Experiment set4S158 for Rahnella sp. WP5

200 most important genes:

gene	name	fitness	t score	description
EX31_RS08140		-3.0	-4.6	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
EX31_RS11525		-2.7	-5.2	UTP--glucose-1-phosphate uridylyltransferase GalU
EX31_RS23320		-2.4	-7.0	alpha-D-glucose phosphate-specific phosphoglucomutase
EX31_RS03250		-2.3	-12.9	RNA polymerase-binding protein DksA
EX31_RS10090		-2.3	-3.3	NAD-dependent epimerase
EX31_RS23500		-2.3	-5.5	peptidoglycan-associated lipoprotein Pal
EX31_RS18255		-2.2	-5.3	3-phosphoserine/phosphohydroxythreonine transaminase
EX31_RS15095		-2.2	-4.7	O-antigen assembly polymerase
EX31_RS01595		-2.2	-1.8	phage minor tail protein G
EX31_RS14400		-2.1	-6.0	ADP-heptose--LPS heptosyltransferase RfaF
EX31_RS25910		-2.0	-1.9	hypothetical protein
EX31_RS23480		-1.9	-5.6	Tol-Pal system protein TolQ
EX31_RS11840		-1.9	-10.5	diacylglycerol kinase
EX31_RS13045		-1.9	-11.4	bifunctional uridylyltransferase/uridylyl-removing protein GlnD
EX31_RS23490		-1.9	-3.3	cell envelope integrity protein TolA
EX31_RS07785		-1.8	-2.3	carbon storage regulator CsrA
EX31_RS02530		-1.7	-2.0	ABC transporter ATP-binding protein
EX31_RS23495		-1.7	-6.1	Tol-Pal system protein TolB
EX31_RS14445		-1.7	-7.8	glycosyltransferase family 2 protein
EX31_RS02515		-1.6	-1.1	PAS domain-containing protein
EX31_RS02520		-1.5	-1.8	sigma-54-dependent Fis family transcriptional regulator
EX31_RS14405		-1.5	-1.8	lipopolysaccharide heptosyltransferase RfaC
EX31_RS15085		-1.4	-5.9	lipid III flippase WzxE
EX31_RS22695		-1.4	-5.8	phosphoribosylformylglycinamidine cyclo-ligase
EX31_RS12875		-1.4	-2.7	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
EX31_RS03790		-1.4	-2.2	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
EX31_RS07830		-1.4	-6.1	murein hydrolase activator NlpD
EX31_RS01920		-1.4	-2.6	hypothetical protein
EX31_RS22250		-1.3	-2.9	ATP-dependent protease ATP-binding subunit ClpX
EX31_RS23895		-1.3	-4.5	TetR/AcrR family transcriptional regulator
EX31_RS21020		-1.3	-1.7	D-sedoheptulose 7-phosphate isomerase
EX31_RS19655		-1.3	-4.9	beta-ketoacyl-ACP synthase I
EX31_RS23485		-1.3	-2.5	colicin uptake protein TolR
EX31_RS21895		-1.2	-9.4	phosphoribosylformylglycinamidine synthase
EX31_RS14435		-1.2	-5.2	glycosyltransferase family 4 protein
EX31_RS07955		-1.2	-9.8	GTP diphosphokinase
EX31_RS10590		-1.2	-2.0	cell division topological specificity factor MinE
EX31_RS16860		-1.2	-9.3	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
EX31_RS06680		-1.1	-1.6	cellulose biosynthesis protein BcsF
EX31_RS18040		-1.1	-8.6	porin OmpA
EX31_RS18525		-1.1	-3.2	DNA translocase FtsK
EX31_RS14340		-1.1	-1.3	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
EX31_RS20495		-1.1	-5.3	outer membrane protein assembly factor BamB
EX31_RS10075		-1.1	-7.2	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
EX31_RS14410		-1.0	-9.0	glycosyltransferase family 9 protein
EX31_RS25290		-1.0	-2.3	hypothetical protein
EX31_RS09565		-1.0	-1.6	flagellar hook-length control protein FliK
EX31_RS22750		-1.0	-2.8	phosphoribosylaminoimidazolesuccinocarboxamide synthase
EX31_RS25365		-1.0	-0.9	50S ribosomal protein L31
EX31_RS20185		-1.0	-3.4	phosphoenolpyruvate-protein phosphotransferase PtsI
EX31_RS19570		-1.0	-6.5	amidophosphoribosyltransferase
EX31_RS18470		-1.0	-4.5	pyruvate formate lyase 1-activating protein
EX31_RS06245		-0.9	-3.3	hypothetical protein
EX31_RS15880		-0.9	-5.1	nitrogen regulation protein NR(I)
EX31_RS14415		-0.9	-5.3	sugar glycosyltransferase
EX31_RS22625		-0.9	-2.4	5-(carboxyamino)imidazole ribonucleotide mutase
EX31_RS16655		-0.9	-1.4	hypothetical protein
EX31_RS14310		-0.9	-2.5	6-phosphofructokinase
EX31_RS11045		-0.9	-1.9	NADP-dependent oxidoreductase
EX31_RS13815		-0.9	-1.0	ribonuclease T
EX31_RS20180		-0.9	-1.5	phosphocarrier protein Hpr
EX31_RS10260		-0.9	-2.1	hypothetical protein
EX31_RS10100		-0.8	-1.4	two-component system response regulator RssB
EX31_RS19485		-0.8	-4.2	phosphate acetyltransferase
EX31_RS23440		-0.8	-1.8	2-oxoglutarate dehydrogenase E1 component
EX31_RS16855		-0.8	-5.8	phosphoribosylamine--glycine ligase
EX31_RS10535		-0.8	-1.2	GtrA family protein
EX31_RS04710		-0.8	-2.6	adenine-specific DNA-methyltransferase
EX31_RS07340		-0.8	-1.4	stress-induced protein YchH
EX31_RS05040		-0.8	-3.1	helix-turn-helix domain-containing protein
EX31_RS12400		-0.8	-1.6	RNA polymerase factor sigma-54
EX31_RS22245		-0.8	-1.7	ATP-dependent Clp endopeptidase proteolytic subunit ClpP
EX31_RS26070		-0.8	-3.0	hypothetical protein
EX31_RS24270		-0.8	-3.3	hypothetical protein
EX31_RS04035		-0.8	-5.5	phosphoserine phosphatase
EX31_RS26000		-0.7	-1.5	GntR family transcriptional regulator
EX31_RS04295		-0.7	-1.8	hypothetical protein
EX31_RS24385		-0.7	-2.1	dihydroorotase
EX31_RS18270		-0.7	-5.6	formate C-acetyltransferase
EX31_RS06795		-0.7	-3.2	ABC transporter ATP-binding protein
EX31_RS18095		-0.7	-3.1	quinone-dependent dihydroorotate dehydrogenase
EX31_RS07200		-0.7	-3.2	FNR family transcription factor
EX31_RS22145		-0.7	-1.3	phosphatidylglycerophosphatase A
EX31_RS03830		-0.7	-5.8	carbamoyl-phosphate synthase large subunit
EX31_RS21470		-0.7	-4.5	phosphoglycerate dehydrogenase
EX31_RS01955		-0.7	-1.5	DUF2931 family protein
EX31_RS04390		-0.7	-1.4	DNA polymerase III subunit chi
EX31_RS08515		-0.7	-6.3	lipoprotein NlpI
EX31_RS24880		-0.7	-5.9	carboxy terminal-processing peptidase
EX31_RS14500		-0.7	-4.2	orotate phosphoribosyltransferase
EX31_RS08745		-0.7	-0.9	50S ribosomal protein L9
EX31_RS25295		-0.7	-1.7	GhoT/OrtT family toxin
EX31_RS20700		-0.7	-2.0	GNAT family N-acetyltransferase
EX31_RS05825		-0.7	-1.0	mannitol-1-phosphate 5-dehydrogenase
EX31_RS15165		-0.7	-2.7	tyrosine recombinase XerC
EX31_RS07115		-0.6	-1.8	cysteine dioxygenase
EX31_RS06940		-0.6	-3.3	HD domain-containing protein
EX31_RS07470		-0.6	-0.8	hypothetical protein
EX31_RS14335		-0.6	-1.6	serine O-acetyltransferase
EX31_RS24620		-0.6	-1.2	YebW family protein
EX31_RS15870		-0.6	-1.5	glutamate--ammonia ligase
EX31_RS19070		-0.6	-3.5	1-phosphofructokinase
EX31_RS09075		-0.6	-2.2	type 1 fimbrial protein
EX31_RS24280		-0.6	-3.1	hypothetical protein
EX31_RS09490		-0.6	-1.1	hypothetical protein
EX31_RS17710		-0.6	-2.3	hypothetical protein
EX31_RS02625		-0.6	-1.4	hypothetical protein
EX31_RS02360		-0.6	-1.5	CsbD family protein
EX31_RS09585		-0.6	-1.5	flagellar biosynthetic protein FliO
EX31_RS03310		-0.6	-1.4	hypothetical protein
EX31_RS12785		-0.6	-3.9	aspartate carbamoyltransferase
EX31_RS16420		-0.6	-2.1	DUF3290 domain-containing protein
EX31_RS16690		-0.6	-1.9	CoA transferase
EX31_RS20405		-0.6	-2.2	class I SAM-dependent methyltransferase
EX31_RS24730		-0.6	-1.7	YoaH family protein
EX31_RS10020		-0.6	-0.9	YciI family protein
EX31_RS20450		-0.6	-2.8	IMP dehydrogenase
EX31_RS23315		-0.6	-2.6	replication initiation negative regulator SeqA
EX31_RS08520		-0.6	-4.3	polyribonucleotide nucleotidyltransferase
EX31_RS02790		-0.6	-2.0	low molecular weight phosphotyrosine protein phosphatase
EX31_RS12645		-0.6	-2.6	DUF883 domain-containing protein
EX31_RS04325		-0.6	-0.6	hypothetical protein
EX31_RS09855		-0.6	-1.5	orotidine-5'-phosphate decarboxylase
EX31_RS06800		-0.6	-1.2	ABC transporter permease
EX31_RS22320		-0.6	-3.9	ammonium transporter AmtB
EX31_RS03835		-0.6	-3.2	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
EX31_RS22620		-0.6	-2.4	5-(carboxyamino)imidazole ribonucleotide synthase
EX31_RS18370		-0.6	-1.1	tail protein X
EX31_RS07445		-0.6	-1.6	amino acid ABC transporter permease
EX31_RS10980		-0.5	-2.6	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
EX31_RS21805		-0.5	-3.5	anti-sigma-E factor RseA
EX31_RS14325		-0.5	-4.2	envelope stress sensor histidine kinase CpxA
EX31_RS05685		-0.5	-2.8	hypothetical protein
EX31_RS02270		-0.5	-1.9	transcriptional regulator ChbR
EX31_RS12520		-0.5	-4.0	aerobic respiration two-component sensor histidine kinase ArcB
EX31_RS01135		-0.5	-1.5	SDR family oxidoreductase
EX31_RS23125		-0.5	-1.4	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
EX31_RS13775		-0.5	-1.2	transcriptional regulator SlyA
EX31_RS00805		-0.5	-2.3	translesion error-prone DNA polymerase V subunit UmuC
EX31_RS14770		-0.5	-1.9	hypothetical protein
EX31_RS09325		-0.5	-1.7	transporter
EX31_RS20925		-0.5	-1.0	hypothetical protein
EX31_RS12550		-0.5	-3.3	16S rRNA (cytidine(1402)-2'-O)-methyltransferase
EX31_RS25300		-0.5	-0.8	YqaE/Pmp3 family membrane protein
EX31_RS11490		-0.5	-2.0	glycosyltransferase
EX31_RS07520		-0.5	-1.1	ornithine cyclodeaminase
EX31_RS19150		-0.5	-2.0	hypothetical protein
EX31_RS11675		-0.5	-0.8	Holliday junction branch migration protein RuvA
EX31_RS11200		-0.5	-1.7	alpha/beta fold hydrolase
EX31_RS17565		-0.5	-2.5	GGDEF domain-containing protein
EX31_RS21535		-0.5	-2.7	autoinducer 2 ABC transporter substrate-binding protein
EX31_RS24325		-0.5	-1.4	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee
EX31_RS02365		-0.5	-0.5	hypothetical protein
EX31_RS09650		-0.5	-1.3	GrxA family glutaredoxin
EX31_RS14550		-0.5	-0.9	Trk system potassium transporter TrkH
EX31_RS25105		-0.5	-1.0	DUF2474 domain-containing protein
EX31_RS25410		-0.5	-0.7	transposase
EX31_RS19350		-0.5	-2.2	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase
EX31_RS11815		-0.5	-3.0	glucose-6-phosphate isomerase
EX31_RS18090		-0.5	-1.7	cell division protein ZapC
EX31_RS15875		-0.5	-3.5	nitrogen regulation protein NR(II)
EX31_RS20240		-0.5	-2.4	DUF2919 domain-containing protein
EX31_RS24770		-0.5	-1.6	copper homeostasis periplasmic binding protein CopC
EX31_RS00190		-0.5	-1.6	H-NS histone family protein
EX31_RS23245		-0.5	-4.0	asparagine synthase B
EX31_RS09065		-0.5	-1.6	molecular chaperone
EX31_RS05255		-0.5	-1.6	hypothetical protein
EX31_RS07530		-0.4	-1.6	ABC transporter ATP-binding protein
EX31_RS19510		-0.4	-2.4	PTS sugar transporter subunit IIA
EX31_RS06595		-0.4	-1.0	electron transport complex subunit E
EX31_RS12385		-0.4	-3.7	RNase adapter RapZ
EX31_RS21280		-0.4	-0.6	hydroxymyristoyl-ACP dehydratase
EX31_RS24840		-0.4	-1.6	hypothetical protein
EX31_RS16425		-0.4	-2.1	DUF421 domain-containing protein
EX31_RS11625		-0.4	-0.8	hypothetical protein
EX31_RS18480		-0.4	-1.8	ferredoxin-type protein NapF
EX31_RS25990		-0.4	-1.2	hypothetical protein
EX31_RS18290		-0.4	-0.7	phage tail assembly protein
EX31_RS09795		-0.4	-2.1	autoinducer 2 ABC transporter permease LsrC
EX31_RS03085		-0.4	-2.4	hypothetical protein
EX31_RS10010		-0.4	-2.1	acyl-CoA thioester hydrolase YciA
EX31_RS09220		-0.4	-0.9	MurR/RpiR family transcriptional regulator
EX31_RS10170		-0.4	-2.0	gallate dioxygenase
EX31_RS13270		-0.4	-1.5	PTS lactose/cellobiose transporter subunit IIA
EX31_RS19575		-0.4	-3.1	colicin V production protein
EX31_RS22680		-0.4	-2.5	polyphosphate kinase 1
EX31_RS20895		-0.4	-1.0	hypothetical protein
EX31_RS03330		-0.4	-1.5	hypoxanthine phosphoribosyltransferase
EX31_RS15975		-0.4	-1.2	peptide deformylase
EX31_RS26075		-0.4	-0.8	hypothetical protein
EX31_RS10580		-0.4	-1.4	septum site-determining protein MinC
EX31_RS18265		-0.4	-2.8	formate transporter FocA
EX31_RS04285		-0.4	-1.7	hypothetical protein
EX31_RS25555		-0.4	-0.9	GpE family phage tail protein
EX31_RS14320		-0.4	-1.0	envelope stress response regulator transcription factor CpxR
EX31_RS11635		-0.4	-1.3	transcriptional antiterminator BglG
EX31_RS00110		-0.4	-1.7	ABC transporter permease
EX31_RS06620		-0.4	-1.1	electron transport complex subunit RsxA
EX31_RS17985		-0.4	-1.2	acylphosphatase
EX31_RS18445		-0.4	-1.1	DUF2732 domain-containing protein

Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm; low oxygen experiments