0.6 GtrA family protein compare
EX31_RS24375 -0.6 -0.9 biofilm formation regulator BssS compare
EX31_RS00430 -0.6 -2.5 PTS sucrose transporter subunit IIBC compare
EX31_RS04335 -0.6 -3.0 site-specific integrase compare
EX31_RS24265 -0.6 -2.4 secY/secA suppressor protein compare
EX31_RS22265 -0.6 -3.9 peptidylprolyl isomerase compare
EX31_RS10820 -0.6 -2.5 magnesium/cobalt transporter CorA compare
EX31_RS22245 -0.6 -1.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS06000 -0.6 -2.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS01965 -0.6 -1.7 DUF2931 family protein compare
EX31_RS14435 -0.6 -2.6 glycosyltransferase family 4 protein compare
EX31_RS20405 -0.6 -2.5 class I SAM-dependent methyltransferase compare
EX31_RS23630 -0.6 -2.2 transcriptional regulator compare
EX31_RS21900 -0.5 -2.7 phospholipid:lipid A palmitoyltransferase compare
EX31_RS11560 -0.5 -1.0 DUF1127 domain-containing protein compare
EX31_RS09700 -0.5 -2.1 GlpM family protein compare
EX31_RS09390 -0.5 -1.9 phosphate starvation-inducible protein PhoH compare
EX31_RS12945 -0.5 -3.3 VOC family protein compare
EX31_RS00245 -0.5 -1.6 HTH-type transcriptional activator RhaS compare
EX31_RS12010 -0.5 -2.9 cysteine protease compare
EX31_RS07415 -0.5 -0.6 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS01985 -0.5 -1.6 type VI secretion system lipoprotein TssJ compare
EX31_RS09280 -0.5 -2.9 ABC transporter ATP-binding protein compare
EX31_RS13980 -0.5 -1.4 lipoate--protein ligase A compare
EX31_RS00610 -0.5 -1.6 heme utilization cystosolic carrier protein HutX compare
EX31_RS01955 -0.5 -1.3 DUF2931 family protein compare
EX31_RS25640 -0.5 -2.3 DUF2767 family protein compare
EX31_RS23470 -0.5 -0.9 cyd operon protein YbgE compare
EX31_RS17610 -0.5 -2.2 antibiotic biosynthesis monooxygenase compare
EX31_RS06975 -0.5 -2.0 YdgA family protein compare
EX31_RS21345 -0.5 -1.7 fimbria/pilus periplasmic chaperone compare
EX31_RS06915 -0.5 -1.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS16395 -0.5 -3.7 MFS transporter compare
EX31_RS10040 -0.5 -1.5 YciU family protein compare
EX31_RS22145 -0.5 -1.1 phosphatidylglycerophosphatase A compare
EX31_RS17565 -0.5 -2.3 GGDEF domain-containing protein compare
EX31_RS09165 -0.5 -1.5 FadR family transcriptional regulator compare
EX31_RS02900 -0.5 -2.8 glycosyltransferase compare
EX31_RS09295 -0.5 -2.1 D-amino-acid transaminase compare
EX31_RS24670 -0.5 -1.3 peptidoglycan editing factor PgeF compare
EX31_RS01970 -0.5 -0.4 hypothetical protein compare
EX31_RS03330 -0.5 -0.9 hypoxanthine phosphoribosyltransferase compare
EX31_RS01045 -0.5 -2.2 VOC family protein compare
EX31_RS11470 -0.5 -1.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS07605 -0.5 -1.8 DUF5347 family protein compare
EX31_RS16675 -0.5 -1.6 histidine utilization repressor compare
EX31_RS09240 -0.5 -2.2 D-aminopeptidase compare
EX31_RS24730 -0.5 -1.6 YoaH family protein compare
EX31_RS23540 -0.5 -1.7 hypothetical protein compare
EX31_RS11485 -0.5 -2.1 ABC transporter ATP-binding protein compare


Specific Phenotypes

For 18 genes in this experiment