Experiment set4S165 for Rahnella sp. WP5

200 most important genes:

gene	name	fitness	t score	description
EX31_RS14405		-3.4	-3.3	lipopolysaccharide heptosyltransferase RfaC
EX31_RS21020		-3.1	-3.2	D-sedoheptulose 7-phosphate isomerase
EX31_RS03790		-2.8	-3.8	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
EX31_RS15085		-2.7	-5.5	lipid III flippase WzxE
EX31_RS23490		-2.7	-3.1	cell envelope integrity protein TolA
EX31_RS23485		-2.6	-3.5	colicin uptake protein TolR
EX31_RS03250		-2.2	-9.8	RNA polymerase-binding protein DksA
EX31_RS11840		-2.1	-11.6	diacylglycerol kinase
EX31_RS07475		-2.0	-2.4	hypothetical protein
EX31_RS23320		-2.0	-4.2	alpha-D-glucose phosphate-specific phosphoglucomutase
EX31_RS23480		-2.0	-5.0	Tol-Pal system protein TolQ
EX31_RS18255		-1.9	-4.6	3-phosphoserine/phosphohydroxythreonine transaminase
EX31_RS14400		-1.9	-4.7	ADP-heptose--LPS heptosyltransferase RfaF
EX31_RS08140		-1.9	-4.1	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
EX31_RS05825		-1.8	-1.7	mannitol-1-phosphate 5-dehydrogenase
EX31_RS22245		-1.7	-2.0	ATP-dependent Clp endopeptidase proteolytic subunit ClpP
EX31_RS15870		-1.7	-2.5	glutamate--ammonia ligase
EX31_RS21895		-1.6	-11.7	phosphoribosylformylglycinamidine synthase
EX31_RS23500		-1.6	-3.6	peptidoglycan-associated lipoprotein Pal
EX31_RS13045		-1.6	-9.7	bifunctional uridylyltransferase/uridylyl-removing protein GlnD
EX31_RS07470		-1.6	-3.3	hypothetical protein
EX31_RS02530		-1.6	-1.8	ABC transporter ATP-binding protein
EX31_RS18525		-1.6	-3.4	DNA translocase FtsK
EX31_RS22750		-1.5	-4.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase
EX31_RS02520		-1.5	-1.5	sigma-54-dependent Fis family transcriptional regulator
EX31_RS14445		-1.5	-5.8	glycosyltransferase family 2 protein
EX31_RS11510		-1.5	-6.0	dTDP-4-dehydrorhamnose 3,5-epimerase
EX31_RS15095		-1.5	-2.1	O-antigen assembly polymerase
EX31_RS22625		-1.4	-2.5	5-(carboxyamino)imidazole ribonucleotide mutase
EX31_RS10535		-1.4	-2.6	GtrA family protein
EX31_RS07785		-1.4	-2.0	carbon storage regulator CsrA
EX31_RS22695		-1.4	-5.5	phosphoribosylformylglycinamidine cyclo-ligase
EX31_RS07135		-1.4	-2.1	hypothetical protein
EX31_RS16860		-1.4	-10.6	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
EX31_RS20495		-1.3	-5.9	outer membrane protein assembly factor BamB
EX31_RS11525		-1.3	-2.8	UTP--glucose-1-phosphate uridylyltransferase GalU
EX31_RS20450		-1.3	-5.4	IMP dehydrogenase
EX31_RS14435		-1.3	-5.5	glycosyltransferase family 4 protein
EX31_RS18470		-1.3	-5.4	pyruvate formate lyase 1-activating protein
EX31_RS01965		-1.3	-4.1	DUF2931 family protein
EX31_RS23495		-1.2	-4.9	Tol-Pal system protein TolB
EX31_RS15880		-1.2	-6.3	nitrogen regulation protein NR(I)
EX31_RS22250		-1.2	-2.6	ATP-dependent protease ATP-binding subunit ClpX
EX31_RS07830		-1.2	-5.6	murein hydrolase activator NlpD
EX31_RS19570		-1.2	-6.9	amidophosphoribosyltransferase
EX31_RS04035		-1.2	-8.2	phosphoserine phosphatase
EX31_RS12400		-1.2	-1.9	RNA polymerase factor sigma-54
EX31_RS11490		-1.2	-4.3	glycosyltransferase
EX31_RS07955		-1.2	-9.3	GTP diphosphokinase
EX31_RS14335		-1.2	-2.6	serine O-acetyltransferase
EX31_RS22620		-1.1	-5.5	5-(carboxyamino)imidazole ribonucleotide synthase
EX31_RS25295		-1.1	-2.5	GhoT/OrtT family toxin
EX31_RS14410		-1.1	-10.0	glycosyltransferase family 9 protein
EX31_RS16855		-1.1	-6.7	phosphoribosylamine--glycine ligase
EX31_RS11110		-1.1	-1.1	RidA family protein
EX31_RS14310		-1.1	-3.0	6-phosphofructokinase
EX31_RS12875		-1.1	-2.3	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
EX31_RS14320		-1.1	-2.3	envelope stress response regulator transcription factor CpxR
EX31_RS01920		-1.1	-2.9	hypothetical protein
EX31_RS03645		-1.1	-1.3	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
EX31_RS00380		-1.1	-2.7	ABC transporter ATP-binding protein
EX31_RS25410		-1.1	-1.3	transposase
EX31_RS07200		-1.1	-4.7	FNR family transcription factor
EX31_RS25595		-1.0	-1.7	hypothetical protein
EX31_RS20185		-1.0	-3.9	phosphoenolpyruvate-protein phosphotransferase PtsI
EX31_RS18095		-1.0	-3.8	quinone-dependent dihydroorotate dehydrogenase
EX31_RS24600		-1.0	-1.5	hypothetical protein
EX31_RS18625		-1.0	-2.4	heavy metal-binding domain-containing protein
EX31_RS02515		-1.0	-1.4	PAS domain-containing protein
EX31_RS10190		-1.0	-2.8	glycosyltransferase
EX31_RS18040		-0.9	-7.2	porin OmpA
EX31_RS12520		-0.9	-6.7	aerobic respiration two-component sensor histidine kinase ArcB
EX31_RS11010		-0.9	-1.3	DgsA anti-repressor MtfA
EX31_RS14500		-0.9	-5.9	orotate phosphoribosyltransferase
EX31_RS09580		-0.9	-1.6	flagellar motor switch protein FliN
EX31_RS07535		-0.9	-1.5	cytochrome b/b6 domain-containing protein
EX31_RS21470		-0.9	-5.3	phosphoglycerate dehydrogenase
EX31_RS22320		-0.9	-5.6	ammonium transporter AmtB
EX31_RS03835		-0.9	-4.4	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
EX31_RS11485		-0.9	-3.0	ABC transporter ATP-binding protein
EX31_RS14415		-0.9	-4.5	sugar glycosyltransferase
EX31_RS01580		-0.8	-2.5	phage tail protein
EX31_RS00920		-0.8	-1.7	DUF1493 family protein
EX31_RS04710		-0.8	-2.7	adenine-specific DNA-methyltransferase
EX31_RS12665		-0.8	-3.9	transcriptional regulator ExuR
EX31_RS09545		-0.8	-2.0	flagellar motor switch protein FliG
EX31_RS23785		-0.8	-2.0	DUF262 domain-containing protein
EX31_RS11540		-0.8	-2.8	dCTP deaminase
EX31_RS07525		-0.8	-1.8	sulfurtransferase
EX31_RS25105		-0.8	-1.3	DUF2474 domain-containing protein
EX31_RS02380		-0.8	-1.8	OsmC family protein
EX31_RS19655		-0.8	-2.9	beta-ketoacyl-ACP synthase I
EX31_RS02270		-0.8	-3.0	transcriptional regulator ChbR
EX31_RS13480		-0.8	-3.2	site-specific tyrosine recombinase XerD
EX31_RS16680		-0.8	-1.0	enoyl-CoA hydratase
EX31_RS06970		-0.8	-2.9	mannose-6-phosphate isomerase
EX31_RS10090		-0.8	-1.8	NAD-dependent epimerase
EX31_RS02625		-0.8	-1.8	hypothetical protein
EX31_RS00540		-0.8	-1.6	pentapeptide MXKDX repeat protein
EX31_RS19480		-0.8	-4.4	acetate kinase
EX31_RS24365		-0.8	-2.9	response regulator transcription factor
EX31_RS24380		-0.8	-2.1	DNA damage-inducible protein I
EX31_RS16710		-0.8	-2.7	ABC transporter permease subunit
EX31_RS10075		-0.8	-5.8	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
EX31_RS23895		-0.8	-3.3	TetR/AcrR family transcriptional regulator
EX31_RS10930		-0.8	-1.5	protein DsrB
EX31_RS14730		-0.8	-0.8	DUF2756 domain-containing protein
EX31_RS01970		-0.7	-0.6	hypothetical protein
EX31_RS06940		-0.7	-2.9	HD domain-containing protein
EX31_RS15265		-0.7	-2.5	hypothetical protein
EX31_RS08515		-0.7	-6.6	lipoprotein NlpI
EX31_RS03710		-0.7	-1.2	glucose uptake inhibitor SgrT
EX31_RS14095		-0.7	-2.3	yfeABCD regulator yfeE
EX31_RS03830		-0.7	-5.8	carbamoyl-phosphate synthase large subunit
EX31_RS08520		-0.7	-5.1	polyribonucleotide nucleotidyltransferase
EX31_RS02355		-0.7	-2.1	tellurite resistance methyltransferase TehB
EX31_RS09165		-0.7	-2.0	FadR family transcriptional regulator
EX31_RS14550		-0.7	-1.5	Trk system potassium transporter TrkH
EX31_RS25290		-0.7	-1.3	hypothetical protein
EX31_RS11115		-0.7	-2.4	creatininase family protein
EX31_RS12550		-0.7	-4.6	16S rRNA (cytidine(1402)-2'-O)-methyltransferase
EX31_RS01885		-0.7	-1.0	type IV secretion protein Rhs
EX31_RS05040		-0.7	-2.3	helix-turn-helix domain-containing protein
EX31_RS20895		-0.7	-2.4	hypothetical protein
EX31_RS02780		-0.7	-2.7	oligosaccharide flippase family protein
EX31_RS03220		-0.7	-1.1	Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC
EX31_RS24145		-0.7	-3.4	UvrY/SirA/GacA family response regulator transcription factor
EX31_RS15875		-0.7	-5.1	nitrogen regulation protein NR(II)
EX31_RS20610		-0.7	-3.0	nitrogen regulatory protein P-II
EX31_RS15560		-0.7	-3.2	hypothetical protein
EX31_RS17710		-0.7	-1.8	hypothetical protein
EX31_RS10595		-0.7	-2.3	ribonuclease D
EX31_RS01800		-0.7	-2.9	porin
EX31_RS24385		-0.7	-1.7	dihydroorotase
EX31_RS18550		-0.7	-2.5	leucyl/phenylalanyl-tRNA--protein transferase
EX31_RS12385		-0.7	-5.3	RNase adapter RapZ
EX31_RS18935		-0.7	-2.9	sugar phosphotransferase
EX31_RS09075		-0.6	-1.3	type 1 fimbrial protein
EX31_RS20410		-0.6	-2.7	hypothetical protein
EX31_RS04105		-0.6	-1.1	helix-turn-helix domain-containing protein
EX31_RS21280		-0.6	-1.3	hydroxymyristoyl-ACP dehydratase
EX31_RS24670		-0.6	-2.3	peptidoglycan editing factor PgeF
EX31_RS26005		-0.6	-2.2	transposase
EX31_RS23245		-0.6	-5.5	asparagine synthase B
EX31_RS04810		-0.6	-3.5	molecular chaperone
EX31_RS12585		-0.6	-3.4	hypothetical protein
EX31_RS02790		-0.6	-2.2	low molecular weight phosphotyrosine protein phosphatase
EX31_RS21345		-0.6	-2.1	fimbria/pilus periplasmic chaperone
EX31_RS18305		-0.6	-1.5	tail fiber assembly protein
EX31_RS25215		-0.6	-1.7	polysulfide reductase NrfD
EX31_RS07090		-0.6	-2.3	YnfA family protein
EX31_RS01655		-0.6	-1.6	hypothetical protein
EX31_RS09065		-0.6	-1.6	molecular chaperone
EX31_RS06225		-0.6	-0.9	hypothetical protein
EX31_RS17835		-0.6	-1.3	PTS transporter subunit EIIB
EX31_RS13815		-0.6	-0.6	ribonuclease T
EX31_RS07540		-0.6	-2.3	helix-turn-helix transcriptional regulator
EX31_RS24880		-0.6	-5.0	carboxy terminal-processing peptidase
EX31_RS04325		-0.6	-0.6	hypothetical protein
EX31_RS09225		-0.6	-1.7	iron-containing alcohol dehydrogenase family protein
EX31_RS25990		-0.6	-2.0	hypothetical protein
EX31_RS18150		-0.6	-1.9	MBL fold metallo-hydrolase
EX31_RS02360		-0.6	-1.2	CsbD family protein
EX31_RS06800		-0.6	-1.6	ABC transporter permease
EX31_RS12600		-0.6	-2.1	pilus assembly protein
EX31_RS22680		-0.6	-3.5	polyphosphate kinase 1
EX31_RS09490		-0.6	-0.7	hypothetical protein
EX31_RS01695		-0.6	-1.4	RusA family crossover junction endodeoxyribonuclease
EX31_RS10920		-0.6	-1.6	transcriptional regulator RcsA
EX31_RS09585		-0.6	-0.9	flagellar biosynthetic protein FliO
EX31_RS00935		-0.6	-2.2	LysR family transcriptional regulator
EX31_RS15165		-0.6	-2.8	tyrosine recombinase XerC
EX31_RS12785		-0.6	-3.7	aspartate carbamoyltransferase
EX31_RS06485		-0.6	-1.0	YdbL family protein
EX31_RS15055		-0.6	-4.9	UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase
EX31_RS06915		-0.6	-1.3	type I glyceraldehyde-3-phosphate dehydrogenase
EX31_RS13870		-0.6	-1.0	pyruvate kinase PykF
EX31_RS09350		-0.6	-1.5	ATP-binding cassette domain-containing protein
EX31_RS01400		-0.5	-2.5	dihydrodipicolinate synthase family protein
EX31_RS25260		-0.5	-2.1	transcriptional regulator
EX31_RS24650		-0.5	-2.1	DUF4060 family protein
EX31_RS09465		-0.5	-2.1	flagellar export chaperone FliS
EX31_RS22265		-0.5	-4.0	peptidylprolyl isomerase
EX31_RS07440		-0.5	-1.6	urea carboxylase-associated family protein
EX31_RS01960		-0.5	-1.2	DUF2931 family protein
EX31_RS06340		-0.5	-0.9	thiol peroxidase
EX31_RS10580		-0.5	-1.7	septum site-determining protein MinC
EX31_RS07180		-0.5	-2.0	DNA endonuclease SmrA
EX31_RS18695		-0.5	-2.5	DUF418 family protein
EX31_RS01905		-0.5	-1.1	hypothetical protein
EX31_RS20180		-0.5	-1.0	phosphocarrier protein Hpr
EX31_RS02490		-0.5	-2.2	3-oxoacyl-ACP synthase
EX31_RS14325		-0.5	-3.7	envelope stress sensor histidine kinase CpxA
EX31_RS13980		-0.5	-1.1	lipoate--protein ligase A
EX31_RS20870		-0.5	-2.4	colicin
EX31_RS01820		-0.5	-2.4	helix-turn-helix domain-containing protein
EX31_RS23315		-0.5	-2.5	replication initiation negative regulator SeqA
EX31_RS06460		-0.5	-2.4	carbohydrate ABC transporter permease
EX31_RS04295		-0.5	-1.4	hypothetical protein
EX31_RS10000		-0.5	-2.1	UPF0259 family protein

Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm; high oxygen experiments