Experiment set4S165 for Rahnella sp. WP5

Compare to:

NL-CCM; high oxygen

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS11845 +1.2 2.1 repressor LexA compare
EX31_RS09895 +1.2 4.0 type I DNA topoisomerase compare
EX31_RS19415 +1.1 4.8 NADH-quinone oxidoreductase subunit NuoF compare
EX31_RS25365 +1.1 2.3 50S ribosomal protein L31 compare
EX31_RS19395 +1.1 2.9 NADH-quinone oxidoreductase subunit J compare
EX31_RS23755 +1.0 4.7 molybdopterin synthase sulfur carrier subunit compare
EX31_RS19430 +1.0 4.8 NADH-quinone oxidoreductase subunit B compare
EX31_RS08130 +1.0 1.8 accessory factor UbiK family protein compare
EX31_RS19385 +1.0 3.4 NADH-quinone oxidoreductase subunit L compare
EX31_RS21320 +1.0 4.6 5S ribosomal RNA compare
EX31_RS09340 +0.9 5.7 HigA family addiction module antidote protein compare
EX31_RS01390 +0.9 1.5 hypothetical protein compare
EX31_RS09775 +0.9 2.6 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS20090 +0.9 4.9 tRNA-Ala compare
EX31_RS19420 +0.9 2.9 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS13770 +0.9 4.3 glycine zipper 2TM domain-containing protein compare
EX31_RS01435 +0.9 6.9 TetR/AcrR family transcriptional regulator compare
EX31_RS24065 +0.9 2.0 pyrimidine utilization flavin reductase protein F compare
EX31_RS05595 +0.9 5.4 MarR family transcriptional regulator compare
EX31_RS15120 +0.8 3.7 tRNA-Leu compare
EX31_RS19425 +0.8 4.5 NADH-quinone oxidoreductase subunit C/D compare
EX31_RS19410 +0.8 5.1 NADH-quinone oxidoreductase subunit NuoG compare
EX31_RS19380 +0.8 4.1 NADH-quinone oxidoreductase subunit M compare
EX31_RS23325 +0.8 6.2 PadR family transcriptional regulator compare
EX31_RS25910 +0.8 1.5 hypothetical protein compare
EX31_RS20105 +0.8 3.3 tRNA-Val compare
EX31_RS13875 +0.8 5.2 major outer membrane lipoprotein compare
EX31_RS22430 +0.8 0.8 hemolysin expression modulator Hha compare
EX31_RS16325 +0.8 2.9 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
EX31_RS00630 +0.8 2.2 iron dicitrate ABC transporter ATP-binding protein compare
EX31_RS23760 +0.8 3.3 molybdopterin synthase catalytic subunit MoaE compare
EX31_RS12335 +0.8 4.7 PRD domain-containing protein compare
EX31_RS20190 +0.7 1.0 PTS glucose transporter subunit IIA compare
EX31_RS19400 +0.7 2.4 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS10180 +0.7 1.8 type II 3-dehydroquinate dehydratase compare
EX31_RS14620 +0.7 1.5 SCP2 domain-containing protein compare
EX31_RS20550 +0.7 5.2 Fe-S cluster assembly transcriptional regulator IscR compare
EX31_RS06525 +0.7 5.4 hypothetical protein compare
EX31_RS04135 +0.7 3.3 tRNA-Leu compare
EX31_RS15805 +0.7 2.6 DNA-directed RNA polymerase subunit omega compare
EX31_RS24115 +0.7 2.2 tRNA-Lys compare
EX31_RS26075 +0.7 1.6 hypothetical protein compare
EX31_RS14345 +0.7 2.5 protein-export chaperone SecB compare
EX31_RS09500 +0.7 2.8 hypothetical protein compare
EX31_RS18890 +0.7 5.7 outer membrane protein OmpX compare
EX31_RS00700 +0.7 2.2 ABC transporter permease compare
EX31_RS03900 +0.7 3.1 molecular chaperone DnaK compare
EX31_RS17640 +0.7 1.5 TetR/AcrR family transcriptional regulator compare
EX31_RS10020 +0.7 1.9 YciI family protein compare
EX31_RS06405 +0.7 1.9 SDR family oxidoreductase compare
EX31_RS24665 +0.7 3.9 transcription antiterminator/RNA stability regulator CspE compare
EX31_RS01805 +0.7 1.6 hypothetical protein compare
EX31_RS16845 +0.7 2.8 DNA-binding protein HU-alpha compare
EX31_RS12340 +0.7 3.1 hypothetical protein compare
EX31_RS06550 +0.7 2.2 two-component system response regulator NarL compare
EX31_RS25915 +0.6 3.5 leu operon leader peptide compare
EX31_RS03915 +0.6 5.1 molybdopterin adenylyltransferase compare
EX31_RS22050 +0.6 4.0 helix-turn-helix domain-containing protein compare
EX31_RS16685 +0.6 2.2 3-hydroxyacyl-CoA dehydrogenase family protein compare
EX31_RS09425 +0.6 1.3 L-cystine ABC transporter ATP-binding protein YecC compare
EX31_RS13335 +0.6 0.5 transcriptional regulator compare
EX31_RS05290 +0.6 3.0 TetR/AcrR family transcriptional regulator compare
EX31_RS22205 +0.6 4.3 cytochrome o ubiquinol oxidase subunit IV compare
EX31_RS04725 +0.6 2.5 shikimate kinase AroK compare
EX31_RS13275 +0.6 4.8 diaminopimelate decarboxylase compare
EX31_RS01815 +0.6 1.9 (S)-acetoin forming diacetyl reductase compare
EX31_RS05855 +0.6 2.1 glycine--tRNA ligase subunit beta compare
EX31_RS24480 +0.6 2.0 purine nucleoside phosphoramidase compare
EX31_RS18770 +0.6 3.0 molybdopterin-synthase adenylyltransferase MoeB compare
EX31_RS22210 +0.6 4.5 cytochrome o ubiquinol oxidase subunit III compare
EX31_RS17380 +0.6 2.5 tRNA-Ser compare
EX31_RS25630 +0.6 2.8 DUF3606 domain-containing protein compare
EX31_RS09790 +0.6 2.6 autoinducer 2 ABC transporter permease LsrD compare
EX31_RS23750 +0.6 4.0 cyclic pyranopterin monophosphate synthase MoaC compare
EX31_RS12175 +0.6 2.5 DNA-binding transcriptional regulator Fis compare
EX31_RS05485 +0.6 4.7 endoglucanase compare
EX31_RS00565 +0.6 2.0 UbiD family decarboxylase compare
EX31_RS17385 +0.6 3.2 tRNA-Ser compare
EX31_RS09285 +0.6 1.6 hypothetical protein compare
EX31_RS05785 +0.5 1.8 superoxide dismutase [Mn] compare
EX31_RS00625 +0.5 1.1 YgdI/YgdR family lipoprotein compare
EX31_RS06585 +0.5 1.5 DUF2501 domain-containing protein compare
EX31_RS18765 +0.5 3.4 molybdopterin molybdotransferase MoeA compare
EX31_RS06285 +0.5 2.3 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS10335 +0.5 4.0 D-galactonate utilization transcriptional regulator DgoR compare
EX31_RS13645 +0.5 3.7 transcriptional repressor MprA compare
EX31_RS03210 +0.5 2.4 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
EX31_RS05730 +0.5 1.3 isochorismatase family protein compare
EX31_RS04145 +0.5 2.9 tRNA-Leu compare
EX31_RS25005 +0.5 1.6 hypothetical protein compare
EX31_RS01310 +0.5 2.2 DUF2493 domain-containing protein compare
EX31_RS01760 +0.5 3.5 hypothetical protein compare
EX31_RS07630 +0.5 2.1 hypothetical protein compare
EX31_RS08745 +0.5 0.9 50S ribosomal protein L9 compare
EX31_RS07595 +0.5 3.5 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS10490 +0.5 1.1 putative selenium delivery protein YdfZ compare
EX31_RS01130 +0.5 2.5 TetR/AcrR family transcriptional regulator compare
EX31_RS15405 +0.5 1.7 nitrogen fixation protein NifQ compare
EX31_RS09650 +0.5 1.6 GrxA family glutaredoxin compare
EX31_RS10935 +0.5 4.0 transcription antiterminator/RNA stability regulator CspE compare
EX31_RS19120 +0.5 3.7 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
EX31_RS23435 +0.5 2.7 succinate dehydrogenase iron-sulfur subunit compare
EX31_RS12440 +0.5 2.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
EX31_RS09080 +0.5 1.0 LysR family transcriptional regulator compare
EX31_RS18570 +0.5 0.8 cold shock-like protein CspD compare
EX31_RS11395 +0.5 2.6 transcriptional regulator FtrA compare
EX31_RS16735 +0.5 1.9 pirin family protein compare
EX31_RS17010 +0.5 2.3 sugar ABC transporter permease compare
EX31_RS01545 +0.5 0.6 hypothetical protein compare
EX31_RS16745 +0.5 4.2 elongation factor Tu compare
EX31_RS24410 +0.5 3.4 23S rRNA accumulation protein YceD compare
EX31_RS02100 +0.5 2.3 amidohydrolase family protein compare
EX31_RS20210 +0.5 2.3 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS09270 +0.5 1.6 DUF1611 domain-containing protein compare
EX31_RS16330 +0.5 2.7 endoribonuclease MazF compare
EX31_RS18380 +0.5 3.7 terminase compare
EX31_RS19390 +0.5 2.3 NADH-quinone oxidoreductase subunit NuoK compare
EX31_RS02335 +0.5 2.8 hypothetical protein compare
EX31_RS20925 +0.5 0.9 hypothetical protein compare
EX31_RS06235 +0.5 1.4 hypothetical protein compare
EX31_RS10770 +0.5 2.8 HlyD family secretion protein compare
EX31_RS11605 +0.5 2.6 helix-turn-helix transcriptional regulator compare
EX31_RS16660 +0.5 3.2 TetR/AcrR family transcriptional regulator compare
EX31_RS01780 +0.5 1.3 hypothetical protein compare
EX31_RS07570 +0.5 4.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
EX31_RS22200 +0.5 4.0 protoheme IX farnesyltransferase compare
EX31_RS25125 +0.5 2.3 thr operon leader peptide compare
EX31_RS12180 +0.5 4.2 tRNA dihydrouridine synthase DusB compare
EX31_RS03480 +0.5 2.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS15690 +0.5 2.3 phage shock protein operon transcriptional activator compare
EX31_RS01445 +0.5 1.2 J domain-containing protein compare
EX31_RS25660 +0.5 1.6 multidrug efflux pump-associated protein, AcrZ family compare
EX31_RS10135 +0.5 1.6 ROK family transcriptional regulator compare
EX31_RS11355 +0.5 2.0 chemotaxis protein CheY compare
EX31_RS11910 +0.5 2.5 aspartate/tyrosine/aromatic aminotransferase compare
EX31_RS11240 +0.5 1.6 GNAT family N-acetyltransferase compare
EX31_RS02015 +0.5 3.3 TetR family transcriptional regulator compare
EX31_RS16285 +0.5 1.6 conjugal transfer protein compare
EX31_RS20220 +0.5 2.2 sulfate/thiosulfate ABC transporter permease CysT compare
EX31_RS14575 +0.5 2.8 NAD(P)H-flavin reductase compare
EX31_RS01325 +0.5 1.6 hypothetical protein compare
EX31_RS21725 +0.5 3.5 helix-turn-helix transcriptional regulator compare
EX31_RS23130 +0.5 1.6 ribosome silencing factor compare
EX31_RS20535 +0.5 2.0 enhanced serine sensitivity protein SseB compare
EX31_RS25645 +0.5 1.1 K(+)-transporting ATPase subunit F compare
EX31_RS22440 +0.4 1.9 hypothetical protein compare
EX31_RS14350 +0.4 2.7 glutaredoxin 3 compare
EX31_RS22215 +0.4 4.0 cytochrome o ubiquinol oxidase subunit I compare
EX31_RS15540 +0.4 1.0 SDR family oxidoreductase compare
EX31_RS05780 +0.4 4.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
EX31_RS11200 +0.4 1.9 alpha/beta fold hydrolase compare
EX31_RS02180 +0.4 0.6 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS24945 +0.4 1.8 5S ribosomal RNA compare
EX31_RS22435 +0.4 2.7 Hha toxicity modulator TomB compare
EX31_RS14610 +0.4 1.8 twin-arginine translocase subunit TatE compare
EX31_RS14040 +0.4 0.9 DUF2502 domain-containing protein compare
EX31_RS22610 +0.4 2.4 ABC transporter ATP-binding protein compare
EX31_RS09210 +0.4 1.5 hypothetical protein compare
EX31_RS12395 +0.4 3.6 ribosome hibernation promoting factor compare
EX31_RS07100 +0.4 2.0 DUF1161 domain-containing protein compare
EX31_RS18690 +0.4 2.4 HTH-type transcriptional regulator GalS compare
EX31_RS10270 +0.4 2.1 alpha-glucosidase compare
EX31_RS01615 +0.4 1.5 DNA breaking-rejoining protein compare
EX31_RS19375 +0.4 2.0 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS16350 +0.4 3.6 DsbA family protein compare
EX31_RS02565 +0.4 1.2 3-oxoacyl-ACP synthase compare
EX31_RS18710 +0.4 3.1 LysR family transcriptional regulator compare
EX31_RS18535 +0.4 1.9 thioredoxin-disulfide reductase compare
EX31_RS07130 +0.4 1.3 ABC transporter substrate-binding protein compare
EX31_RS07590 +0.4 1.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS09035 +0.4 3.1 fimbrial protein compare
EX31_RS08530 +0.4 3.6 tRNA pseudouridine(55) synthase TruB compare
EX31_RS12460 +0.4 2.4 BolA family transcriptional regulator compare
EX31_RS20865 +0.4 1.4 bacteriocin immunity protein compare
EX31_RS18975 +0.4 3.3 glutamine ABC transporter substrate-binding protein GlnH compare
EX31_RS23260 +0.4 2.9 N-acetylglucosamine-6-phosphate deacetylase compare
EX31_RS06755 +0.4 1.2 histidine ammonia-lyase compare
EX31_RS09990 +0.4 2.1 outer membrane protein OmpW compare
EX31_RS01500 +0.4 1.4 transcriptional regulator compare
EX31_RS10700 +0.4 0.9 hypothetical protein compare
EX31_RS23430 +0.4 3.1 succinate dehydrogenase flavoprotein subunit compare
EX31_RS12240 +0.4 1.2 rod shape-determining protein MreC compare
EX31_RS10635 +0.4 3.0 MurR/RpiR family transcriptional regulator compare
EX31_RS26000 +0.4 1.1 GntR family transcriptional regulator compare
EX31_RS24325 +0.4 0.9 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS22810 +0.4 1.4 helix-turn-helix domain-containing protein compare
EX31_RS07290 +0.4 1.9 C4-dicarboxylic acid transporter DauA compare
EX31_RS19320 +0.4 1.9 nicotinamide mononucleotide deamidase-related protein YfaY compare
EX31_RS09410 +0.4 2.1 iron permease compare
EX31_RS06060 +0.4 1.6 phosphate ABC transporter permease PstA compare
EX31_RS16655 +0.4 0.7 hypothetical protein compare
EX31_RS02020 +0.4 1.4 MFS transporter compare
EX31_RS20980 +0.4 2.1 glutamate 5-kinase compare
EX31_RS18140 +0.4 3.5 porin OmpC compare
EX31_RS02375 +0.4 3.1 type II toxin-antitoxin system RelE/ParE family toxin compare
EX31_RS12030 +0.4 1.4 hypothetical protein compare
EX31_RS00530 +0.4 2.6 ParD-like family protein compare
EX31_RS16260 +0.4 2.9 type II toxin-antitoxin system MqsA family antitoxin compare
EX31_RS20070 +0.4 2.0 DUF2502 domain-containing protein compare
EX31_RS09695 +0.4 2.1 D-alanyl-D-alanine carboxypeptidase compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm; high oxygen experiments