Experiment set4S157 for Rahnella sp. WP5

200 most important genes:

gene	name	fitness	t score	description
EX31_RS14405		-4.5	-3.1	lipopolysaccharide heptosyltransferase RfaC
EX31_RS11525		-2.9	-5.4	UTP--glucose-1-phosphate uridylyltransferase GalU
EX31_RS23490		-2.7	-3.7	cell envelope integrity protein TolA
EX31_RS05825		-2.7	-1.8	mannitol-1-phosphate 5-dehydrogenase
EX31_RS23500		-2.5	-5.3	peptidoglycan-associated lipoprotein Pal
EX31_RS14310		-2.5	-6.0	6-phosphofructokinase
EX31_RS21020		-2.5	-3.5	D-sedoheptulose 7-phosphate isomerase
EX31_RS23495		-2.2	-7.0	Tol-Pal system protein TolB
EX31_RS23485		-2.2	-2.9	colicin uptake protein TolR
EX31_RS23320		-2.1	-6.0	alpha-D-glucose phosphate-specific phosphoglucomutase
EX31_RS10535		-2.1	-2.7	GtrA family protein
EX31_RS15095		-2.1	-3.8	O-antigen assembly polymerase
EX31_RS11840		-2.1	-13.8	diacylglycerol kinase
EX31_RS23480		-2.0	-5.2	Tol-Pal system protein TolQ
EX31_RS14340		-2.0	-2.0	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
EX31_RS08140		-2.0	-3.6	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
EX31_RS03250		-1.9	-8.1	RNA polymerase-binding protein DksA
EX31_RS16645		-1.9	-2.9	DUF1471 domain-containing protein
EX31_RS22145		-1.7	-2.4	phosphatidylglycerophosphatase A
EX31_RS03645		-1.7	-1.7	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
EX31_RS13045		-1.7	-10.0	bifunctional uridylyltransferase/uridylyl-removing protein GlnD
EX31_RS20495		-1.7	-7.3	outer membrane protein assembly factor BamB
EX31_RS18255		-1.7	-4.6	3-phosphoserine/phosphohydroxythreonine transaminase
EX31_RS02520		-1.6	-1.9	sigma-54-dependent Fis family transcriptional regulator
EX31_RS12400		-1.6	-1.8	RNA polymerase factor sigma-54
EX31_RS15085		-1.5	-5.0	lipid III flippase WzxE
EX31_RS22695		-1.5	-7.9	phosphoribosylformylglycinamidine cyclo-ligase
EX31_RS20735		-1.5	-3.8	exodeoxyribonuclease V subunit beta
EX31_RS21895		-1.5	-11.4	phosphoribosylformylglycinamidine synthase
EX31_RS11500		-1.4	-2.6	glycosyltransferase family 2 protein
EX31_RS14445		-1.4	-6.7	glycosyltransferase family 2 protein
EX31_RS14435		-1.4	-6.6	glycosyltransferase family 4 protein
EX31_RS22245		-1.4	-2.2	ATP-dependent Clp endopeptidase proteolytic subunit ClpP
EX31_RS14400		-1.4	-4.0	ADP-heptose--LPS heptosyltransferase RfaF
EX31_RS09550		-1.3	-2.6	flagellar assembly protein FliH
EX31_RS20180		-1.3	-2.9	phosphocarrier protein Hpr
EX31_RS18470		-1.3	-3.7	pyruvate formate lyase 1-activating protein
EX31_RS23895		-1.3	-4.8	TetR/AcrR family transcriptional regulator
EX31_RS14550		-1.2	-1.9	Trk system potassium transporter TrkH
EX31_RS09080		-1.2	-1.9	LysR family transcriptional regulator
EX31_RS22620		-1.2	-6.1	5-(carboxyamino)imidazole ribonucleotide synthase
EX31_RS22250		-1.2	-2.8	ATP-dependent protease ATP-binding subunit ClpX
EX31_RS16860		-1.2	-9.7	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
EX31_RS02515		-1.2	-1.3	PAS domain-containing protein
EX31_RS15880		-1.1	-6.5	nitrogen regulation protein NR(I)
EX31_RS09490		-1.1	-1.5	hypothetical protein
EX31_RS04105		-1.1	-2.0	helix-turn-helix domain-containing protein
EX31_RS20185		-1.1	-4.1	phosphoenolpyruvate-protein phosphotransferase PtsI
EX31_RS18040		-1.1	-7.9	porin OmpA
EX31_RS00010		-1.1	-2.5	type II toxin-antitoxin system HipA family toxin
EX31_RS12875		-1.1	-2.0	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
EX31_RS07830		-1.1	-5.0	murein hydrolase activator NlpD
EX31_RS19570		-1.1	-7.7	amidophosphoribosyltransferase
EX31_RS07955		-1.1	-8.8	GTP diphosphokinase
EX31_RS18540		-1.1	-0.7	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD
EX31_RS03790		-1.0	-2.0	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
EX31_RS14005		-1.0	-2.3	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase
EX31_RS18095		-1.0	-4.6	quinone-dependent dihydroorotate dehydrogenase
EX31_RS19655		-1.0	-3.9	beta-ketoacyl-ACP synthase I
EX31_RS14410		-1.0	-8.7	glycosyltransferase family 9 protein
EX31_RS14730		-1.0	-1.0	DUF2756 domain-containing protein
EX31_RS04035		-0.9	-7.2	phosphoserine phosphatase
EX31_RS14415		-0.9	-5.0	sugar glycosyltransferase
EX31_RS10075		-0.9	-6.3	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
EX31_RS18445		-0.9	-1.8	DUF2732 domain-containing protein
EX31_RS11480		-0.9	-4.3	ABC transporter permease
EX31_RS06225		-0.9	-1.1	hypothetical protein
EX31_RS02790		-0.9	-3.2	low molecular weight phosphotyrosine protein phosphatase
EX31_RS11490		-0.9	-3.2	glycosyltransferase
EX31_RS24380		-0.9	-1.9	DNA damage-inducible protein I
EX31_RS24300		-0.9	-2.1	DUF2971 domain-containing protein
EX31_RS09855		-0.9	-3.0	orotidine-5'-phosphate decarboxylase
EX31_RS25300		-0.9	-1.3	YqaE/Pmp3 family membrane protein
EX31_RS21470		-0.8	-5.4	phosphoglycerate dehydrogenase
EX31_RS07415		-0.8	-0.7	bifunctional diguanylate cyclase/phosphodiesterase
EX31_RS10180		-0.8	-1.7	type II 3-dehydroquinate dehydratase
EX31_RS11675		-0.8	-1.2	Holliday junction branch migration protein RuvA
EX31_RS05040		-0.8	-2.7	helix-turn-helix domain-containing protein
EX31_RS01970		-0.8	-0.7	hypothetical protein
EX31_RS09310		-0.8	-2.5	nitrate reductase molybdenum cofactor assembly chaperone
EX31_RS25100		-0.8	-2.3	PAAR domain-containing protein
EX31_RS10590		-0.8	-1.5	cell division topological specificity factor MinE
EX31_RS04390		-0.8	-1.6	DNA polymerase III subunit chi
EX31_RS18525		-0.8	-2.1	DNA translocase FtsK
EX31_RS24730		-0.8	-1.8	YoaH family protein
EX31_RS07380		-0.7	-1.6	redox-regulated ATPase YchF
EX31_RS16855		-0.7	-5.5	phosphoribosylamine--glycine ligase
EX31_RS12785		-0.7	-4.8	aspartate carbamoyltransferase
EX31_RS07200		-0.7	-3.7	FNR family transcription factor
EX31_RS22750		-0.7	-1.7	phosphoribosylaminoimidazolesuccinocarboxamide synthase
EX31_RS10090		-0.7	-1.6	NAD-dependent epimerase
EX31_RS19795		-0.7	-1.4	hypothetical protein
EX31_RS24375		-0.7	-1.4	biofilm formation regulator BssS
EX31_RS02530		-0.7	-1.0	ABC transporter ATP-binding protein
EX31_RS06275		-0.7	-2.6	D-hexose-6-phosphate mutarotase
EX31_RS08515		-0.7	-6.4	lipoprotein NlpI
EX31_RS15165		-0.7	-3.4	tyrosine recombinase XerC
EX31_RS25990		-0.7	-2.3	hypothetical protein
EX31_RS12665		-0.7	-3.7	transcriptional regulator ExuR
EX31_RS23785		-0.7	-2.2	DUF262 domain-containing protein
EX31_RS11510		-0.7	-3.2	dTDP-4-dehydrorhamnose 3,5-epimerase
EX31_RS18270		-0.7	-5.0	formate C-acetyltransferase
EX31_RS06690		-0.7	-2.5	hypothetical protein
EX31_RS10340		-0.6	-1.9	GNAT family N-acetyltransferase
EX31_RS24385		-0.6	-2.3	dihydroorotase
EX31_RS19195		-0.6	-3.4	16S rRNA pseudouridine(516) synthase RsuA
EX31_RS03570		-0.6	-1.6	DUF721 domain-containing protein
EX31_RS07015		-0.6	-1.8	xanthine dehydrogenase accessory protein XdhC
EX31_RS24645		-0.6	-1.8	DUF2591 domain-containing protein
EX31_RS22320		-0.6	-4.4	ammonium transporter AmtB
EX31_RS24880		-0.6	-5.4	carboxy terminal-processing peptidase
EX31_RS13745		-0.6	-2.8	pyridoxal kinase PdxY
EX31_RS15875		-0.6	-4.9	nitrogen regulation protein NR(II)
EX31_RS06055		-0.6	-1.9	phosphate ABC transporter ATP-binding protein PstB
EX31_RS04295		-0.6	-2.1	hypothetical protein
EX31_RS09945		-0.6	-2.7	threonylcarbamoyl-AMP synthase
EX31_RS17465		-0.6	-1.4	hypothetical protein
EX31_RS24260		-0.6	-1.6	YceK/YidQ family lipoprotein
EX31_RS01960		-0.6	-1.2	DUF2931 family protein
EX31_RS17835		-0.6	-1.4	PTS transporter subunit EIIB
EX31_RS25295		-0.6	-1.7	GhoT/OrtT family toxin
EX31_RS21805		-0.6	-2.8	anti-sigma-E factor RseA
EX31_RS17245		-0.6	-2.2	hypothetical protein
EX31_RS20865		-0.6	-2.7	bacteriocin immunity protein
EX31_RS07470		-0.6	-1.3	hypothetical protein
EX31_RS01990		-0.6	-1.3	type VI secretion system baseplate subunit TssE
EX31_RS12550		-0.6	-3.7	16S rRNA (cytidine(1402)-2'-O)-methyltransferase
EX31_RS01805		-0.6	-1.0	hypothetical protein
EX31_RS19480		-0.6	-3.5	acetate kinase
EX31_RS01965		-0.6	-2.3	DUF2931 family protein
EX31_RS04645		-0.6	-0.7	DUF2559 family protein
EX31_RS03830		-0.6	-4.7	carbamoyl-phosphate synthase large subunit
EX31_RS11540		-0.6	-1.9	dCTP deaminase
EX31_RS24395		-0.6	-1.7	ribonuclease E
EX31_RS14500		-0.6	-3.4	orotate phosphoribosyltransferase
EX31_RS25225		-0.6	-1.6	hypothetical protein
EX31_RS03835		-0.6	-3.5	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
EX31_RS25290		-0.6	-1.8	hypothetical protein
EX31_RS25245		-0.5	-1.7	late control protein B
EX31_RS25690		-0.5	-1.3	tyrosine-type recombinase/integrase
EX31_RS17265		-0.5	-1.9	hypothetical protein
EX31_RS01885		-0.5	-1.0	type IV secretion protein Rhs
EX31_RS08520		-0.5	-3.7	polyribonucleotide nucleotidyltransferase
EX31_RS11185		-0.5	-2.1	MBL fold metallo-hydrolase
EX31_RS02780		-0.5	-1.7	oligosaccharide flippase family protein
EX31_RS12240		-0.5	-0.9	rod shape-determining protein MreC
EX31_RS24855		-0.5	-2.0	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF
EX31_RS23245		-0.5	-4.6	asparagine synthase B
EX31_RS09065		-0.5	-1.8	molecular chaperone
EX31_RS08825		-0.5	-4.2	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
EX31_RS18010		-0.5	-1.7	methylglyoxal synthase
EX31_RS07520		-0.5	-1.3	ornithine cyclodeaminase
EX31_RS23315		-0.5	-3.2	replication initiation negative regulator SeqA
EX31_RS15870		-0.5	-1.3	glutamate--ammonia ligase
EX31_RS16385		-0.5	-1.5	adenosylmethionine decarboxylase
EX31_RS24670		-0.5	-1.4	peptidoglycan editing factor PgeF
EX31_RS24365		-0.5	-2.7	response regulator transcription factor
EX31_RS15265		-0.5	-1.8	hypothetical protein
EX31_RS09905		-0.5	-1.9	protease SohB
EX31_RS14335		-0.5	-1.6	serine O-acetyltransferase
EX31_RS07590		-0.5	-1.6	bifunctional chorismate mutase/prephenate dehydrogenase
EX31_RS10100		-0.5	-1.1	two-component system response regulator RssB
EX31_RS19600		-0.5	-2.8	tRNA pseudouridine(38-40) synthase TruA
EX31_RS20450		-0.5	-2.5	IMP dehydrogenase
EX31_RS01155		-0.5	-2.8	AEC family transporter
EX31_RS03955		-0.5	-2.1	two-component system response regulator ArcA
EX31_RS16710		-0.5	-1.6	ABC transporter permease subunit
EX31_RS26000		-0.5	-1.0	GntR family transcriptional regulator
EX31_RS14325		-0.5	-3.8	envelope stress sensor histidine kinase CpxA
EX31_RS09520		-0.5	-1.0	hypothetical protein
EX31_RS25415		-0.5	-0.7	helix-turn-helix domain-containing protein
EX31_RS02560		-0.5	-0.6	hypothetical protein
EX31_RS00130		-0.5	-1.9	GGDEF domain-containing protein
EX31_RS19665		-0.5	-1.8	YfcL family protein
EX31_RS17750		-0.5	-2.2	glutathione S-transferase family protein
EX31_RS15560		-0.5	-2.4	hypothetical protein
EX31_RS20265		-0.5	-1.4	YaiI/YqxD family protein
EX31_RS23130		-0.5	-1.4	ribosome silencing factor
EX31_RS20700		-0.5	-1.3	GNAT family N-acetyltransferase
EX31_RS02105		-0.5	-1.7	SDR family oxidoreductase
EX31_RS16420		-0.5	-2.0	DUF3290 domain-containing protein
EX31_RS12385		-0.5	-3.8	RNase adapter RapZ
EX31_RS11105		-0.5	-1.8	cytosine deaminase
EX31_RS11815		-0.4	-3.1	glucose-6-phosphate isomerase
EX31_RS02900		-0.4	-2.4	glycosyltransferase
EX31_RS06060		-0.4	-1.7	phosphate ABC transporter permease PstA
EX31_RS00110		-0.4	-1.8	ABC transporter permease
EX31_RS02050		-0.4	-2.6	LuxR family transcriptional regulator
EX31_RS18945		-0.4	-2.0	CatB-related O-acetyltransferase
EX31_RS23285		-0.4	-2.1	hypothetical protein
EX31_RS22335		-0.4	-2.4	MGMT family protein
EX31_RS18420		-0.4	-2.8	hypothetical protein
EX31_RS12030		-0.4	-1.8	hypothetical protein
EX31_RS24305		-0.4	-1.8	VOC family protein
EX31_RS24325		-0.4	-1.3	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee
EX31_RS23455		-0.4	-1.9	succinate--CoA ligase subunit alpha
EX31_RS02915		-0.4	-2.0	glycosyltransferase family 4 protein
EX31_RS09045		-0.4	-2.2	DUF485 domain-containing protein
EX31_RS09650		-0.4	-0.7	GrxA family glutaredoxin
EX31_RS01200		-0.4	-2.2	hypothetical protein

Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm; low oxygen experiments