Experiment set4S152 for Rahnella sp. WP5

Compare to:

NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
EX31_RS20190 -3.1 -2.4 PTS glucose transporter subunit IIA compare
EX31_RS08745 -2.5 -2.3 50S ribosomal protein L9 compare
EX31_RS23440 -2.3 -3.1 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS21020 -2.1 -2.6 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS06585 -2.1 -2.8 DUF2501 domain-containing protein compare
EX31_RS15880 -1.9 -7.5 nitrogen regulation protein NR(I) compare
EX31_RS13045 -1.9 -10.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS24300 -1.9 -2.9 DUF2971 domain-containing protein compare
EX31_RS22430 -1.8 -2.1 hemolysin expression modulator Hha compare
EX31_RS15870 -1.7 -2.2 glutamate--ammonia ligase compare
EX31_RS04105 -1.6 -2.0 helix-turn-helix domain-containing protein compare
EX31_RS25105 -1.6 -2.4 DUF2474 domain-containing protein compare
EX31_RS04390 -1.6 -2.3 DNA polymerase III subunit chi compare
EX31_RS11540 -1.6 -3.7 dCTP deaminase compare
EX31_RS11110 -1.5 -2.6 RidA family protein compare
EX31_RS09650 -1.5 -2.3 GrxA family glutaredoxin compare
EX31_RS02520 -1.5 -1.7 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS07470 -1.5 -3.0 hypothetical protein compare
EX31_RS15875 -1.5 -8.9 nitrogen regulation protein NR(II) compare
EX31_RS00985 -1.4 -4.3 type VI secretion protein compare
EX31_RS02515 -1.4 -1.7 PAS domain-containing protein compare
EX31_RS12400 -1.4 -1.4 RNA polymerase factor sigma-54 compare
EX31_RS23245 -1.4 -11.1 asparagine synthase B compare
EX31_RS25415 -1.3 -1.5 helix-turn-helix domain-containing protein compare
EX31_RS09550 -1.3 -2.6 flagellar assembly protein FliH compare
EX31_RS15905 -1.2 -8.0 DNA polymerase I compare
EX31_RS14405 -1.2 -1.3 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS23320 -1.2 -3.1 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS24250 -1.2 -5.3 glucan biosynthesis protein G compare
EX31_RS17290 -1.2 -3.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS06340 -1.1 -2.0 thiol peroxidase compare
EX31_RS02530 -1.1 -1.6 ABC transporter ATP-binding protein compare
EX31_RS25910 -1.1 -0.7 hypothetical protein compare
EX31_RS03220 -1.1 -1.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS24255 -1.0 -7.9 glucans biosynthesis glucosyltransferase MdoH compare
EX31_RS03400 -1.0 -4.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS12875 -1.0 -1.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS06765 -1.0 -3.4 histidinol-phosphate transaminase compare
EX31_RS07785 -1.0 -1.3 carbon storage regulator CsrA compare
EX31_RS22145 -1.0 -1.6 phosphatidylglycerophosphatase A compare
EX31_RS00130 -1.0 -3.1 GGDEF domain-containing protein compare
EX31_RS23485 -1.0 -1.6 colicin uptake protein TolR compare
EX31_RS10035 -1.0 -1.7 cardiolipin synthase compare
EX31_RS14730 -1.0 -0.9 DUF2756 domain-containing protein compare
EX31_RS20265 -0.9 -2.4 YaiI/YqxD family protein compare
EX31_RS20495 -0.9 -4.1 outer membrane protein assembly factor BamB compare
EX31_RS14320 -0.9 -1.7 envelope stress response regulator transcription factor CpxR compare
EX31_RS05785 -0.9 -1.8 superoxide dismutase [Mn] compare
EX31_RS22080 -0.9 -5.9 peroxiredoxin C compare
EX31_RS03775 -0.9 -2.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS13815 -0.9 -1.2 ribonuclease T compare
EX31_RS10700 -0.9 -1.5 hypothetical protein compare
EX31_RS24555 -0.9 -5.2 two-component system sensor histidine kinase PhoQ compare
EX31_RS25260 -0.9 -3.4 transcriptional regulator compare
EX31_RS20735 -0.8 -2.4 exodeoxyribonuclease V subunit beta compare
EX31_RS24880 -0.8 -7.0 carboxy terminal-processing peptidase compare
EX31_RS12240 -0.8 -1.5 rod shape-determining protein MreC compare
EX31_RS11125 -0.8 -2.4 ABC transporter ATP-binding protein compare
EX31_RS09670 -0.8 -1.7 bleomycin resistance protein compare
EX31_RS19310 -0.8 -6.1 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS22270 -0.8 -1.1 competence protein ComEA compare
EX31_RS03570 -0.8 -1.3 DUF721 domain-containing protein compare
EX31_RS18370 -0.8 -1.7 tail protein X compare
EX31_RS15425 -0.8 -3.0 DUF2461 family protein compare
EX31_RS09170 -0.8 -1.5 ABC transporter ATP-binding protein compare
EX31_RS06980 -0.8 -2.7 iron ABC transporter ATP-binding protein FetA compare
EX31_RS01970 -0.8 -1.2 hypothetical protein compare
EX31_RS06550 -0.8 -1.9 two-component system response regulator NarL compare
EX31_RS19305 -0.8 -6.2 ribonucleoside-diphosphate reductase subunit alpha compare
EX31_RS11690 -0.7 -0.9 dihydroneopterin triphosphate diphosphatase compare
EX31_RS18095 -0.7 -2.7 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS25295 -0.7 -1.4 GhoT/OrtT family toxin compare
EX31_RS05040 -0.7 -2.5 helix-turn-helix domain-containing protein compare
EX31_RS05825 -0.7 -1.2 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS22695 -0.7 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS23125 -0.7 -1.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS23415 -0.7 -4.5 citrate synthase compare
EX31_RS14335 -0.7 -1.0 serine O-acetyltransferase compare
EX31_RS24600 -0.7 -1.5 hypothetical protein compare
EX31_RS02525 -0.7 -4.2 ABC transporter permease compare
EX31_RS11525 -0.7 -2.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS23175 -0.7 -2.7 amino acid ABC transporter substrate-binding protein compare
EX31_RS20185 -0.7 -2.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS03900 -0.7 -1.5 molecular chaperone DnaK compare
EX31_RS18255 -0.7 -1.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS07535 -0.7 -1.9 cytochrome b/b6 domain-containing protein compare
EX31_RS26075 -0.7 -1.1 hypothetical protein compare
EX31_RS19205 -0.7 -1.7 50S ribosomal protein L25 compare
EX31_RS01620 -0.7 -1.7 DUF2190 family protein compare
EX31_RS07015 -0.7 -2.0 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS06595 -0.7 -1.3 electron transport complex subunit E compare
EX31_RS03010 -0.6 -3.3 helix-turn-helix domain-containing protein compare
EX31_RS06955 -0.6 -1.8 hypothetical protein compare
EX31_RS21755 -0.6 -4.8 outer membrane protein assembly factor BamE compare
EX31_RS18540 -0.6 -0.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS16620 -0.6 -1.8 glycosyltransferase compare
EX31_RS17835 -0.6 -1.7 PTS transporter subunit EIIB compare
EX31_RS10340 -0.6 -1.4 GNAT family N-acetyltransferase compare
EX31_RS11150 -0.6 -1.4 efflux transporter periplasmic adaptor subunit compare
EX31_RS09685 -0.6 -2.7 GNAT family N-acetyltransferase compare
EX31_RS02690 -0.6 -2.8 pyrroline-5-carboxylate reductase compare
EX31_RS09995 -0.6 -1.3 YkgJ family cysteine cluster protein compare
EX31_RS03085 -0.6 -3.5 hypothetical protein compare
EX31_RS06245 -0.6 -2.1 hypothetical protein compare
EX31_RS02295 -0.6 -1.6 gluconate 2-dehydrogenase subunit 3 family protein compare
EX31_RS10815 -0.6 -1.7 oxidoreductase compare
EX31_RS14170 -0.6 -4.3 DNA-binding transcriptional regulator OxyR compare
EX31_RS23165 -0.6 -3.6 glutamate/aspartate ABC transporter permease GltK compare
EX31_RS16625 -0.6 -0.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS09065 -0.6 -1.4 molecular chaperone compare
EX31_RS16690 -0.6 -2.2 CoA transferase compare
EX31_RS06690 -0.6 -1.6 hypothetical protein compare
EX31_RS23490 -0.6 -1.2 cell envelope integrity protein TolA compare
EX31_RS01280 -0.6 -1.4 SgcJ/EcaC family oxidoreductase compare
EX31_RS09195 -0.6 -2.5 gamma-glutamyltransferase family protein compare
EX31_RS06485 -0.6 -0.9 YdbL family protein compare
EX31_RS07360 -0.6 -1.8 protease modulator HflC compare
EX31_RS22680 -0.6 -2.9 polyphosphate kinase 1 compare
EX31_RS09960 -0.6 -2.5 glutamine amidotransferase compare
EX31_RS05255 -0.6 -1.2 hypothetical protein compare
EX31_RS17485 -0.6 -3.1 ABC transporter substrate-binding protein compare
EX31_RS25230 -0.6 -2.2 LysR family transcriptional regulator compare
EX31_RS13505 -0.6 -2.2 class IV adenylate cyclase compare
EX31_RS08515 -0.5 -4.7 lipoprotein NlpI compare
EX31_RS15540 -0.5 -0.8 SDR family oxidoreductase compare
EX31_RS06515 -0.5 -3.2 two-component system sensor histidine kinase RstB compare
EX31_RS07430 -0.5 -2.1 transporter substrate-binding domain-containing protein compare
EX31_RS14180 -0.5 -4.3 argininosuccinate lyase compare
EX31_RS16355 -0.5 -2.2 hypothetical protein compare
EX31_RS15565 -0.5 -2.7 NmrA/HSCARG family protein compare
EX31_RS13445 -0.5 -4.3 argininosuccinate synthase compare
EX31_RS25210 -0.5 -2.3 sulfite exporter TauE/SafE family protein compare
EX31_RS24385 -0.5 -1.9 dihydroorotase compare
EX31_RS04035 -0.5 -3.6 phosphoserine phosphatase compare
EX31_RS10325 -0.5 -1.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
EX31_RS05885 -0.5 -1.9 N-acetyltransferase compare
EX31_RS19440 -0.5 -3.4 transcriptional regulator LrhA compare
EX31_RS03330 -0.5 -1.3 hypoxanthine phosphoribosyltransferase compare
EX31_RS13870 -0.5 -1.0 pyruvate kinase PykF compare
EX31_RS10260 -0.5 -1.2 hypothetical protein compare
EX31_RS11280 -0.5 -2.2 flagellar basal body P-ring protein FlgI compare
EX31_RS02130 -0.5 -2.0 amino acid-binding protein compare
EX31_RS07590 -0.5 -1.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS25955 -0.5 -2.8 hypothetical protein compare
EX31_RS00585 -0.5 -0.9 multidrug efflux SMR transporter compare
EX31_RS21135 -0.5 -3.5 oxalurate catabolism protein HpxX compare
EX31_RS21620 -0.5 -2.8 PhzF family phenazine biosynthesis protein compare
EX31_RS00720 -0.5 -1.6 hypothetical protein compare
EX31_RS15685 -0.5 -1.8 phage shock protein PspA compare
EX31_RS09665 -0.5 -1.4 hypothetical protein compare
EX31_RS00760 -0.5 -1.5 glutathione S-transferase compare
EX31_RS06795 -0.5 -1.5 ABC transporter ATP-binding protein compare
EX31_RS00110 -0.5 -1.5 ABC transporter permease compare
EX31_RS09980 -0.5 -2.5 tryptophan synthase subunit alpha compare
EX31_RS12230 -0.5 -4.2 RNase E specificity factor CsrD compare
EX31_RS20730 -0.5 -2.9 exodeoxyribonuclease V subunit alpha compare
EX31_RS20450 -0.5 -2.0 IMP dehydrogenase compare
EX31_RS13875 -0.5 -3.1 major outer membrane lipoprotein compare
EX31_RS16385 -0.5 -1.2 adenosylmethionine decarboxylase compare
EX31_RS12930 -0.5 -1.2 Rho-binding antiterminator compare
EX31_RS02110 -0.5 -2.0 L-rhamnose mutarotase compare
EX31_RS18625 -0.5 -1.3 heavy metal-binding domain-containing protein compare
EX31_RS11335 -0.5 -1.1 flagellar protein FlhE compare
EX31_RS21825 -0.5 -2.7 elongation factor 4 compare
EX31_RS01265 -0.5 -1.9 GNAT family N-acetyltransferase compare
EX31_RS19115 -0.5 -2.5 phosphatase PAP2 family protein compare
EX31_RS01075 -0.5 -2.2 manganese-binding transcriptional regulator MntR compare
EX31_RS25225 -0.5 -1.5 hypothetical protein compare
EX31_RS14025 -0.5 -2.3 vitamin B12 ABC transporter ATP-binding protein BtuD compare
EX31_RS19350 -0.5 -1.8 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase compare
EX31_RS09260 -0.5 -2.0 ABC transporter ATP-binding protein compare
EX31_RS07445 -0.5 -1.8 amino acid ABC transporter permease compare
EX31_RS17450 -0.5 -2.4 ATP-independent periplasmic protein-refolding chaperone compare
EX31_RS07035 -0.5 -1.6 guanine deaminase compare
EX31_RS02335 -0.5 -2.4 hypothetical protein compare
EX31_RS15555 -0.5 -1.2 amino acid ABC transporter ATP-binding protein compare
EX31_RS11570 -0.5 -1.8 LysR family transcriptional regulator compare
EX31_RS18880 -0.5 -2.2 thioredoxin reductase compare
EX31_RS01040 -0.5 -2.1 serine hydrolase compare
EX31_RS09115 -0.5 -1.2 ABC transporter ATP-binding protein compare
EX31_RS17465 -0.4 -1.2 hypothetical protein compare
EX31_RS00035 -0.4 -3.0 fumarylacetoacetate hydrolase family protein compare
EX31_RS07800 -0.4 -2.2 recombinase RecA compare
EX31_RS09975 -0.4 -2.6 tryptophan synthase subunit beta compare
EX31_RS22750 -0.4 -1.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS16350 -0.4 -3.5 DsbA family protein compare
EX31_RS18795 -0.4 -1.8 DMT family transporter compare
EX31_RS24115 -0.4 -0.9 tRNA-Lys compare
EX31_RS26085 -0.4 -1.2 alpha/beta hydrolase compare
EX31_RS21300 -0.4 -1.3 acyl carrier protein compare
EX31_RS09715 -0.4 -1.6 M20 family metallopeptidase compare
EX31_RS11105 -0.4 -1.5 cytosine deaminase compare
EX31_RS09705 -0.4 -1.9 HAD-IB family hydrolase compare
EX31_RS23500 -0.4 -1.6 peptidoglycan-associated lipoprotein Pal compare
EX31_RS13070 -0.4 -1.6 YqcC family protein compare
EX31_RS17490 -0.4 -2.4 amino acid ABC transporter permease compare
EX31_RS11845 -0.4 -0.5 repressor LexA compare
EX31_RS10020 -0.4 -1.1 YciI family protein compare
EX31_RS06645 -0.4 -2.2 arabinose ABC transporter substrate-binding protein compare
EX31_RS02155 -0.4 -2.0 HD domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in mixed community experiments

For mixed community Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum across organisms