Experiment set4S167 for Rahnella sp. WP5

200 most important genes:

gene	name	fitness	t score	description
EX31_RS03790		-3.6	-4.2	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
EX31_RS11525		-3.2	-4.9	UTP--glucose-1-phosphate uridylyltransferase GalU
EX31_RS14340		-3.0	-2.0	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
EX31_RS23320		-2.9	-6.5	alpha-D-glucose phosphate-specific phosphoglucomutase
EX31_RS21020		-2.9	-3.4	D-sedoheptulose 7-phosphate isomerase
EX31_RS14405		-2.7	-2.6	lipopolysaccharide heptosyltransferase RfaC
EX31_RS14445		-2.4	-8.1	glycosyltransferase family 2 protein
EX31_RS23480		-2.3	-5.7	Tol-Pal system protein TolQ
EX31_RS15870		-2.3	-1.6	glutamate--ammonia ligase
EX31_RS10090		-2.2	-4.1	NAD-dependent epimerase
EX31_RS11840		-2.2	-13.8	diacylglycerol kinase
EX31_RS18255		-2.1	-4.0	3-phosphoserine/phosphohydroxythreonine transaminase
EX31_RS03250		-2.0	-9.2	RNA polymerase-binding protein DksA
EX31_RS23490		-1.9	-3.1	cell envelope integrity protein TolA
EX31_RS23495		-1.9	-6.7	Tol-Pal system protein TolB
EX31_RS15095		-1.9	-5.0	O-antigen assembly polymerase
EX31_RS08140		-1.9	-3.6	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
EX31_RS23500		-1.9	-4.0	peptidoglycan-associated lipoprotein Pal
EX31_RS14310		-1.8	-5.1	6-phosphofructokinase
EX31_RS22695		-1.8	-7.0	phosphoribosylformylglycinamidine cyclo-ligase
EX31_RS14400		-1.7	-5.3	ADP-heptose--LPS heptosyltransferase RfaF
EX31_RS23485		-1.7	-2.5	colicin uptake protein TolR
EX31_RS12875		-1.6	-2.6	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
EX31_RS10535		-1.6	-2.8	GtrA family protein
EX31_RS01805		-1.6	-2.2	hypothetical protein
EX31_RS19570		-1.6	-9.2	amidophosphoribosyltransferase
EX31_RS02520		-1.5	-1.5	sigma-54-dependent Fis family transcriptional regulator
EX31_RS14415		-1.5	-7.8	sugar glycosyltransferase
EX31_RS07340		-1.5	-1.7	stress-induced protein YchH
EX31_RS21895		-1.4	-10.1	phosphoribosylformylglycinamidine synthase
EX31_RS23470		-1.4	-2.6	cyd operon protein YbgE
EX31_RS15085		-1.4	-3.7	lipid III flippase WzxE
EX31_RS13045		-1.4	-8.7	bifunctional uridylyltransferase/uridylyl-removing protein GlnD
EX31_RS18450		-1.4	-1.7	hypothetical protein
EX31_RS14435		-1.4	-6.5	glycosyltransferase family 4 protein
EX31_RS16855		-1.3	-8.4	phosphoribosylamine--glycine ligase
EX31_RS00130		-1.3	-2.9	GGDEF domain-containing protein
EX31_RS16860		-1.3	-10.0	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
EX31_RS07830		-1.3	-6.2	murein hydrolase activator NlpD
EX31_RS20735		-1.3	-3.0	exodeoxyribonuclease V subunit beta
EX31_RS12400		-1.2	-1.8	RNA polymerase factor sigma-54
EX31_RS25070		-1.2	-2.0	DUF551 domain-containing protein
EX31_RS09580		-1.2	-1.5	flagellar motor switch protein FliN
EX31_RS05040		-1.2	-3.8	helix-turn-helix domain-containing protein
EX31_RS14410		-1.2	-10.1	glycosyltransferase family 9 protein
EX31_RS09080		-1.2	-1.1	LysR family transcriptional regulator
EX31_RS24325		-1.2	-2.5	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee
EX31_RS04710		-1.2	-3.5	adenine-specific DNA-methyltransferase
EX31_RS18095		-1.2	-3.8	quinone-dependent dihydroorotate dehydrogenase
EX31_RS22145		-1.1	-1.8	phosphatidylglycerophosphatase A
EX31_RS04035		-1.1	-7.9	phosphoserine phosphatase
EX31_RS04325		-1.1	-1.0	hypothetical protein
EX31_RS11540		-1.1	-2.0	dCTP deaminase
EX31_RS04320		-1.1	-2.6	hypothetical protein
EX31_RS08745		-1.1	-1.4	50S ribosomal protein L9
EX31_RS25095		-1.1	-2.9	hypothetical protein
EX31_RS09535		-1.0	-1.8	flagellar hook-basal body complex protein FliE
EX31_RS15880		-1.0	-6.4	nitrogen regulation protein NR(I)
EX31_RS22620		-1.0	-3.7	5-(carboxyamino)imidazole ribonucleotide synthase
EX31_RS18040		-1.0	-7.1	porin OmpA
EX31_RS22625		-1.0	-2.0	5-(carboxyamino)imidazole ribonucleotide mutase
EX31_RS18470		-0.9	-4.2	pyruvate formate lyase 1-activating protein
EX31_RS05825		-0.9	-1.1	mannitol-1-phosphate 5-dehydrogenase
EX31_RS11675		-0.9	-1.6	Holliday junction branch migration protein RuvA
EX31_RS25715		-0.9	-2.1	hypothetical protein
EX31_RS07955		-0.9	-7.5	GTP diphosphokinase
EX31_RS21470		-0.9	-5.9	phosphoglycerate dehydrogenase
EX31_RS24385		-0.9	-2.2	dihydroorotase
EX31_RS18540		-0.9	-0.6	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD
EX31_RS09855		-0.9	-2.3	orotidine-5'-phosphate decarboxylase
EX31_RS22320		-0.9	-5.5	ammonium transporter AmtB
EX31_RS01530		-0.9	-1.5	hypothetical protein
EX31_RS11510		-0.9	-3.3	dTDP-4-dehydrorhamnose 3,5-epimerase
EX31_RS18625		-0.9	-1.4	heavy metal-binding domain-containing protein
EX31_RS12665		-0.9	-4.6	transcriptional regulator ExuR
EX31_RS12385		-0.9	-7.1	RNase adapter RapZ
EX31_RS07465		-0.8	-2.5	LysR family transcriptional regulator
EX31_RS07115		-0.8	-2.0	cysteine dioxygenase
EX31_RS19655		-0.8	-2.9	beta-ketoacyl-ACP synthase I
EX31_RS03645		-0.8	-2.0	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
EX31_RS07130		-0.8	-2.6	ABC transporter substrate-binding protein
EX31_RS09585		-0.8	-1.6	flagellar biosynthetic protein FliO
EX31_RS09170		-0.8	-2.0	ABC transporter ATP-binding protein
EX31_RS06810		-0.8	-1.6	LysR family transcriptional regulator
EX31_RS23245		-0.8	-7.0	asparagine synthase B
EX31_RS23895		-0.8	-3.6	TetR/AcrR family transcriptional regulator
EX31_RS25555		-0.8	-1.7	GpE family phage tail protein
EX31_RS02515		-0.8	-1.4	PAS domain-containing protein
EX31_RS11480		-0.8	-4.0	ABC transporter permease
EX31_RS09670		-0.8	-1.8	bleomycin resistance protein
EX31_RS01960		-0.8	-1.9	DUF2931 family protein
EX31_RS22245		-0.8	-1.5	ATP-dependent Clp endopeptidase proteolytic subunit ClpP
EX31_RS03955		-0.8	-3.4	two-component system response regulator ArcA
EX31_RS02920		-0.8	-1.4	glycosyltransferase
EX31_RS20495		-0.8	-3.8	outer membrane protein assembly factor BamB
EX31_RS08520		-0.7	-5.2	polyribonucleotide nucleotidyltransferase
EX31_RS01970		-0.7	-0.6	hypothetical protein
EX31_RS16680		-0.7	-1.8	enoyl-CoA hydratase
EX31_RS02790		-0.7	-1.9	low molecular weight phosphotyrosine protein phosphatase
EX31_RS12785		-0.7	-4.9	aspartate carbamoyltransferase
EX31_RS12520		-0.7	-5.4	aerobic respiration two-component sensor histidine kinase ArcB
EX31_RS19485		-0.7	-3.5	phosphate acetyltransferase
EX31_RS10075		-0.7	-5.1	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
EX31_RS11485		-0.7	-3.2	ABC transporter ATP-binding protein
EX31_RS22250		-0.7	-1.9	ATP-dependent protease ATP-binding subunit ClpX
EX31_RS06635		-0.7	-2.5	L-arabinose isomerase
EX31_RS08515		-0.7	-6.1	lipoprotein NlpI
EX31_RS07525		-0.7	-2.2	sulfurtransferase
EX31_RS24395		-0.7	-2.2	ribonuclease E
EX31_RS10380		-0.7	-2.2	DUF4440 domain-containing protein
EX31_RS24145		-0.7	-2.9	UvrY/SirA/GacA family response regulator transcription factor
EX31_RS10815		-0.7	-2.1	oxidoreductase
EX31_RS05685		-0.7	-2.9	hypothetical protein
EX31_RS20935		-0.7	-1.7	hypothetical protein
EX31_RS14500		-0.7	-4.0	orotate phosphoribosyltransferase
EX31_RS11490		-0.7	-2.4	glycosyltransferase
EX31_RS02530		-0.7	-0.9	ABC transporter ATP-binding protein
EX31_RS14005		-0.7	-1.4	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase
EX31_RS24855		-0.7	-2.0	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF
EX31_RS25300		-0.7	-1.0	YqaE/Pmp3 family membrane protein
EX31_RS00010		-0.7	-1.4	type II toxin-antitoxin system HipA family toxin
EX31_RS12240		-0.7	-1.5	rod shape-determining protein MreC
EX31_RS18525		-0.7	-1.7	DNA translocase FtsK
EX31_RS07200		-0.7	-3.0	FNR family transcription factor
EX31_RS16385		-0.7	-2.5	adenosylmethionine decarboxylase
EX31_RS24260		-0.7	-1.5	YceK/YidQ family lipoprotein
EX31_RS01885		-0.7	-0.9	type IV secretion protein Rhs
EX31_RS06225		-0.7	-1.0	hypothetical protein
EX31_RS22680		-0.6	-3.2	polyphosphate kinase 1
EX31_RS10395		-0.6	-3.6	NAD(P)-binding domain-containing protein
EX31_RS20180		-0.6	-1.3	phosphocarrier protein Hpr
EX31_RS03835		-0.6	-3.1	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
EX31_RS01965		-0.6	-1.3	DUF2931 family protein
EX31_RS01255		-0.6	-1.5	Crp/Fnr family transcriptional regulator
EX31_RS06790		-0.6	-2.1	histidinol dehydrogenase
EX31_RS16685		-0.6	-1.7	3-hydroxyacyl-CoA dehydrogenase family protein
EX31_RS20890		-0.6	-0.8	hypothetical protein
EX31_RS09560		-0.6	-2.5	flagella biosynthesis chaperone FliJ
EX31_RS04295		-0.6	-1.4	hypothetical protein
EX31_RS24880		-0.6	-5.5	carboxy terminal-processing peptidase
EX31_RS10340		-0.6	-1.1	GNAT family N-acetyltransferase
EX31_RS10595		-0.6	-2.1	ribonuclease D
EX31_RS05245		-0.6	-1.9	PTS sugar transporter subunit IIB
EX31_RS18600		-0.6	-2.6	ubiquinone-dependent pyruvate dehydrogenase
EX31_RS20410		-0.6	-2.4	hypothetical protein
EX31_RS10035		-0.6	-1.1	cardiolipin synthase
EX31_RS02775		-0.6	-2.1	hypothetical protein
EX31_RS20930		-0.6	-2.0	hypothetical protein
EX31_RS02385		-0.6	-0.7	hypothetical protein
EX31_RS25290		-0.6	-1.8	hypothetical protein
EX31_RS23440		-0.6	-1.1	2-oxoglutarate dehydrogenase E1 component
EX31_RS19575		-0.6	-4.3	colicin V production protein
EX31_RS11625		-0.6	-0.5	hypothetical protein
EX31_RS04315		-0.6	-1.6	hypothetical protein
EX31_RS15165		-0.6	-3.2	tyrosine recombinase XerC
EX31_RS15055		-0.6	-5.2	UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase
EX31_RS11290		-0.6	-2.8	flagellar basal-body rod protein FlgG
EX31_RS14325		-0.6	-4.3	envelope stress sensor histidine kinase CpxA
EX31_RS10000		-0.6	-2.1	UPF0259 family protein
EX31_RS07430		-0.6	-1.5	transporter substrate-binding domain-containing protein
EX31_RS12550		-0.6	-3.7	16S rRNA (cytidine(1402)-2'-O)-methyltransferase
EX31_RS00490		-0.6	-2.1	paraquat-inducible protein A
EX31_RS06140		-0.6	-3.7	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
EX31_RS04105		-0.6	-0.7	helix-turn-helix domain-containing protein
EX31_RS09545		-0.6	-2.3	flagellar motor switch protein FliG
EX31_RS17285		-0.6	-1.9	carboxy-S-adenosyl-L-methionine synthase CmoA
EX31_RS07785		-0.6	-0.9	carbon storage regulator CsrA
EX31_RS03830		-0.6	-4.4	carbamoyl-phosphate synthase large subunit
EX31_RS00715		-0.5	-1.9	class A beta-lactamase
EX31_RS01615		-0.5	-1.5	DNA breaking-rejoining protein
EX31_RS06620		-0.5	-2.2	electron transport complex subunit RsxA
EX31_RS15875		-0.5	-4.0	nitrogen regulation protein NR(II)
EX31_RS17100		-0.5	-1.0	colicin immunity protein Cui
EX31_RS19790		-0.5	-2.3	DUF4225 domain-containing protein
EX31_RS26065		-0.5	-1.5	IS630 family transposase
EX31_RS12600		-0.5	-1.7	pilus assembly protein
EX31_RS25720		-0.5	-1.8	hypothetical protein
EX31_RS24290		-0.5	-2.0	type VI secretion system tube protein Hcp
EX31_RS02200		-0.5	-2.3	Hcp family type VI secretion system effector
EX31_RS09605		-0.5	-2.1	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
EX31_RS15975		-0.5	-1.3	peptide deformylase
EX31_RS16675		-0.5	-1.6	histidine utilization repressor
EX31_RS22750		-0.5	-1.5	phosphoribosylaminoimidazolesuccinocarboxamide synthase
EX31_RS07475		-0.5	-0.7	hypothetical protein
EX31_RS02545		-0.5	-2.4	alpha/beta hydrolase
EX31_RS15595		-0.5	-1.9	MetQ/NlpA family lipoprotein
EX31_RS07290		-0.5	-1.9	C4-dicarboxylic acid transporter DauA
EX31_RS03075		-0.5	-3.1	LysR family transcriptional regulator
EX31_RS17610		-0.5	-2.2	antibiotic biosynthesis monooxygenase
EX31_RS12345		-0.5	-2.3	DUF4312 family protein
EX31_RS09205		-0.5	-1.2	siderophore-iron reductase FhuF
EX31_RS03695		-0.5	-2.2	3-isopropylmalate dehydratase small subunit
EX31_RS05730		-0.5	-1.6	isochorismatase family protein
EX31_RS13480		-0.5	-2.4	site-specific tyrosine recombinase XerD
EX31_RS02205		-0.5	-2.6	DUF2778 domain-containing protein
EX31_RS11180		-0.5	-2.6	acyltransferase
EX31_RS00085		-0.5	-3.1	ABC transporter ATP-binding protein
EX31_RS02000		-0.5	-2.8	hypothetical protein
EX31_RS14320		-0.5	-1.0	envelope stress response regulator transcription factor CpxR
EX31_RS22265		-0.5	-3.5	peptidylprolyl isomerase

Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm; high oxygen experiments