Experiment set4S154 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
EX31_RS23440 -2.8 -2.7 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS26000 -2.7 -3.6 GntR family transcriptional regulator compare
EX31_RS05825 -2.4 -1.6 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS04390 -2.2 -2.7 DNA polymerase III subunit chi compare
EX31_RS08745 -2.0 -2.0 50S ribosomal protein L9 compare
EX31_RS13045 -1.9 -10.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS17290 -1.9 -4.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS02520 -1.8 -1.8 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS11525 -1.7 -3.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS10490 -1.5 -2.9 putative selenium delivery protein YdfZ compare
EX31_RS12875 -1.5 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS02515 -1.5 -1.4 PAS domain-containing protein compare
EX31_RS02740 -1.5 -2.3 oxidative damage protection protein compare
EX31_RS15875 -1.5 -9.5 nitrogen regulation protein NR(II) compare
EX31_RS18255 -1.5 -3.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS15870 -1.4 -2.4 glutamate--ammonia ligase compare
EX31_RS07380 -1.4 -1.9 redox-regulated ATPase YchF compare
EX31_RS11540 -1.4 -4.2 dCTP deaminase compare
EX31_RS06690 -1.4 -3.9 hypothetical protein compare
EX31_RS15905 -1.4 -8.8 DNA polymerase I compare
EX31_RS09580 -1.4 -1.1 flagellar motor switch protein FliN compare
EX31_RS23245 -1.3 -10.6 asparagine synthase B compare
EX31_RS15880 -1.2 -4.2 nitrogen regulation protein NR(I) compare
EX31_RS24255 -1.2 -8.4 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS10825 -1.2 -1.8 hypothetical protein compare
EX31_RS21280 -1.1 -1.0 hydroxymyristoyl-ACP dehydratase compare
EX31_RS12400 -1.1 -1.8 RNA polymerase factor sigma-54 compare
EX31_RS09650 -1.1 -2.0 GrxA family glutaredoxin compare
EX31_RS07785 -1.1 -1.3 carbon storage regulator CsrA compare
EX31_RS07475 -1.1 -1.8 hypothetical protein compare
EX31_RS17275 -1.1 -2.0 DUF72 domain-containing protein compare
EX31_RS24880 -1.0 -8.6 carboxy terminal-processing peptidase compare
EX31_RS04325 -1.0 -1.0 hypothetical protein compare
EX31_RS18540 -1.0 -0.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS20190 -1.0 -1.5 PTS glucose transporter subunit IIA compare
EX31_RS25105 -1.0 -1.3 DUF2474 domain-containing protein compare
EX31_RS26040 -1.0 -1.0 hypothetical protein compare
EX31_RS01510 -1.0 -2.8 DinI-like family protein compare
EX31_RS24385 -0.9 -2.4 dihydroorotase compare
EX31_RS03010 -0.9 -4.8 helix-turn-helix domain-containing protein compare
EX31_RS10515 -0.9 -3.0 disulfide bond formation protein DsbB compare
EX31_RS24250 -0.9 -4.9 glucan biosynthesis protein G compare
EX31_RS04035 -0.8 -6.0 phosphoserine phosphatase compare
EX31_RS03645 -0.8 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS22430 -0.8 -1.0 hemolysin expression modulator Hha compare
EX31_RS23175 -0.8 -3.7 amino acid ABC transporter substrate-binding protein compare
EX31_RS13815 -0.8 -0.8 ribonuclease T compare
EX31_RS19310 -0.8 -5.4 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS11650 -0.8 -2.2 glucose 1-dehydrogenase compare
EX31_RS22080 -0.7 -4.2 peroxiredoxin C compare
EX31_RS06915 -0.7 -1.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS01485 -0.7 -2.3 helix-turn-helix domain-containing protein compare
EX31_RS09585 -0.7 -1.6 flagellar biosynthetic protein FliO compare
EX31_RS05040 -0.7 -2.7 helix-turn-helix domain-containing protein compare
EX31_RS19305 -0.7 -5.9 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS16680 -0.7 -1.4 enoyl-CoA hydratase compare
EX31_RS10325 -0.7 -1.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
EX31_RS10430 -0.7 -2.0 5-oxoprolinase subunit PxpB compare
EX31_RS21755 -0.7 -4.8 outer membrane protein assembly factor BamE compare
EX31_RS20265 -0.7 -1.7 YaiI/YqxD family protein compare
EX31_RS22625 -0.7 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS07160 -0.7 -1.9 HTH-type transcriptional regulator Cbl compare
EX31_RS01645 -0.7 -2.3 DUF1441 family protein compare
EX31_RS06595 -0.7 -1.3 electron transport complex subunit E compare
EX31_RS01075 -0.7 -3.7 manganese-binding transcriptional regulator MntR compare
EX31_RS15530 -0.7 -1.4 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS24300 -0.7 -1.3 DUF2971 domain-containing protein compare
EX31_RS26005 -0.7 -2.0 transposase compare
EX31_RS17285 -0.7 -2.0 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS23725 -0.7 -2.0 DUF2132 domain-containing protein compare
EX31_RS24855 -0.7 -2.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
EX31_RS09780 -0.7 -2.9 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase compare
EX31_RS24790 -0.6 -2.8 cation transporter compare
EX31_RS07470 -0.6 -1.7 hypothetical protein compare
EX31_RS25945 -0.6 -1.5 hypothetical protein compare
EX31_RS11065 -0.6 -2.6 TetR/AcrR family transcriptional regulator compare
EX31_RS21320 -0.6 -1.7 5S ribosomal RNA compare
EX31_RS07130 -0.6 -1.5 ABC transporter substrate-binding protein compare
EX31_RS20840 -0.6 -1.5 hypothetical protein compare
EX31_RS02530 -0.6 -0.9 ABC transporter ATP-binding protein compare
EX31_RS10100 -0.6 -1.5 two-component system response regulator RssB compare
EX31_RS09665 -0.6 -2.6 hypothetical protein compare
EX31_RS03790 -0.6 -1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS11115 -0.6 -1.5 creatininase family protein compare
EX31_RS21895 -0.6 -4.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS16725 -0.6 -2.0 phytanoyl-CoA dioxygenase compare
EX31_RS16855 -0.6 -4.3 phosphoribosylamine--glycine ligase compare
EX31_RS07000 -0.6 -3.3 iron ABC transporter permease compare
EX31_RS07590 -0.6 -1.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS14335 -0.6 -1.6 serine O-acetyltransferase compare
EX31_RS06435 -0.6 -2.2 DUF333 domain-containing protein compare
EX31_RS25210 -0.6 -2.6 sulfite exporter TauE/SafE family protein compare
EX31_RS17955 -0.6 -1.9 SDR family oxidoreductase compare
EX31_RS14170 -0.6 -4.4 DNA-binding transcriptional regulator OxyR compare
EX31_RS24555 -0.6 -3.6 two-component system sensor histidine kinase PhoQ compare
EX31_RS19440 -0.6 -4.2 transcriptional regulator LrhA compare
EX31_RS10180 -0.6 -1.1 type II 3-dehydroquinate dehydratase compare
EX31_RS23165 -0.6 -3.4 glutamate/aspartate ABC transporter permease GltK compare
EX31_RS23960 -0.6 -2.7 DUF3833 domain-containing protein compare
EX31_RS02525 -0.6 -3.0 ABC transporter permease compare
EX31_RS14180 -0.6 -4.6 argininosuccinate lyase compare
EX31_RS23415 -0.6 -3.1 citrate synthase compare
EX31_RS23170 -0.6 -3.4 amino acid ABC transporter permease compare
EX31_RS24730 -0.6 -2.3 YoaH family protein compare
EX31_RS09970 -0.6 -3.5 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS25680 -0.6 -2.9 PhoP/PhoQ regulator MgrB compare
EX31_RS20180 -0.6 -1.4 phosphocarrier protein Hpr compare
EX31_RS01885 -0.6 -1.3 type IV secretion protein Rhs compare
EX31_RS08515 -0.6 -4.8 lipoprotein NlpI compare
EX31_RS16860 -0.6 -4.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS07800 -0.6 -2.5 recombinase RecA compare
EX31_RS19485 -0.6 -2.4 phosphate acetyltransferase compare
EX31_RS10580 -0.6 -2.0 septum site-determining protein MinC compare
EX31_RS23395 -0.5 -2.9 5-oxoprolinase subunit PxpA compare
EX31_RS05730 -0.5 -0.9 isochorismatase family protein compare
EX31_RS08595 -0.5 -1.4 transcription elongation factor GreA compare
EX31_RS02560 -0.5 -0.6 hypothetical protein compare
EX31_RS19990 -0.5 -1.6 curli production assembly/transport protein CsgF compare
EX31_RS21480 -0.5 -2.6 5-formyltetrahydrofolate cyclo-ligase compare
EX31_RS09080 -0.5 -1.0 LysR family transcriptional regulator compare
EX31_RS14185 -0.5 -3.6 acetylglutamate kinase compare
EX31_RS22695 -0.5 -2.7 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS06620 -0.5 -1.3 electron transport complex subunit RsxA compare
EX31_RS04105 -0.5 -1.0 helix-turn-helix domain-containing protein compare
EX31_RS07830 -0.5 -2.8 murein hydrolase activator NlpD compare
EX31_RS24650 -0.5 -2.0 DUF4060 family protein compare
EX31_RS11700 -0.5 -1.8 hydrolase compare
EX31_RS03835 -0.5 -2.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS26065 -0.5 -1.3 IS630 family transposase compare
EX31_RS20735 -0.5 -1.3 exodeoxyribonuclease V subunit beta compare
EX31_RS13445 -0.5 -4.2 argininosuccinate synthase compare
EX31_RS07180 -0.5 -1.7 DNA endonuclease SmrA compare
EX31_RS00110 -0.5 -2.3 ABC transporter permease compare
EX31_RS07135 -0.5 -0.8 hypothetical protein compare
EX31_RS22550 -0.5 -2.8 Kef family K(+) transporter compare
EX31_RS11205 -0.5 -1.3 chemotaxis protein CheV compare
EX31_RS09710 -0.5 -2.0 LysR family transcriptional regulator compare
EX31_RS06565 -0.5 -1.6 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
EX31_RS25530 -0.5 -1.8 hypothetical protein compare
EX31_RS09960 -0.5 -2.4 glutamine amidotransferase compare
EX31_RS03400 -0.5 -2.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS23885 -0.5 -1.1 DUF1471 domain-containing protein compare
EX31_RS16605 -0.5 -1.7 iron permease compare
EX31_RS18885 -0.5 -2.2 molybdopterin-dependent oxidoreductase compare
EX31_RS18010 -0.5 -1.1 methylglyoxal synthase compare
EX31_RS17985 -0.5 -1.4 acylphosphatase compare
EX31_RS19570 -0.5 -3.3 amidophosphoribosyltransferase compare
EX31_RS13980 -0.5 -1.6 lipoate--protein ligase A compare
EX31_RS24840 -0.5 -1.9 hypothetical protein compare
EX31_RS20185 -0.5 -1.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS00640 -0.5 -2.1 FMN-dependent L-lactate dehydrogenase LldD compare
EX31_RS17465 -0.5 -1.3 hypothetical protein compare
EX31_RS20495 -0.5 -2.2 outer membrane protein assembly factor BamB compare
EX31_RS07215 -0.5 -1.6 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
EX31_RS04520 -0.5 -2.0 YheU family protein compare
EX31_RS05255 -0.5 -1.0 hypothetical protein compare
EX31_RS18370 -0.5 -1.0 tail protein X compare
EX31_RS07385 -0.5 -2.0 HNH nuclease family protein compare
EX31_RS09270 -0.5 -2.0 DUF1611 domain-containing protein compare
EX31_RS01605 -0.5 -1.0 tail protein compare
EX31_RS02320 -0.5 -2.0 LysR family transcriptional regulator compare
EX31_RS06515 -0.5 -2.4 two-component system sensor histidine kinase RstB compare
EX31_RS02565 -0.5 -1.4 3-oxoacyl-ACP synthase compare
EX31_RS07090 -0.5 -1.3 YnfA family protein compare
EX31_RS09360 -0.5 -1.5 ABC transporter permease compare
EX31_RS05245 -0.5 -1.6 PTS sugar transporter subunit IIB compare
EX31_RS21620 -0.5 -2.1 PhzF family phenazine biosynthesis protein compare
EX31_RS09250 -0.4 -1.3 ABC transporter permease subunit compare
EX31_RS06330 -0.4 -1.4 exodeoxyribonuclease III compare
EX31_RS04615 -0.4 -2.1 OsmC family protein compare
EX31_RS06450 -0.4 -2.6 ABC transporter substrate-binding protein compare
EX31_RS09660 -0.4 -2.0 aspartate:alanine antiporter compare
EX31_RS13740 -0.4 -0.9 glutathione transferase GstA compare
EX31_RS03900 -0.4 -1.6 molecular chaperone DnaK compare
EX31_RS15165 -0.4 -1.9 tyrosine recombinase XerC compare
EX31_RS02690 -0.4 -1.7 pyrroline-5-carboxylate reductase compare
EX31_RS12230 -0.4 -3.8 RNase E specificity factor CsrD compare
EX31_RS24395 -0.4 -1.2 ribonuclease E compare
EX31_RS09980 -0.4 -2.1 tryptophan synthase subunit alpha compare
EX31_RS11690 -0.4 -0.7 dihydroneopterin triphosphate diphosphatase compare
EX31_RS22435 -0.4 -2.1 Hha toxicity modulator TomB compare
EX31_RS16625 -0.4 -0.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS04285 -0.4 -1.8 hypothetical protein compare
EX31_RS04645 -0.4 -0.5 DUF2559 family protein compare
EX31_RS15540 -0.4 -0.6 SDR family oxidoreductase compare
EX31_RS09920 -0.4 -1.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
EX31_RS12535 -0.4 -2.3 DnaA initiator-associating protein DiaA compare
EX31_RS10765 -0.4 -2.1 TetR/AcrR family transcriptional regulator compare
EX31_RS22250 -0.4 -1.1 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS08140 -0.4 -0.9 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS14345 -0.4 -0.8 protein-export chaperone SecB compare
EX31_RS18920 -0.4 -1.9 ABC transporter permease compare
EX31_RS10855 -0.4 -1.8 hypothetical protein compare
EX31_RS11460 -0.4 -1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS14310 -0.4 -1.2 6-phosphofructokinase compare
EX31_RS13875 -0.4 -2.6 major outer membrane lipoprotein compare
EX31_RS11625 -0.4 -0.5 hypothetical protein compare
EX31_RS20890 -0.4 -0.7 hypothetical protein compare
EX31_RS22800 -0.4 -1.2 ArsC family reductase compare
EX31_RS06460 -0.4 -1.7 carbohydrate ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms