Experiment set4S159 for Rahnella sp. WP5

Compare to:

NL-CCM; low oxygen

200 most important genes:

  gene name fitness t score description  
EX31_RS21020 -3.8 -3.6 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS14405 -3.5 -3.3 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS23490 -3.1 -3.0 cell envelope integrity protein TolA compare
EX31_RS11525 -3.1 -5.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS15095 -3.0 -4.6 O-antigen assembly polymerase compare
EX31_RS14400 -2.8 -6.4 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS08140 -2.3 -4.1 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS18255 -2.3 -4.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS25415 -2.3 -2.0 helix-turn-helix domain-containing protein compare
EX31_RS15085 -2.2 -5.9 lipid III flippase WzxE compare
EX31_RS11840 -2.2 -11.4 diacylglycerol kinase compare
EX31_RS03250 -2.1 -10.4 RNA polymerase-binding protein DksA compare
EX31_RS14445 -2.0 -7.5 glycosyltransferase family 2 protein compare
EX31_RS23320 -2.0 -6.3 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS18525 -1.8 -4.3 DNA translocase FtsK compare
EX31_RS23485 -1.7 -3.2 colicin uptake protein TolR compare
EX31_RS20495 -1.7 -6.9 outer membrane protein assembly factor BamB compare
EX31_RS05825 -1.6 -1.9 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS13045 -1.6 -10.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS04105 -1.6 -2.8 helix-turn-helix domain-containing protein compare
EX31_RS22750 -1.6 -3.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS23495 -1.6 -5.8 Tol-Pal system protein TolB compare
EX31_RS15870 -1.6 -2.7 glutamate--ammonia ligase compare
EX31_RS21895 -1.5 -11.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS02515 -1.5 -1.7 PAS domain-containing protein compare
EX31_RS07475 -1.5 -1.9 hypothetical protein compare
EX31_RS20180 -1.5 -2.1 phosphocarrier protein Hpr compare
EX31_RS23500 -1.4 -3.4 peptidoglycan-associated lipoprotein Pal compare
EX31_RS19655 -1.4 -4.0 beta-ketoacyl-ACP synthase I compare
EX31_RS10090 -1.4 -2.7 NAD-dependent epimerase compare
EX31_RS07830 -1.3 -6.4 murein hydrolase activator NlpD compare
EX31_RS16860 -1.3 -10.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS22695 -1.3 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS18095 -1.3 -5.1 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS22625 -1.3 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS11675 -1.3 -2.6 Holliday junction branch migration protein RuvA compare
EX31_RS07415 -1.3 -2.1 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS23480 -1.2 -3.0 Tol-Pal system protein TolQ compare
EX31_RS25290 -1.2 -2.7 hypothetical protein compare
EX31_RS14770 -1.2 -3.6 hypothetical protein compare
EX31_RS02520 -1.2 -1.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS12400 -1.2 -1.7 RNA polymerase factor sigma-54 compare
EX31_RS20735 -1.1 -3.1 exodeoxyribonuclease V subunit beta compare
EX31_RS23895 -1.1 -4.5 TetR/AcrR family transcriptional regulator compare
EX31_RS05040 -1.1 -3.6 helix-turn-helix domain-containing protein compare
EX31_RS07955 -1.1 -9.0 GTP diphosphokinase compare
EX31_RS07340 -1.1 -0.9 stress-induced protein YchH compare
EX31_RS22250 -1.1 -2.7 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS18040 -1.1 -8.1 porin OmpA compare
EX31_RS03790 -1.1 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS15880 -1.0 -5.4 nitrogen regulation protein NR(I) compare
EX31_RS18540 -1.0 -0.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS12665 -1.0 -4.4 transcriptional regulator ExuR compare
EX31_RS03645 -1.0 -2.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS21470 -1.0 -6.3 phosphoglycerate dehydrogenase compare
EX31_RS16655 -1.0 -1.4 hypothetical protein compare
EX31_RS17475 -1.0 -3.5 SDR family oxidoreductase compare
EX31_RS14435 -1.0 -4.6 glycosyltransferase family 4 protein compare
EX31_RS07280 -1.0 -3.8 cytochrome c compare
EX31_RS14500 -1.0 -6.0 orotate phosphoribosyltransferase compare
EX31_RS04325 -1.0 -1.0 hypothetical protein compare
EX31_RS19570 -1.0 -6.7 amidophosphoribosyltransferase compare
EX31_RS20265 -1.0 -2.3 YaiI/YqxD family protein compare
EX31_RS01970 -0.9 -0.8 hypothetical protein compare
EX31_RS16855 -0.9 -6.4 phosphoribosylamine--glycine ligase compare
EX31_RS10340 -0.9 -1.7 GNAT family N-acetyltransferase compare
EX31_RS24670 -0.9 -3.0 peptidoglycan editing factor PgeF compare
EX31_RS14410 -0.9 -8.1 glycosyltransferase family 9 protein compare
EX31_RS18270 -0.9 -6.7 formate C-acetyltransferase compare
EX31_RS04035 -0.9 -6.6 phosphoserine phosphatase compare
EX31_RS11500 -0.9 -1.9 glycosyltransferase family 2 protein compare
EX31_RS10075 -0.9 -6.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
EX31_RS20890 -0.9 -1.6 hypothetical protein compare
EX31_RS14325 -0.9 -6.9 envelope stress sensor histidine kinase CpxA compare
EX31_RS24385 -0.9 -2.6 dihydroorotase compare
EX31_RS07200 -0.9 -4.5 FNR family transcription factor compare
EX31_RS02920 -0.9 -1.7 glycosyltransferase compare
EX31_RS02530 -0.9 -1.2 ABC transporter ATP-binding protein compare
EX31_RS12785 -0.8 -5.8 aspartate carbamoyltransferase compare
EX31_RS14415 -0.8 -4.6 sugar glycosyltransferase compare
EX31_RS22145 -0.8 -1.8 phosphatidylglycerophosphatase A compare
EX31_RS08515 -0.8 -7.6 lipoprotein NlpI compare
EX31_RS14730 -0.8 -0.9 DUF2756 domain-containing protein compare
EX31_RS11540 -0.8 -2.6 dCTP deaminase compare
EX31_RS12875 -0.8 -1.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS24880 -0.8 -7.1 carboxy terminal-processing peptidase compare
EX31_RS16675 -0.8 -2.1 histidine utilization repressor compare
EX31_RS22320 -0.8 -5.5 ammonium transporter AmtB compare
EX31_RS00490 -0.8 -2.1 paraquat-inducible protein A compare
EX31_RS03835 -0.8 -4.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS12385 -0.8 -6.1 RNase adapter RapZ compare
EX31_RS03830 -0.8 -6.2 carbamoyl-phosphate synthase large subunit compare
EX31_RS14005 -0.8 -2.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
EX31_RS01510 -0.8 -1.7 DinI-like family protein compare
EX31_RS15555 -0.8 -1.6 amino acid ABC transporter ATP-binding protein compare
EX31_RS14220 -0.8 -1.4 met regulon transcriptional regulator MetJ compare
EX31_RS07470 -0.8 -1.5 hypothetical protein compare
EX31_RS25225 -0.8 -1.8 hypothetical protein compare
EX31_RS20405 -0.7 -2.6 class I SAM-dependent methyltransferase compare
EX31_RS01805 -0.7 -1.1 hypothetical protein compare
EX31_RS11490 -0.7 -2.1 glycosyltransferase compare
EX31_RS20930 -0.7 -1.1 hypothetical protein compare
EX31_RS18470 -0.7 -3.4 pyruvate formate lyase 1-activating protein compare
EX31_RS08520 -0.7 -5.1 polyribonucleotide nucleotidyltransferase compare
EX31_RS01955 -0.7 -2.1 DUF2931 family protein compare
EX31_RS06225 -0.7 -1.4 hypothetical protein compare
EX31_RS22245 -0.7 -1.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS26000 -0.7 -1.5 GntR family transcriptional regulator compare
EX31_RS13815 -0.7 -0.8 ribonuclease T compare
EX31_RS23875 -0.7 -1.9 DUF1471 domain-containing protein compare
EX31_RS23785 -0.7 -1.9 DUF262 domain-containing protein compare
EX31_RS15165 -0.7 -3.5 tyrosine recombinase XerC compare
EX31_RS04390 -0.7 -1.4 DNA polymerase III subunit chi compare
EX31_RS14610 -0.6 -1.1 twin-arginine translocase subunit TatE compare
EX31_RS11485 -0.6 -3.5 ABC transporter ATP-binding protein compare
EX31_RS25020 -0.6 -2.6 hypothetical protein compare
EX31_RS22620 -0.6 -2.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS10580 -0.6 -2.4 septum site-determining protein MinC compare
EX31_RS18325 -0.6 -1.8 baseplate assembly protein compare
EX31_RS16555 -0.6 -1.9 PTS sugar transporter subunit IIB compare
EX31_RS00130 -0.6 -1.6 GGDEF domain-containing protein compare
EX31_RS09565 -0.6 -1.0 flagellar hook-length control protein FliK compare
EX31_RS24265 -0.6 -2.7 secY/secA suppressor protein compare
EX31_RS23245 -0.6 -5.5 asparagine synthase B compare
EX31_RS11045 -0.6 -1.7 NADP-dependent oxidoreductase compare
EX31_RS11815 -0.6 -4.0 glucose-6-phosphate isomerase compare
EX31_RS12520 -0.6 -4.4 aerobic respiration two-component sensor histidine kinase ArcB compare
EX31_RS20450 -0.6 -2.8 IMP dehydrogenase compare
EX31_RS14310 -0.6 -2.2 6-phosphofructokinase compare
EX31_RS08730 -0.6 -2.2 iron-sulfur cluster repair protein YtfE compare
EX31_RS00170 -0.6 -1.3 DUF1471 domain-containing protein compare
EX31_RS22800 -0.6 -1.1 ArsC family reductase compare
EX31_RS12645 -0.6 -2.9 DUF883 domain-containing protein compare
EX31_RS12240 -0.6 -1.4 rod shape-determining protein MreC compare
EX31_RS14520 -0.5 -3.1 DUF2971 domain-containing protein compare
EX31_RS03310 -0.5 -1.7 hypothetical protein compare
EX31_RS24255 -0.5 -4.5 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS23130 -0.5 -1.4 ribosome silencing factor compare
EX31_RS02790 -0.5 -2.4 low molecular weight phosphotyrosine protein phosphatase compare
EX31_RS10025 -0.5 -1.6 hypothetical protein compare
EX31_RS11660 -0.5 -2.6 MFS transporter compare
EX31_RS03315 -0.5 -1.6 type VI secretion system tube protein Hcp compare
EX31_RS15055 -0.5 -4.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
EX31_RS24285 -0.5 -1.8 DUF1493 family protein compare
EX31_RS11510 -0.5 -2.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
EX31_RS07825 -0.5 -4.5 RNA polymerase sigma factor RpoS compare
EX31_RS25245 -0.5 -2.3 late control protein B compare
EX31_RS15075 -0.5 -3.9 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
EX31_RS09490 -0.5 -0.8 hypothetical protein compare
EX31_RS09115 -0.5 -1.8 ABC transporter ATP-binding protein compare
EX31_RS25695 -0.5 -2.5 DUF1883 domain-containing protein compare
EX31_RS20935 -0.5 -0.8 hypothetical protein compare
EX31_RS18935 -0.5 -2.3 sugar phosphotransferase compare
EX31_RS17285 -0.5 -1.7 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS25295 -0.5 -1.4 GhoT/OrtT family toxin compare
EX31_RS02885 -0.5 -2.3 glycosyltransferase family 2 protein compare
EX31_RS06585 -0.5 -0.9 DUF2501 domain-containing protein compare
EX31_RS11115 -0.5 -1.3 creatininase family protein compare
EX31_RS01615 -0.5 -1.3 DNA breaking-rejoining protein compare
EX31_RS24545 -0.5 -2.7 peptidase T compare
EX31_RS12550 -0.5 -3.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
EX31_RS23315 -0.5 -2.1 replication initiation negative regulator SeqA compare
EX31_RS24655 -0.5 -1.9 hypothetical protein compare
EX31_RS02380 -0.5 -1.4 OsmC family protein compare
EX31_RS10970 -0.5 -2.4 DUF979 domain-containing protein compare
EX31_RS16680 -0.5 -1.6 enoyl-CoA hydratase compare
EX31_RS11480 -0.5 -2.3 ABC transporter permease compare
EX31_RS08820 -0.5 -2.7 RNA chaperone Hfq compare
EX31_RS24375 -0.5 -1.2 biofilm formation regulator BssS compare
EX31_RS03775 -0.5 -1.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS21280 -0.5 -0.8 hydroxymyristoyl-ACP dehydratase compare
EX31_RS18000 -0.5 -2.5 CoA-binding protein compare
EX31_RS13740 -0.5 -0.9 glutathione transferase GstA compare
EX31_RS02740 -0.5 -1.1 oxidative damage protection protein compare
EX31_RS01885 -0.5 -1.3 type IV secretion protein Rhs compare
EX31_RS00380 -0.5 -1.4 ABC transporter ATP-binding protein compare
EX31_RS10975 -0.5 -1.7 DUF2891 domain-containing protein compare
EX31_RS19480 -0.5 -2.6 acetate kinase compare
EX31_RS09530 -0.5 -2.0 hypothetical protein compare
EX31_RS04285 -0.5 -2.3 hypothetical protein compare
EX31_RS21985 -0.5 -2.1 pyrimidine/purine nucleoside phosphorylase compare
EX31_RS19575 -0.5 -3.4 colicin V production protein compare
EX31_RS22680 -0.4 -2.8 polyphosphate kinase 1 compare
EX31_RS10535 -0.4 -0.9 GtrA family protein compare
EX31_RS24380 -0.4 -1.5 DNA damage-inducible protein I compare
EX31_RS18450 -0.4 -1.2 hypothetical protein compare
EX31_RS09945 -0.4 -2.3 threonylcarbamoyl-AMP synthase compare
EX31_RS10540 -0.4 -2.8 glycosyltransferase family 2 protein compare
EX31_RS15875 -0.4 -3.6 nitrogen regulation protein NR(II) compare
EX31_RS18480 -0.4 -2.0 ferredoxin-type protein NapF compare
EX31_RS25135 -0.4 -1.2 hypothetical protein compare
EX31_RS09760 -0.4 -1.1 D-xylose ABC transporter substrate-binding protein compare
EX31_RS01920 -0.4 -1.2 hypothetical protein compare
EX31_RS24855 -0.4 -1.8 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS00470 -0.4 -1.7 PadR family transcriptional regulator compare
EX31_RS01515 -0.4 -2.1 DinI-like family protein compare
EX31_RS20880 -0.4 -1.4 hypothetical protein compare
EX31_RS23835 -0.4 -2.4 phosphonate ABC transporter substrate-binding protein compare
EX31_RS02540 -0.4 -1.3 helix-turn-helix transcriptional regulator compare
EX31_RS09585 -0.4 -1.1 flagellar biosynthetic protein FliO compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm; low oxygen experiments