Experiment set4S155 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
EX31_RS04390 -3.4 -4.0 DNA polymerase III subunit chi compare
EX31_RS14405 -3.0 -2.9 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS13045 -2.4 -12.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS22430 -2.4 -2.0 hemolysin expression modulator Hha compare
EX31_RS16645 -2.3 -2.4 DUF1471 domain-containing protein compare
EX31_RS25300 -2.1 -1.9 YqaE/Pmp3 family membrane protein compare
EX31_RS15880 -2.1 -6.9 nitrogen regulation protein NR(I) compare
EX31_RS02385 -2.0 -1.9 hypothetical protein compare
EX31_RS11540 -1.9 -3.4 dCTP deaminase compare
EX31_RS02520 -1.9 -1.8 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS15875 -1.7 -9.2 nitrogen regulation protein NR(II) compare
EX31_RS23245 -1.6 -12.2 asparagine synthase B compare
EX31_RS21020 -1.6 -1.8 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS17290 -1.6 -3.4 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS07475 -1.5 -2.0 hypothetical protein compare
EX31_RS14550 -1.5 -2.1 Trk system potassium transporter TrkH compare
EX31_RS06055 -1.4 -3.4 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS24250 -1.4 -5.1 glucan biosynthesis protein G compare
EX31_RS23440 -1.4 -2.6 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS05825 -1.3 -1.6 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS16625 -1.3 -1.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS24880 -1.2 -10.1 carboxy terminal-processing peptidase compare
EX31_RS24255 -1.2 -8.9 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS09650 -1.2 -2.8 GrxA family glutaredoxin compare
EX31_RS11335 -1.2 -1.9 flagellar protein FlhE compare
EX31_RS26075 -1.2 -1.6 hypothetical protein compare
EX31_RS02530 -1.2 -1.6 ABC transporter ATP-binding protein compare
EX31_RS09775 -1.2 -2.1 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS15905 -1.2 -7.2 DNA polymerase I compare
EX31_RS05040 -1.2 -4.2 helix-turn-helix domain-containing protein compare
EX31_RS26040 -1.2 -1.6 hypothetical protein compare
EX31_RS01075 -1.2 -4.1 manganese-binding transcriptional regulator MntR compare
EX31_RS05785 -1.2 -2.8 superoxide dismutase [Mn] compare
EX31_RS14610 -1.2 -3.2 twin-arginine translocase subunit TatE compare
EX31_RS02515 -1.1 -1.7 PAS domain-containing protein compare
EX31_RS16655 -1.1 -2.1 hypothetical protein compare
EX31_RS07785 -1.1 -1.3 carbon storage regulator CsrA compare
EX31_RS10020 -1.0 -1.9 YciI family protein compare
EX31_RS18540 -1.0 -0.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS23415 -1.0 -4.3 citrate synthase compare
EX31_RS20890 -1.0 -1.5 hypothetical protein compare
EX31_RS00450 -1.0 -1.6 methionine-R-sulfoxide reductase compare
EX31_RS01805 -0.9 -1.5 hypothetical protein compare
EX31_RS22080 -0.9 -5.3 peroxiredoxin C compare
EX31_RS00625 -0.9 -0.7 YgdI/YgdR family lipoprotein compare
EX31_RS20655 -0.9 -2.6 hypothetical protein compare
EX31_RS23165 -0.9 -4.2 glutamate/aspartate ABC transporter permease GltK compare
EX31_RS11065 -0.9 -3.8 TetR/AcrR family transcriptional regulator compare
EX31_RS23175 -0.9 -2.9 amino acid ABC transporter substrate-binding protein compare
EX31_RS15870 -0.8 -1.7 glutamate--ammonia ligase compare
EX31_RS05255 -0.8 -1.4 hypothetical protein compare
EX31_RS04105 -0.8 -1.3 helix-turn-helix domain-containing protein compare
EX31_RS12400 -0.8 -1.4 RNA polymerase factor sigma-54 compare
EX31_RS13980 -0.8 -1.6 lipoate--protein ligase A compare
EX31_RS17285 -0.8 -1.8 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS20090 -0.8 -1.9 tRNA-Ala compare
EX31_RS14170 -0.8 -6.2 DNA-binding transcriptional regulator OxyR compare
EX31_RS10430 -0.8 -2.5 5-oxoprolinase subunit PxpB compare
EX31_RS06345 -0.8 -3.1 L-Ala-D/L-Glu epimerase compare
EX31_RS24345 -0.8 -2.2 cytochrome b compare
EX31_RS11525 -0.8 -1.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS10035 -0.8 -1.3 cardiolipin synthase compare
EX31_RS23160 -0.7 -1.4 amino acid ABC transporter ATP-binding protein compare
EX31_RS25645 -0.7 -1.0 K(+)-transporting ATPase subunit F compare
EX31_RS01265 -0.7 -1.6 GNAT family N-acetyltransferase compare
EX31_RS22260 -0.7 -3.2 DNA-binding protein HU-beta compare
EX31_RS19205 -0.7 -1.1 50S ribosomal protein L25 compare
EX31_RS13875 -0.7 -3.2 major outer membrane lipoprotein compare
EX31_RS14730 -0.7 -0.7 DUF2756 domain-containing protein compare
EX31_RS09285 -0.7 -1.7 hypothetical protein compare
EX31_RS06340 -0.7 -1.5 thiol peroxidase compare
EX31_RS04710 -0.7 -1.7 adenine-specific DNA-methyltransferase compare
EX31_RS18255 -0.7 -1.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS17835 -0.7 -2.1 PTS transporter subunit EIIB compare
EX31_RS20185 -0.7 -2.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS18290 -0.7 -1.3 phage tail assembly protein compare
EX31_RS02525 -0.7 -3.3 ABC transporter permease compare
EX31_RS18935 -0.7 -3.2 sugar phosphotransferase compare
EX31_RS24385 -0.7 -1.6 dihydroorotase compare
EX31_RS09205 -0.7 -1.3 siderophore-iron reductase FhuF compare
EX31_RS20190 -0.6 -1.0 PTS glucose transporter subunit IIA compare
EX31_RS04035 -0.6 -4.4 phosphoserine phosphatase compare
EX31_RS07430 -0.6 -1.8 transporter substrate-binding domain-containing protein compare
EX31_RS03010 -0.6 -3.5 helix-turn-helix domain-containing protein compare
EX31_RS23170 -0.6 -2.9 amino acid ABC transporter permease compare
EX31_RS22625 -0.6 -1.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS19850 -0.6 -3.0 LysR family transcriptional regulator compare
EX31_RS20495 -0.6 -2.6 outer membrane protein assembly factor BamB compare
EX31_RS01485 -0.6 -1.4 helix-turn-helix domain-containing protein compare
EX31_RS03900 -0.6 -1.5 molecular chaperone DnaK compare
EX31_RS19310 -0.6 -4.4 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS13815 -0.6 -0.7 ribonuclease T compare
EX31_RS20450 -0.6 -2.5 IMP dehydrogenase compare
EX31_RS08515 -0.6 -4.9 lipoprotein NlpI compare
EX31_RS24555 -0.6 -3.5 two-component system sensor histidine kinase PhoQ compare
EX31_RS21755 -0.6 -4.1 outer membrane protein assembly factor BamE compare
EX31_RS07830 -0.6 -2.3 murein hydrolase activator NlpD compare
EX31_RS07140 -0.6 -2.6 oxalate/formate MFS antiporter compare
EX31_RS19305 -0.6 -4.8 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS03330 -0.6 -1.7 hypoxanthine phosphoribosyltransferase compare
EX31_RS13415 -0.6 -2.3 Lrp/AsnC family transcriptional regulator compare
EX31_RS20425 -0.6 -2.4 DUF3313 domain-containing protein compare
EX31_RS24115 -0.6 -1.5 tRNA-Lys compare
EX31_RS02130 -0.6 -1.9 amino acid-binding protein compare
EX31_RS14335 -0.6 -1.3 serine O-acetyltransferase compare
EX31_RS02790 -0.6 -1.8 low molecular weight phosphotyrosine protein phosphatase compare
EX31_RS09975 -0.6 -3.2 tryptophan synthase subunit beta compare
EX31_RS18115 -0.6 -2.0 aliphatic sulfonate ABC transporter permease SsuC compare
EX31_RS24790 -0.5 -2.3 cation transporter compare
EX31_RS00985 -0.5 -1.6 type VI secretion protein compare
EX31_RS22250 -0.5 -1.5 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS18010 -0.5 -0.9 methylglyoxal synthase compare
EX31_RS07095 -0.5 -1.3 DUF1283 family protein compare
EX31_RS06485 -0.5 -0.8 YdbL family protein compare
EX31_RS21145 -0.5 -1.5 oxalurate catabolism protein HpxZ compare
EX31_RS09220 -0.5 -0.6 MurR/RpiR family transcriptional regulator compare
EX31_RS10260 -0.5 -0.9 hypothetical protein compare
EX31_RS01710 -0.5 -0.8 hypothetical protein compare
EX31_RS16860 -0.5 -4.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS02690 -0.5 -2.1 pyrroline-5-carboxylate reductase compare
EX31_RS12230 -0.5 -4.7 RNase E specificity factor CsrD compare
EX31_RS24825 -0.5 -3.7 WG repeat-containing protein compare
EX31_RS10920 -0.5 -1.6 transcriptional regulator RcsA compare
EX31_RS11840 -0.5 -3.7 diacylglycerol kinase compare
EX31_RS09980 -0.5 -2.5 tryptophan synthase subunit alpha compare
EX31_RS06850 -0.5 -1.9 oxidoreductase compare
EX31_RS19795 -0.5 -1.0 hypothetical protein compare
EX31_RS13445 -0.5 -4.0 argininosuccinate synthase compare
EX31_RS09835 -0.5 -1.9 DeoR/GlpR transcriptional regulator compare
EX31_RS07125 -0.5 -1.6 LLM class flavin-dependent oxidoreductase compare
EX31_RS16605 -0.5 -2.2 iron permease compare
EX31_RS22620 -0.5 -2.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS24450 -0.5 -1.4 aminodeoxychorismate lyase compare
EX31_RS00380 -0.5 -1.8 ABC transporter ATP-binding protein compare
EX31_RS25965 -0.5 -2.1 hypothetical protein compare
EX31_RS06690 -0.5 -1.4 hypothetical protein compare
EX31_RS16985 -0.5 -1.6 ROK family transcriptional regulator compare
EX31_RS16355 -0.5 -2.0 hypothetical protein compare
EX31_RS10515 -0.5 -1.9 disulfide bond formation protein DsbB compare
EX31_RS06940 -0.5 -2.3 HD domain-containing protein compare
EX31_RS06275 -0.5 -1.4 D-hexose-6-phosphate mutarotase compare
EX31_RS06265 -0.5 -2.3 MipA/OmpV family protein compare
EX31_RS04925 -0.5 -1.1 Fe-S biogenesis protein NfuA compare
EX31_RS18625 -0.5 -1.0 heavy metal-binding domain-containing protein compare
EX31_RS23840 -0.5 -2.8 phosphonate ABC transporter, permease protein PhnE compare
EX31_RS02215 -0.5 -1.6 isopentenyl-diphosphate Delta-isomerase compare
EX31_RS08535 -0.5 -0.6 30S ribosome-binding factor RbfA compare
EX31_RS04325 -0.5 -0.5 hypothetical protein compare
EX31_RS17615 -0.5 -1.1 hypothetical protein compare
EX31_RS12510 -0.5 -3.5 FAD-dependent oxidoreductase compare
EX31_RS19220 -0.5 -2.8 DUF3413 domain-containing protein compare
EX31_RS15045 -0.5 -2.7 thioredoxin TrxA compare
EX31_RS02320 -0.5 -1.7 LysR family transcriptional regulator compare
EX31_RS01280 -0.5 -0.9 SgcJ/EcaC family oxidoreductase compare
EX31_RS21895 -0.5 -3.5 phosphoribosylformylglycinamidine synthase compare
EX31_RS06320 -0.5 -2.1 YnjH family protein compare
EX31_RS19570 -0.5 -3.2 amidophosphoribosyltransferase compare
EX31_RS14310 -0.5 -1.0 6-phosphofructokinase compare
EX31_RS22695 -0.5 -2.2 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS19485 -0.4 -1.9 phosphate acetyltransferase compare
EX31_RS03220 -0.4 -0.7 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS09235 -0.4 -1.4 M55 family metallopeptidase compare
EX31_RS19370 -0.4 -1.6 DUF1097 domain-containing protein compare
EX31_RS09725 -0.4 -2.1 PQQ-dependent sugar dehydrogenase compare
EX31_RS09565 -0.4 -0.9 flagellar hook-length control protein FliK compare
EX31_RS25720 -0.4 -1.2 hypothetical protein compare
EX31_RS01620 -0.4 -1.5 DUF2190 family protein compare
EX31_RS01675 -0.4 -2.0 hypothetical protein compare
EX31_RS11675 -0.4 -0.9 Holliday junction branch migration protein RuvA compare
EX31_RS14375 -0.4 -3.8 glycosyltransferase compare
EX31_RS23575 -0.4 -1.2 galactose-1-phosphate uridylyltransferase compare
EX31_RS17640 -0.4 -1.2 TetR/AcrR family transcriptional regulator compare
EX31_RS19035 -0.4 -2.5 ABC transporter ATP-binding protein compare
EX31_RS02345 -0.4 -1.5 hypothetical protein compare
EX31_RS12820 -0.4 -3.7 DUF3459 domain-containing protein compare
EX31_RS05925 -0.4 -2.8 glyoxylate/hydroxypyruvate reductase GhrB compare
EX31_RS15155 -0.4 -1.0 diaminopimelate epimerase compare
EX31_RS01645 -0.4 -1.7 DUF1441 family protein compare
EX31_RS14500 -0.4 -2.0 orotate phosphoribosyltransferase compare
EX31_RS10025 -0.4 -1.2 hypothetical protein compare
EX31_RS07035 -0.4 -1.6 guanine deaminase compare
EX31_RS05695 -0.4 -2.1 hypothetical protein compare
EX31_RS01120 -0.4 -1.6 MFS transporter compare
EX31_RS06620 -0.4 -1.4 electron transport complex subunit RsxA compare
EX31_RS08270 -0.4 -1.5 DUF2000 domain-containing protein compare
EX31_RS03955 -0.4 -1.9 two-component system response regulator ArcA compare
EX31_RS10720 -0.4 -1.6 NAD(P)H:quinone oxidoreductase compare
EX31_RS10245 -0.4 -1.6 D-alanyl-D-alanine dipeptidase compare
EX31_RS25245 -0.4 -1.1 late control protein B compare
EX31_RS00950 -0.4 -2.1 type VI secretion system contractile sheath large subunit compare
EX31_RS16855 -0.4 -2.7 phosphoribosylamine--glycine ligase compare
EX31_RS24375 -0.4 -0.8 biofilm formation regulator BssS compare
EX31_RS01920 -0.4 -0.9 hypothetical protein compare
EX31_RS20935 -0.4 -1.1 hypothetical protein compare
EX31_RS06715 -0.4 -1.9 N-formylglutamate deformylase compare
EX31_RS09170 -0.4 -0.9 ABC transporter ATP-binding protein compare
EX31_RS14180 -0.4 -3.1 argininosuccinate lyase compare
EX31_RS09295 -0.4 -2.0 D-amino-acid transaminase compare
EX31_RS06355 -0.4 -2.0 MFS transporter compare
EX31_RS11700 -0.4 -1.0 hydrolase compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms