Experiment set4S168 for Rahnella sp. WP5

Compare to:

NL-CCM; high oxygen

200 most important genes:

  gene name fitness t score description  
EX31_RS11525 -3.7 -4.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS18255 -3.6 -4.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS23490 -3.4 -2.3 cell envelope integrity protein TolA compare
EX31_RS14405 -3.4 -3.2 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS03790 -3.2 -3.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS23320 -3.1 -6.7 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS14445 -3.0 -8.5 glycosyltransferase family 2 protein compare
EX31_RS08140 -2.6 -3.9 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS03250 -2.4 -11.0 RNA polymerase-binding protein DksA compare
EX31_RS14400 -2.3 -5.9 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS21020 -2.2 -2.2 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS06055 -2.1 -4.2 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS12240 -2.1 -3.1 rod shape-determining protein MreC compare
EX31_RS18525 -2.0 -4.3 DNA translocase FtsK compare
EX31_RS23485 -2.0 -2.3 colicin uptake protein TolR compare
EX31_RS02520 -2.0 -1.4 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS23495 -2.0 -7.2 Tol-Pal system protein TolB compare
EX31_RS22695 -2.0 -7.3 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11625 -2.0 -1.7 hypothetical protein compare
EX31_RS23500 -2.0 -4.0 peptidoglycan-associated lipoprotein Pal compare
EX31_RS11500 -1.9 -3.3 glycosyltransferase family 2 protein compare
EX31_RS03645 -1.9 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS11840 -1.9 -11.3 diacylglycerol kinase compare
EX31_RS13045 -1.9 -11.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS15530 -1.9 -2.5 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS21895 -1.9 -12.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS07830 -1.9 -7.0 murein hydrolase activator NlpD compare
EX31_RS11675 -1.8 -3.2 Holliday junction branch migration protein RuvA compare
EX31_RS23480 -1.7 -4.3 Tol-Pal system protein TolQ compare
EX31_RS23990 -1.7 -1.9 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS06225 -1.7 -2.0 hypothetical protein compare
EX31_RS16860 -1.7 -12.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS15870 -1.6 -2.4 glutamate--ammonia ligase compare
EX31_RS20495 -1.6 -6.5 outer membrane protein assembly factor BamB compare
EX31_RS16855 -1.5 -8.5 phosphoribosylamine--glycine ligase compare
EX31_RS24855 -1.5 -4.3 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS07340 -1.5 -1.6 stress-induced protein YchH compare
EX31_RS10535 -1.5 -1.9 GtrA family protein compare
EX31_RS05825 -1.5 -1.7 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS15085 -1.4 -3.9 lipid III flippase WzxE compare
EX31_RS14435 -1.4 -6.5 glycosyltransferase family 4 protein compare
EX31_RS04035 -1.4 -8.8 phosphoserine phosphatase compare
EX31_RS12875 -1.4 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS01970 -1.4 -1.2 hypothetical protein compare
EX31_RS25290 -1.4 -3.3 hypothetical protein compare
EX31_RS04325 -1.4 -1.2 hypothetical protein compare
EX31_RS22270 -1.4 -1.3 competence protein ComEA compare
EX31_RS12400 -1.3 -1.8 RNA polymerase factor sigma-54 compare
EX31_RS14310 -1.3 -3.9 6-phosphofructokinase compare
EX31_RS18095 -1.3 -5.2 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS15880 -1.3 -6.8 nitrogen regulation protein NR(I) compare
EX31_RS04105 -1.3 -2.4 helix-turn-helix domain-containing protein compare
EX31_RS14410 -1.3 -10.6 glycosyltransferase family 9 protein compare
EX31_RS19570 -1.2 -7.8 amidophosphoribosyltransferase compare
EX31_RS02530 -1.2 -1.2 ABC transporter ATP-binding protein compare
EX31_RS15165 -1.2 -4.5 tyrosine recombinase XerC compare
EX31_RS03710 -1.2 -1.7 glucose uptake inhibitor SgrT compare
EX31_RS16655 -1.2 -2.3 hypothetical protein compare
EX31_RS07955 -1.1 -8.7 GTP diphosphokinase compare
EX31_RS02365 -1.1 -1.5 hypothetical protein compare
EX31_RS24600 -1.1 -2.0 hypothetical protein compare
EX31_RS22430 -1.1 -1.4 hemolysin expression modulator Hha compare
EX31_RS13480 -1.1 -5.1 site-specific tyrosine recombinase XerD compare
EX31_RS15095 -1.1 -3.4 O-antigen assembly polymerase compare
EX31_RS18470 -1.1 -3.7 pyruvate formate lyase 1-activating protein compare
EX31_RS07470 -1.0 -2.4 hypothetical protein compare
EX31_RS11010 -1.0 -1.2 DgsA anti-repressor MtfA compare
EX31_RS14415 -1.0 -4.4 sugar glycosyltransferase compare
EX31_RS18045 -1.0 -2.6 macrodomain Ter protein MatP compare
EX31_RS18040 -1.0 -7.1 porin OmpA compare
EX31_RS01510 -1.0 -2.5 DinI-like family protein compare
EX31_RS05245 -1.0 -3.3 PTS sugar transporter subunit IIB compare
EX31_RS10375 -1.0 -1.4 hypothetical protein compare
EX31_RS23630 -1.0 -3.7 transcriptional regulator compare
EX31_RS14550 -1.0 -2.1 Trk system potassium transporter TrkH compare
EX31_RS13745 -1.0 -2.1 pyridoxal kinase PdxY compare
EX31_RS21470 -1.0 -5.9 phosphoglycerate dehydrogenase compare
EX31_RS01960 -1.0 -1.9 DUF2931 family protein compare
EX31_RS25410 -0.9 -1.2 transposase compare
EX31_RS20185 -0.9 -3.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS12550 -0.9 -5.7 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
EX31_RS22800 -0.9 -1.6 ArsC family reductase compare
EX31_RS18540 -0.9 -0.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS22750 -0.9 -2.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS25415 -0.9 -1.1 helix-turn-helix domain-containing protein compare
EX31_RS13870 -0.9 -1.7 pyruvate kinase PykF compare
EX31_RS09065 -0.9 -2.8 molecular chaperone compare
EX31_RS25645 -0.9 -1.2 K(+)-transporting ATPase subunit F compare
EX31_RS17710 -0.9 -3.3 hypothetical protein compare
EX31_RS14320 -0.8 -1.6 envelope stress response regulator transcription factor CpxR compare
EX31_RS22620 -0.8 -3.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS01655 -0.8 -3.0 hypothetical protein compare
EX31_RS08520 -0.8 -5.4 polyribonucleotide nucleotidyltransferase compare
EX31_RS00010 -0.8 -1.8 type II toxin-antitoxin system HipA family toxin compare
EX31_RS05040 -0.8 -2.4 helix-turn-helix domain-containing protein compare
EX31_RS15555 -0.8 -2.4 amino acid ABC transporter ATP-binding protein compare
EX31_RS14500 -0.8 -4.9 orotate phosphoribosyltransferase compare
EX31_RS18970 -0.8 -3.4 DksA/TraR family C4-type zinc finger protein compare
EX31_RS24395 -0.8 -2.8 ribonuclease E compare
EX31_RS24380 -0.8 -0.9 DNA damage-inducible protein I compare
EX31_RS08515 -0.8 -6.7 lipoprotein NlpI compare
EX31_RS10075 -0.8 -5.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
EX31_RS03310 -0.8 -2.5 hypothetical protein compare
EX31_RS01905 -0.8 -2.2 hypothetical protein compare
EX31_RS24880 -0.8 -6.5 carboxy terminal-processing peptidase compare
EX31_RS12385 -0.8 -6.0 RNase adapter RapZ compare
EX31_RS10090 -0.8 -1.9 NAD-dependent epimerase compare
EX31_RS24260 -0.7 -1.4 YceK/YidQ family lipoprotein compare
EX31_RS17985 -0.7 -2.3 acylphosphatase compare
EX31_RS19655 -0.7 -2.8 beta-ketoacyl-ACP synthase I compare
EX31_RS07200 -0.7 -3.7 FNR family transcription factor compare
EX31_RS11540 -0.7 -2.0 dCTP deaminase compare
EX31_RS12665 -0.7 -3.4 transcriptional regulator ExuR compare
EX31_RS06915 -0.7 -1.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS24385 -0.7 -2.6 dihydroorotase compare
EX31_RS02470 -0.7 -3.0 alpha/beta fold hydrolase compare
EX31_RS19700 -0.7 -2.2 phosphohistidine phosphatase SixA compare
EX31_RS09170 -0.7 -2.1 ABC transporter ATP-binding protein compare
EX31_RS22320 -0.7 -4.8 ammonium transporter AmtB compare
EX31_RS09290 -0.7 -1.6 hypothetical protein compare
EX31_RS06680 -0.7 -1.3 cellulose biosynthesis protein BcsF compare
EX31_RS06620 -0.7 -2.1 electron transport complex subunit RsxA compare
EX31_RS12600 -0.7 -2.6 pilus assembly protein compare
EX31_RS23470 -0.7 -1.5 cyd operon protein YbgE compare
EX31_RS23785 -0.7 -1.2 DUF262 domain-containing protein compare
EX31_RS07555 -0.7 -1.5 glucose 1-dehydrogenase compare
EX31_RS24145 -0.7 -4.3 UvrY/SirA/GacA family response regulator transcription factor compare
EX31_RS22680 -0.7 -3.3 polyphosphate kinase 1 compare
EX31_RS20190 -0.7 -1.1 PTS glucose transporter subunit IIA compare
EX31_RS24300 -0.7 -1.4 DUF2971 domain-containing protein compare
EX31_RS10590 -0.7 -1.3 cell division topological specificity factor MinE compare
EX31_RS15875 -0.7 -5.3 nitrogen regulation protein NR(II) compare
EX31_RS11110 -0.7 -1.4 RidA family protein compare
EX31_RS21280 -0.7 -1.5 hydroxymyristoyl-ACP dehydratase compare
EX31_RS02790 -0.7 -2.0 low molecular weight phosphotyrosine protein phosphatase compare
EX31_RS19575 -0.7 -4.6 colicin V production protein compare
EX31_RS11650 -0.7 -3.1 glucose 1-dehydrogenase compare
EX31_RS06985 -0.7 -1.7 iron export ABC transporter permease subunit FetB compare
EX31_RS22625 -0.7 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS15055 -0.7 -5.8 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
EX31_RS09580 -0.6 -0.5 flagellar motor switch protein FliN compare
EX31_RS18270 -0.6 -4.7 formate C-acetyltransferase compare
EX31_RS23895 -0.6 -2.3 TetR/AcrR family transcriptional regulator compare
EX31_RS01990 -0.6 -0.8 type VI secretion system baseplate subunit TssE compare
EX31_RS00715 -0.6 -1.6 class A beta-lactamase compare
EX31_RS10585 -0.6 -2.7 septum site-determining protein MinD compare
EX31_RS18445 -0.6 -1.6 DUF2732 domain-containing protein compare
EX31_RS00935 -0.6 -2.3 LysR family transcriptional regulator compare
EX31_RS01885 -0.6 -1.4 type IV secretion protein Rhs compare
EX31_RS25300 -0.6 -1.1 YqaE/Pmp3 family membrane protein compare
EX31_RS21575 -0.6 -2.1 hypothetical protein compare
EX31_RS09760 -0.6 -2.0 D-xylose ABC transporter substrate-binding protein compare
EX31_RS07135 -0.6 -1.0 hypothetical protein compare
EX31_RS00905 -0.6 -1.7 ester cyclase compare
EX31_RS02385 -0.6 -0.8 hypothetical protein compare
EX31_RS02495 -0.6 -3.0 cytochrome P450 compare
EX31_RS00920 -0.6 -0.9 DUF1493 family protein compare
EX31_RS09585 -0.6 -1.3 flagellar biosynthetic protein FliO compare
EX31_RS20405 -0.6 -2.3 class I SAM-dependent methyltransferase compare
EX31_RS02515 -0.6 -0.8 PAS domain-containing protein compare
EX31_RS02035 -0.6 -2.4 ABC transporter ATP-binding protein compare
EX31_RS06975 -0.6 -3.0 YdgA family protein compare
EX31_RS24140 -0.6 -0.9 DUF2594 family protein compare
EX31_RS11510 -0.6 -2.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
EX31_RS01280 -0.6 -1.5 SgcJ/EcaC family oxidoreductase compare
EX31_RS09920 -0.6 -2.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
EX31_RS11485 -0.6 -2.3 ABC transporter ATP-binding protein compare
EX31_RS19480 -0.6 -3.1 acetate kinase compare
EX31_RS10340 -0.6 -1.3 GNAT family N-acetyltransferase compare
EX31_RS01595 -0.6 -0.7 phage minor tail protein G compare
EX31_RS06340 -0.6 -1.5 thiol peroxidase compare
EX31_RS11260 -0.6 -1.9 CidB/LrgB family autolysis modulator compare
EX31_RS14770 -0.5 -2.2 hypothetical protein compare
EX31_RS00510 -0.5 -2.0 TetR/AcrR family transcriptional regulator compare
EX31_RS17835 -0.5 -1.3 PTS transporter subunit EIIB compare
EX31_RS23245 -0.5 -4.6 asparagine synthase B compare
EX31_RS25555 -0.5 -1.1 GpE family phage tail protein compare
EX31_RS07410 -0.5 -1.6 NAD(P)H-dependent oxidoreductase compare
EX31_RS17465 -0.5 -1.7 hypothetical protein compare
EX31_RS23560 -0.5 -2.1 phosphate starvation-inducible protein compare
EX31_RS07075 -0.5 -2.2 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
EX31_RS25095 -0.5 -1.0 hypothetical protein compare
EX31_RS21720 -0.5 -2.8 DUF2892 domain-containing protein compare
EX31_RS24010 -0.5 -1.2 GNAT family N-acetyltransferase compare
EX31_RS03830 -0.5 -4.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS25910 -0.5 -0.7 hypothetical protein compare
EX31_RS17265 -0.5 -1.4 hypothetical protein compare
EX31_RS15525 -0.5 -1.2 nitrogen assimilation transcriptional regulator compare
EX31_RS11815 -0.5 -3.3 glucose-6-phosphate isomerase compare
EX31_RS19070 -0.5 -2.4 1-phosphofructokinase compare
EX31_RS08825 -0.5 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS03835 -0.5 -2.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS22570 -0.5 -2.5 conjugal transfer protein TraB compare
EX31_RS02755 -0.5 -2.7 hypothetical protein compare
EX31_RS12520 -0.5 -3.8 aerobic respiration two-component sensor histidine kinase ArcB compare
EX31_RS11180 -0.5 -2.4 acyltransferase compare
EX31_RS04145 -0.5 -0.5 tRNA-Leu compare
EX31_RS06140 -0.5 -3.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS16725 -0.5 -1.0 phytanoyl-CoA dioxygenase compare
EX31_RS23375 -0.5 -2.8 type 2 GTP cyclohydrolase I compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm; high oxygen experiments